Clone GH02536 Report

Search the DGRC for GH02536

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:25
Well:36
Vector:pOT2
Associated Gene/TranscriptCG8230-RA
Protein status:GH02536.pep: gold
Preliminary Size:2800
Sequenced Size:2856

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8230 2000-02-14 Blastp of sequenced clone
CG8230 2001-01-01 Release 2 assignment
CG8230 2003-01-01 Sim4 clustering to Release 3
CG8230 2008-04-29 Release 5.5 accounting
CG8230 2008-08-15 Release 5.9 accounting
CG8230 2008-12-18 5.12 accounting

Clone Sequence Records

GH02536.complete Sequence

2856 bp (2856 high quality bases) assembled on 2000-02-14

GenBank Submission: AF132149

> GH02536.complete
GGGTAAGCACCTCACCCCCCCGCTCAATGATCAAGTGACGTGCCACCAAT
ATAACCATTGGCCGGCCAACAGCACTCTTTCGACTGCGGAATGGGCATCA
ACGTCAGCAGGACGGCCGACCTGGGGTCCAACCAGTGGCTCCAGCGCTTC
GTGGGCCGCCAGCACATCGCCCACGATGACGAGGCCTTCTGGAACGGGCT
GCTCAACTACAACATTGTGCTGCCGGAGAACAGTCAGGACCAGCTCAACC
TGGACAGCCGGCTAGAGGCGCTGTGCCAGTCGTTCATCGGCAATAACCTG
AAGACGGGCAACTTTGGCTCCCTGGTGACCGTGTTCCTGGAGAAGACCAG
CGAGCTGCTGTCGCTGTCGGACCAGGAAAGCAACATGCACGTCTGGCAGA
CCTTCAACGCGCTCTTCATCATCCGCAGCCTGGTCAAGTACATCAACGAG
ACGGGCTCTGAGTTCCAGCTGCTGCAGCACTTTGAGGCTATGCCGAATGC
AGAGCTGCTGCAAGCGGCATTGGAGCAGCAGCAACAGACGCCGGCGGAGA
GCGCCACCATTGCCATGGAGGCCACCGAACAGTCGGCGGCGGCTGCGGTT
CCAGTGATTGTGGACGGATCTAAGTTTGAGACCTTCATCGATGCCCTGGT
GAACCTAATCGTCGTGATTCCCGTCAAGGAGTTCACCTACCACCTGCACC
TAGAGGCCGTTAACATGCTGATCACCCTGCTGTCAGTGCATCTGTTTGCC
CAACAGCCCACGGACAAGTCCATCGTGTTCCGGACGGTCTTCAAGTGTCA
GCACGCAAACGTGCTGATGTCGGCACTGCTGCATTTTGTGGCGCGTATTG
TGGAGGTGCCGCACACCATGTTTGGGTCCAGCTCTGCTGGATCCTTTGTC
TTTGGCATCGCGGAGTCGCTGCTTTCCATCTTCACGTTCCGTAAGCAGCC
AGACATACTGAAAGCGGGCCAAGCAGCCGGCGGTGGAGAGCTCTCGCAGC
GATTCCGTACCCACTACCCACTGGCCAACCAGAGCCTGTTGCTGATCCTG
ATACTGACTAACCACTGCACGGCACAGGATAACGCCTATCGGACTAGCCT
TTTCAGTTGCGCCGATTCAAAGGATTCACCAAAACAGGGAGCTGTCTCCT
TCCAGATCGACTTCTCGGCGGTATATGAGACATTGTGTACCATCGTTACC
ATCGACCAGGCCACGCTGCTGCTCTATCTGCTGCTCCATCGCAACGAGCG
CTTCTACCGGTTCGTCATGCAGCAACAGGACTTGGAGCAGTTGGTGATCC
CCATCCTCCAGACACTGTACAACGCCCCCGATAGCAACTCACATCACATC
TACATGTCCTTGATCGTGCTGCTGATCCTGAGTGAAGACGAGGGCTTCAA
CAAGAATGTGCACACCATAATGCTAAAAAACATCACATGGTATACGGAAC
GCACCATATCGGAGATATCGCTGGGCGGCATCCTAATCCTTATCGTCATC
CGCACCATACAGTACAACATGCTGAAGATGCGCGACAAGTACTTGCACAC
CAATTGCCTGGCGGCGCTGGCCAACATGTCCGGCCACTTCCGCGCTCTAC
ACCCTTACGTGGCACAGCGACTGGTCTCGCTGTTCGAAACGCTCGCTCGG
AAGCATACGCGCCTGGATGCGCAGCTCAAGGAGCCGGCCGATAGCGCAGT
GTTTGTGAACGTCTCGACGACCCCGGAAGACATGCTACAAGATCTGAGCG
TGCTGGAGGAGGTGTTGCGCATGGTGCTGGAAATCCTAAACTCCTGCCTC
ACAAACCAGTTGGTCTACTGTCCCAACTTGGTGTACACTCTTTTGTACAA
GCGCAGCGTCTTCGAGGGCTTCCGCAGTCACCACGCCTTCCAGGATGTCA
TCCAAAACATAGACATGGTTGTCGGTTTCTTCTCCTCGCGTCTGCAGCGT
GTCCAGGAGCAGAGAGGCGAGCTTGGGGTCAATGAAGTGCTCGAGGTTAT
ATCTAAAGGTGCCAGTCAGTGGTCCAGCGATCGACTGAGAAAGTTCCCGG
ATCTTAAGTTTAAGTACGTCGAGGAGGACGCTCCCGAGGAGTTCTTCATT
CCATATGTGTGGACGTTGGTCTGCAAGTACGGCTGCGTGCACTTCAGCTC
GGAGAGCATCAAGAGCGTGACCACGGACATAGCCTGCTAATATTTACTGC
TCTATCCCTTCCTCTCACGCACACACCCGGCTCCGCTTTGGTTTCCACCA
TGTTTCGATGCTTCTCCGTTTGTCTTCTGTGCGGGATTACCCGATCTTTA
AGCCATATACCACGCCCTACCTTTTGATCCAACCCAAAATGTCGAAATGC
AGTATCAAAAACAAAACAAAGCAAGAGAAATGTTGCGCTAAATAAGAGGC
ATGCGCATCTCGAACGTTGACGACAAGAGGAGACAAAGCAAACGAGAGAA
CTAACGATAATACATAGACATAGCTACGCTTATACTAATGTGTATGTTAA
CAAGCAATCCGGTCGGAAATTGTTGTTCAAGTTAAAATATAGCAACCTTG
AAACATGATCATATTTTGCCAAGCCGACTGCAATGAGCATGTTTAGAGGG
AAGTTAAGCTCCGTACGCCTACAGATCGATGTTCTAATCAATGGGAAGCA
GCAAATCCAATAAAAAGTATATATACATATTAAAGAATCGGAATATACAA
TATATGCAAAATATATTTACATTTTAGTCTATGGTAATTATATATTGTAT
TGTATTTAGCAATTGAAAACGTCGATAAACTATATATTAACTAAAGTTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA

