Clone GH02505 Report

Search the DGRC for GH02505

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:25
Well:5
Vector:pOT2
Associated Gene/TranscriptRh3-RA
Protein status:GH02505.pep: gold
Preliminary Size:1378
Sequenced Size:1397

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10888 2000-02-14 Blastp of sequenced clone
CG10888 2001-01-01 Release 2 assignment
CG10888 2003-01-01 Sim4 clustering to Release 3
Rh3 2008-04-29 Release 5.5 accounting
Rh3 2008-08-15 Release 5.9 accounting
Rh3 2008-12-18 5.12 accounting

Clone Sequence Records

GH02505.complete Sequence

1397 bp (1397 high quality bases) assembled on 2000-02-14

GenBank Submission: AF184224

> GH02505.complete
CAGACCGGAGCATGGAGTCCGGTAACGTGTCGTCGAGTCTGTTTGGCAAC
GTGTCCACCGCGCTGCGGCCGGAGGCGCGGCTCTCCGCCGAAACGCGTCT
GCTGGGCTGGAATGTGCCGCCGGAGGAGCTGCGGCACATTCCCGAGCACT
GGCTAACTTACCCGGAGCCGCCCGAATCGATGAACTACCTGCTGGGCACG
CTCTACATCTTCTTCACCCTGATGTCGATGCTGGGCAATGGACTGGTGAT
TTGGGTCTTCTCCGCAGCCAAATCGCTGCGAACTCCCTCCAATATACTGG
TCATCAATCTGGCCTTCTGCGACTTCATGATGATGGTCAAGACTCCGATA
TTCATCTACAATAGCTTCCACCAGGGATATGCGCTGGGTCATCTGGGATG
CCAGATCTTTGGAATCATTGGCTCCTATACGGGAATCGCTGCCGGTGCCA
CCAATGCGTTTATAGCCTACGATCGATTCAATGTGATCACTCGACCCATG
GAGGGCAAGATGACGCATGGCAAGGCCATTGCCATGATCATATTCATCTA
CATGTACGCCACTCCATGGGTGGTTGCCTGCTACACGGAGACTTGGGGCC
GTTTTGTGCCGGAGGGATATCTGACATCCTGCACCTTTGACTATCTCACC
GATAACTTCGATACGCGACTCTTTGTGGCCTGCATCTTCTTCTTCAGCTT
CGTGTGTCCCACCACGATGATCACGTACTACTACTCCCAGATTGTGGGCC
ATGTCTTTAGCCACGAGAAAGCACTGCGGGATCAGGCCAAGAAGATGAAC
GTGGAATCGCTGCGTTCGAATGTGGACAAAAACAAGGAGACGGCGGAAAT
CCGGATAGCCAAAGCGGCCATCACCATATGCTTCCTGTTCTTTTGCTCGT
GGACGCCGTACGGAGTTATGTCGCTGATTGGCGCCTTTGGGGATAAGACC
CTTTTGACGCCCGGAGCCACAATGATTCCCGCCTGTGCCTGCAAAATGGT
GGCCTGCATCGATCCGTTCGTGTACGCCATAAGTCATCCCAGATACCGCA
TGGAGCTGCAGAAGCGATGTCCCTGGCTGGCGCTCAACGAAAAGGCGCCG
GAATCGTCGGCTGTCGCCTCCACCAGCACCACCCAGGAACCACAGCAGAC
CACCGCCGCCTAATGCAAATTCCCACCCAACAGCCACCCATCCAAAAAAT
GCTGACAATGATGATGAACTGAAACGGCAACGAACTCGTAATACCAAACG
CCAGGGAAAATTGTATAAATATTTCACGGAGTTTCTGCTAGAGTGCAAAG
AGTTGAAAATATTTTCTTGTTATGATTTGTAGTCACTTTTGTGTTTATGA
AAGAAATATAGTAAAATTACAGCAAGCTAAAAAAAAAAAAAAAAAAA