GH02536.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8230.a 3113 CG8230.a 314..3113 1..2800 14000 100 Plus
CG8230-RA 2887 CG8230-RA 88..2887 1..2800 14000 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4833438..4834626 1419..231 5945 100 Minus
chr2R 21145070 chr2R 4831872..4832629 2798..2041 3760 99.7 Minus
chr2R 21145070 chr2R 4832882..4833381 1919..1420 2500 100 Minus
chr2R 21145070 chr2R 4834703..4834935 233..1 1150 99.6 Minus
chr2R 21145070 chr2R 4832702..4832825 2040..1917 620 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:28:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8945864..8947052 1419..231 5945 100 Minus
2R 25286936 2R 8944296..8945055 2800..2041 3800 100 Minus
2R 25286936 2R 8945308..8945807 1919..1420 2500 100 Minus
2R 25286936 2R 8947129..8947361 233..1 1165 100 Minus
2R 25286936 2R 8945128..8945251 2040..1917 620 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8947063..8948251 1419..231 5945 100 Minus
2R 25260384 2R 8945495..8946254 2800..2041 3800 100 Minus
2R 25260384 2R 8946507..8947006 1919..1420 2500 100 Minus
2R 25260384 2R 8948328..8948560 233..1 1165 100 Minus
2R 25260384 2R 8946327..8946450 2040..1917 620 100 Minus
Blast to na_te.dros performed 2019-03-15 22:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 6950..6998 2758..2710 128 73.5 Minus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 4417..4497 2786..2705 128 63.4 Minus
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 694..796 2756..2660 123 62.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6870 466..565 116 60 Plus

GH02536.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:17:23 Download gff for GH02536.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4831872..4832629 2041..2798 99 <- Minus
chr2R 4832702..4832824 1918..2040 100 <- Minus
chr2R 4832884..4833381 1420..1917 100 <- Minus
chr2R 4833438..4834623 234..1419 100 <- Minus
chr2R 4834703..4834935 1..233 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:08:07 Download gff for GH02536.complete
Subject Subject Range Query Range Percent Splice Strand
CG8230-RA 1..2100 91..2190 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:00:10 Download gff for GH02536.complete
Subject Subject Range Query Range Percent Splice Strand
CG8230-RA 1..2100 91..2190 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:13:28 Download gff for GH02536.complete
Subject Subject Range Query Range Percent Splice Strand
CG8230-RA 1..2100 91..2190 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:50:45 Download gff for GH02536.complete
Subject Subject Range Query Range Percent Splice Strand
CG8230-RA 1..2100 91..2190 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:16:32 Download gff for GH02536.complete
Subject Subject Range Query Range Percent Splice Strand
CG8230-RA 1..2100 91..2190 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:17:20 Download gff for GH02536.complete
Subject Subject Range Query Range Percent Splice Strand
CG8230-RA 1..2798 1..2798 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:00:10 Download gff for GH02536.complete
Subject Subject Range Query Range Percent Splice Strand
CG8230-RA 1..2798 1..2798 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:13:28 Download gff for GH02536.complete
Subject Subject Range Query Range Percent Splice Strand
CG8230-RA 1..2781 18..2798 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:50:45 Download gff for GH02536.complete
Subject Subject Range Query Range Percent Splice Strand
CG8230-RA 1..2798 1..2798 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:16:32 Download gff for GH02536.complete
Subject Subject Range Query Range Percent Splice Strand
CG8230-RA 1..2781 18..2798 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:17:23 Download gff for GH02536.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8944298..8945055 2041..2798 100 <- Minus
2R 8945128..8945250 1918..2040 100 <- Minus
2R 8945310..8945807 1420..1917 100 <- Minus
2R 8945864..8947049 234..1419 100 <- Minus
2R 8947129..8947361 1..233 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:17:23 Download gff for GH02536.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8944298..8945055 2041..2798 100 <- Minus
2R 8945128..8945250 1918..2040 100 <- Minus
2R 8945310..8945807 1420..1917 100 <- Minus
2R 8945864..8947049 234..1419 100 <- Minus
2R 8947129..8947361 1..233 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:17:23 Download gff for GH02536.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8944298..8945055 2041..2798 100 <- Minus
2R 8945128..8945250 1918..2040 100 <- Minus
2R 8945310..8945807 1420..1917 100 <- Minus
2R 8945864..8947049 234..1419 100 <- Minus
2R 8947129..8947361 1..233 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:13:28 Download gff for GH02536.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4831803..4832560 2041..2798 100 <- Minus
arm_2R 4832633..4832755 1918..2040 100 <- Minus
arm_2R 4832815..4833312 1420..1917 100 <- Minus
arm_2R 4833369..4834554 234..1419 100 <- Minus
arm_2R 4834634..4834866 1..233 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:22:30 Download gff for GH02536.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8945497..8946254 2041..2798 100 <- Minus
2R 8946327..8946449 1918..2040 100 <- Minus
2R 8946509..8947006 1420..1917 100 <- Minus
2R 8947063..8948248 234..1419 100 <- Minus
2R 8948328..8948560 1..233 100   Minus