GH02505.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
Rh3-RA 1401 Rh3-RA 14..1392 1..1379 6895 100 Plus
Rh4-RA 1862 Rh4-RA 1137..1625 606..1094 1185 82.8 Plus
sina.b 3862 sina.b 14..496 1094..612 1170 82.8 Minus
Rh4-RA 1862 Rh4-RA 763..901 232..370 170 74.8 Plus
Rh4-RA 1862 Rh4-RA 639..728 108..197 165 78.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 15905010..15906387 1378..1 6890 100 Minus
chr3L 24539361 chr3L 16842260..16842742 1094..612 1170 82.8 Minus
chr3L 24539361 chr3L 16851496..16851878 490..108 295 71.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:28:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20081059..20082437 1379..1 6895 100 Minus
3L 28110227 3L 16852758..16853240 1094..612 1170 82.8 Minus
3L 28110227 3L 16862004..16862386 490..108 310 72.1 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 19821890..19823268 1379..1 6895 100 Minus
3L 28103327 3L 16845858..16846340 1094..612 1170 82.8 Minus
3L 28103327 3L 16855224..16855362 370..232 170 74.8 Minus
3L 28103327 3L 16855397..16855486 197..108 165 78.8 Minus
Blast to na_te.dros performed on 2019-03-15 17:50:45 has no hits.

GH02505.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:51:36 Download gff for GH02505.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 15905010..15906387 1..1378 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:08:06 Download gff for GH02505.complete
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 1..1152 12..1163 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:32:57 Download gff for GH02505.complete
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 1..1152 12..1163 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:48:40 Download gff for GH02505.complete
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 1..1152 12..1163 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:07:24 Download gff for GH02505.complete
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 1..1152 12..1163 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:48:50 Download gff for GH02505.complete
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 1..1152 12..1163 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:34:58 Download gff for GH02505.complete
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 14..1391 1..1378 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:32:57 Download gff for GH02505.complete
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 14..1391 1..1378 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:48:40 Download gff for GH02505.complete
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 14..1391 1..1378 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:07:24 Download gff for GH02505.complete
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 14..1391 1..1378 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:48:50 Download gff for GH02505.complete
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 14..1391 1..1378 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:51:36 Download gff for GH02505.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20081060..20082437 1..1378 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:51:36 Download gff for GH02505.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20081060..20082437 1..1378 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:51:36 Download gff for GH02505.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20081060..20082437 1..1378 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:48:40 Download gff for GH02505.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15906782..15908159 1..1378 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:44:59 Download gff for GH02505.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19821891..19823268 1..1378 100   Minus

GH02505.hyp Sequence

Translation from 2 to 1162

> GH02505.hyp
DRSMESGNVSSSLFGNVSTALRPEARLSAETRLLGWNVPPEELRHIPEHW
LTYPEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILV
INLAFCDFMMMVKTPIFIYNSFHQGYALGHLGCQIFGIIGSYTGIAAGAT
NAFIAYDRFNVITRPMEGKMTHGKAIAMIIFIYMYATPWVVACYTETWGR
FVPEGYLTSCTFDYLTDNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGH
VFSHEKALRDQAKKMNVESLRSNVDKNKETAEIRIAKAAITICFLFFCSW
TPYGVMSLIGAFGDKTLLTPGATMIPACACKMVACIDPFVYAISHPRYRM
ELQKRCPWLALNEKAPESSAVASTSTTQEPQQTTAA*

GH02505.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
Rh3-PA 383 CG10888-PA 1..383 4..386 2039 100 Plus
Rh4-PA 378 CG9668-PA 12..378 21..386 1459 74.2 Plus
Rh5-PB 382 CG5279-PB 25..366 34..379 839 45.4 Plus
Rh5-PA 382 CG5279-PA 25..366 34..379 839 45.4 Plus
Rh2-PA 381 CG16740-PA 1..376 4..379 609 38.4 Plus

GH02505.pep Sequence

Translation from 11 to 1162

> GH02505.pep
MESGNVSSSLFGNVSTALRPEARLSAETRLLGWNVPPEELRHIPEHWLTY
PEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINL
AFCDFMMMVKTPIFIYNSFHQGYALGHLGCQIFGIIGSYTGIAAGATNAF
IAYDRFNVITRPMEGKMTHGKAIAMIIFIYMYATPWVVACYTETWGRFVP
EGYLTSCTFDYLTDNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFS
HEKALRDQAKKMNVESLRSNVDKNKETAEIRIAKAAITICFLFFCSWTPY
GVMSLIGAFGDKTLLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQ
KRCPWLALNEKAPESSAVASTSTTQEPQQTTAA*