GH02536.hyp Sequence

Translation from 90 to 2189

> GH02536.hyp
MGINVSRTADLGSNQWLQRFVGRQHIAHDDEAFWNGLLNYNIVLPENSQD
QLNLDSRLEALCQSFIGNNLKTGNFGSLVTVFLEKTSELLSLSDQESNMH
VWQTFNALFIIRSLVKYINETGSEFQLLQHFEAMPNAELLQAALEQQQQT
PAESATIAMEATEQSAAAAVPVIVDGSKFETFIDALVNLIVVIPVKEFTY
HLHLEAVNMLITLLSVHLFAQQPTDKSIVFRTVFKCQHANVLMSALLHFV
ARIVEVPHTMFGSSSAGSFVFGIAESLLSIFTFRKQPDILKAGQAAGGGE
LSQRFRTHYPLANQSLLLILILTNHCTAQDNAYRTSLFSCADSKDSPKQG
AVSFQIDFSAVYETLCTIVTIDQATLLLYLLLHRNERFYRFVMQQQDLEQ
LVIPILQTLYNAPDSNSHHIYMSLIVLLILSEDEGFNKNVHTIMLKNITW
YTERTISEISLGGILILIVIRTIQYNMLKMRDKYLHTNCLAALANMSGHF
RALHPYVAQRLVSLFETLARKHTRLDAQLKEPADSAVFVNVSTTPEDMLQ
DLSVLEEVLRMVLEILNSCLTNQLVYCPNLVYTLLYKRSVFEGFRSHHAF
QDVIQNIDMVVGFFSSRLQRVQEQRGELGVNEVLEVISKGASQWSSDRLR
KFPDLKFKYVEEDAPEEFFIPYVWTLVCKYGCVHFSSESIKSVTTDIAC*

GH02536.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8230-PA 699 CG8230-PA 1..699 1..699 3561 100 Plus

GH02536.pep Sequence

Translation from 90 to 2189

> GH02536.pep
MGINVSRTADLGSNQWLQRFVGRQHIAHDDEAFWNGLLNYNIVLPENSQD
QLNLDSRLEALCQSFIGNNLKTGNFGSLVTVFLEKTSELLSLSDQESNMH
VWQTFNALFIIRSLVKYINETGSEFQLLQHFEAMPNAELLQAALEQQQQT
PAESATIAMEATEQSAAAAVPVIVDGSKFETFIDALVNLIVVIPVKEFTY
HLHLEAVNMLITLLSVHLFAQQPTDKSIVFRTVFKCQHANVLMSALLHFV
ARIVEVPHTMFGSSSAGSFVFGIAESLLSIFTFRKQPDILKAGQAAGGGE
LSQRFRTHYPLANQSLLLILILTNHCTAQDNAYRTSLFSCADSKDSPKQG
AVSFQIDFSAVYETLCTIVTIDQATLLLYLLLHRNERFYRFVMQQQDLEQ
LVIPILQTLYNAPDSNSHHIYMSLIVLLILSEDEGFNKNVHTIMLKNITW
YTERTISEISLGGILILIVIRTIQYNMLKMRDKYLHTNCLAALANMSGHF
RALHPYVAQRLVSLFETLARKHTRLDAQLKEPADSAVFVNVSTTPEDMLQ
DLSVLEEVLRMVLEILNSCLTNQLVYCPNLVYTLLYKRSVFEGFRSHHAF
QDVIQNIDMVVGFFSSRLQRVQEQRGELGVNEVLEVISKGASQWSSDRLR
KFPDLKFKYVEEDAPEEFFIPYVWTLVCKYGCVHFSSESIKSVTTDIAC*

GH02536.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12727-PA 700 GF12727-PA 1..700 1..699 3478 94.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10604-PA 699 GG10604-PA 1..699 1..699 3727 99.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20269-PA 710 GH20269-PA 1..710 1..699 3360 90 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8230-PA 699 CG8230-PA 1..699 1..699 3561 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19438-PA 695 GI19438-PA 1..695 1..699 3390 92 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11092-PA 654 GL11092-PA 3..654 49..699 3200 94.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20914-PA 700 GA20914-PA 1..700 1..699 3452 94.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20649-PA 699 GM20649-PA 1..699 1..699 3723 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10123-PA 699 GD10123-PA 1..699 1..699 3717 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21190-PA 701 GJ21190-PA 1..701 1..699 3331 91.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17820-PA 729 GK17820-PA 1..729 1..699 3208 85.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22694-PA 699 GE22694-PA 1..699 1..699 3701 98.6 Plus