GH02505.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17335-PA 385 GF17335-PA 3..385 1..383 2017 96.9 Plus
Dana\GF10499-PA 380 GF10499-PA 12..364 18..367 1410 72.8 Plus
Dana\GF14411-PA 382 GF14411-PA 25..377 31..383 844 43.6 Plus
Dana\GF23219-PA 381 GF23219-PA 1..381 1..382 609 37.1 Plus
Dana\GF17352-PA 373 GF17352-PA 26..373 34..382 582 37.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\Rh3-PA 383 GG15608-PA 1..383 1..383 2023 97.1 Plus
Dere\Rh4-PA 378 GG15846-PA 12..363 18..367 1428 74.1 Plus
Dere\GG23755-PA 382 GG23755-PA 25..375 31..373 841 44.4 Plus
Dere\Rh2-PA 381 GG23078-PA 19..381 19..382 602 38.4 Plus
Dere\ninaE-PA 373 GG15786-PA 26..373 34..382 583 37.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23919-PA 382 GH23919-PA 4..382 5..383 1814 88.7 Plus
Dgri\GH17066-PA 383 GH17066-PA 14..365 15..364 1440 74.1 Plus
Dgri\GH13098-PA 391 GH13098-PA 33..369 31..367 858 46.7 Plus
Dgri\GH14493-PA 383 GH14493-PA 10..382 6..379 610 38.4 Plus
Dgri\GH23312-PA 373 GH23312-PA 4..371 11..379 582 37.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
Rh3-PA 383 CG10888-PA 1..383 1..383 2039 100 Plus
Rh4-PA 378 CG9668-PA 12..378 18..383 1459 74.2 Plus
Rh5-PB 382 CG5279-PB 25..366 31..376 839 45.4 Plus
Rh5-PA 382 CG5279-PA 25..366 31..376 839 45.4 Plus
Rh2-PA 381 CG16740-PA 1..376 1..376 609 38.4 Plus
ninaE-PA 373 CG4550-PA 27..373 35..382 581 37.7 Plus
Rh7-PA 483 CG5638-PA 105..396 47..350 567 37.7 Plus
Rh6-PC 362 CG5192-PC 20..361 31..378 504 33.8 Plus
AstC-R2-PE 549 CG13702-PE 125..432 46..353 172 18.9 Plus
AstC-R2-PB 549 CG13702-PB 125..432 46..353 172 18.9 Plus
AstC-R2-PD 567 CG13702-PD 125..432 46..353 172 18.9 Plus
AstC-R2-PF 593 CG13702-P2-RF 125..432 46..353 172 18.9 Plus
CG30340-PA 396 CG30340-PA 15..142 33..168 167 28.5 Plus
Lkr-PA 542 CG10626-PA 31..332 54..352 166 22.3 Plus
AstC-R1-PA 483 CG7285-PA 83..312 64..302 163 20.6 Plus
RYa-R-PC 467 CG5811-PC 111..427 64..375 162 20.9 Plus
RYa-R-PB 518 CG5811-PB 111..427 64..375 162 20.9 Plus
AstA-R2-PC 357 CG10001-PC 28..355 45..374 160 20 Plus
AstA-R2-PA 357 CG10001-PA 28..355 45..374 160 20 Plus
SIFaR-PC 758 CG10823-PC 206..544 56..382 159 22.1 Plus
SIFaR-PA 758 CG10823-PA 206..544 56..382 159 22.1 Plus
RYa-R-PA 464 CG5811-PA 111..423 64..371 158 20.9 Plus
TkR86C-PA 504 CG6515-PA 77..376 52..351 157 19.6 Plus
TkR86C-PB 555 CG6515-PB 77..376 52..351 157 19.6 Plus
AstA-R2-PB 350 CG10001-PB 28..349 45..374 156 19.5 Plus
AkhR-PD 443 CG11325-PD 43..328 63..347 156 23.6 Plus
AkhR-PB 443 CG11325-PB 43..328 63..347 156 23.6 Plus
AkhR-PA 443 CG11325-PA 43..328 63..347 156 23.6 Plus
AkhR-PC 455 CG11325-PC 43..328 63..347 156 23.6 Plus
AstA-R1-PD 394 CG2872-PD 79..388 66..374 154 21.5 Plus
AstA-R1-PB 394 CG2872-PB 79..388 66..374 154 21.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10051-PA 380 GI10051-PA 9..361 12..364 1756 90.7 Plus
Dmoj\GI11660-PA 384 GI11660-PA 12..372 12..370 1480 74.8 Plus
Dmoj\GI14181-PA 389 GI14181-PA 32..384 31..383 880 46.2 Plus
Dmoj\GI22968-PA 384 GI22968-PA 22..382 19..379 609 38 Plus
Dmoj\GI10328-PA 373 GI10328-PA 4..371 11..379 587 37.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12515-PA 382 GL12515-PA 1..366 1..367 1868 92.6 Plus
Dper\GL20699-PA 380 GL20699-PA 12..364 18..367 1439 74.2 Plus
Dper\GL16118-PA 384 GL16118-PA 27..375 31..383 839 44.9 Plus
Dper\GL23439-PA 381 GL23439-PA 11..379 14..379 604 38.2 Plus
Dper\ninaE-PA 373 GL12414-PA 4..373 11..382 591 36.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Rh3-PA 398 GA10619-PA 17..382 1..367 1867 92.6 Plus
Dpse\Rh4-PA 380 GA28288-PA 12..364 18..367 1445 74.5 Plus
Dpse\GA18781-PA 384 GA18781-PA 27..379 31..383 837 44.7 Plus
Dpse\Rh2-PA 381 GA14120-PA 19..379 19..379 604 38.3 Plus
Dpse\ninaE-PA 373 GA18249-PA 4..373 11..382 591 36.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17694-PA 383 GM17694-PA 1..383 1..383 2052 99.2 Plus
Dsec\GM24362-PA 378 GM24362-PA 12..363 18..367 1427 74.1 Plus
Dsec\GM17893-PA 381 GM17893-PA 1..381 1..382 607 37.4 Plus
Dsec\GM26888-PA 373 GM26888-PA 26..373 34..382 581 37.6 Plus
Dsec\GM24675-PA 483 GM24675-PA 105..396 47..350 558 37.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12438-PA 378 GD12438-PA 12..363 18..367 1427 74.1 Plus
Dsim\GD20079-PA 236 GD20079-PA 1..232 1..232 1218 97.4 Plus
Dsim\GD23807-PA 382 GD23807-PA 25..366 31..376 848 45.1 Plus
Dsim\GD20080-PA 136 GD20080-PA 10..136 257..383 676 99.2 Plus
Dsim\GD19254-PA 381 GD19254-PA 1..381 1..382 602 37.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Rh3-PA 381 GJ23441-PA 9..361 12..364 1773 90.9 Plus
Dvir\GJ23786-PA 380 GJ23786-PA 9..361 12..364 1771 90.7 Plus
Dvir\Rh4-PA 383 GJ11339-PA 16..364 18..364 1470 76.5 Plus
Dvir\GJ17505-PA 391 GJ17505-PA 34..375 31..376 847 46 Plus
Dvir\Rh2-PA 379 GJ14545-PA 17..377 19..379 612 38.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\Rh3-PA 388 GK22792-PA 4..374 1..369 1858 92.2 Plus
Dwil\Rh4-PA 380 GK13877-PA 3..365 9..367 1455 74.1 Plus
Dwil\GK23748-PA 397 GK23748-PA 28..369 22..361 850 45.5 Plus
Dwil\Rh2-PA 375 GK22745-PA 13..375 19..382 614 38.7 Plus
Dwil\ninaE-PA 373 GK22808-PA 26..373 34..382 578 37.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25087-PA 383 GE25087-PA 1..383 1..383 2052 99.2 Plus
Dyak\GE22185-PA 378 GE22185-PA 12..363 18..367 1434 74.7 Plus
Dyak\GE18562-PA 382 GE18562-PA 25..366 31..376 848 45.5 Plus
Dyak\GE25563-PA 381 GE25563-PA 1..381 1..382 600 37.1 Plus
Dyak\GE25107-PA 373 GE25107-PA 26..373 34..382 583 37.6 Plus