Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
GH02603.complete Sequence
1867 bp (1867 high quality bases) assembled on 2002-05-09
GenBank Submission: AY102653.1
> GH02603.complete
AACAAGACAACGGAGACGGAACGATGCGTATTTACCACCTGAATCTATTA
GTGCTAAGTGCCGGCCTACTGGTCCTGCTGGCCCAGTCGGGGACCACGGC
CCCCCCAGGCGGATGAGGATGTACAGCAACTGACTCTGGCGGATGTAAAT
CAGGCGGAGGAGCAGCAGGAGATGCCGGCTGTTCGCCTGGCCAGACAATT
TGGATTCGGCCGTGAAGGATTCGGCAGAGGACGCGGCGGATTCGGCGGAT
TTGGCGGAAGGCGAGGCGGCGGTGGATTCCGGAGACCCGGTTTCGGTGGC
GGTGGATTCGGCGGATTCTACCCACCGCCACCGCCCTTCTTCGGCGGCCC
CTTTTACGGCTAGGTGTTCTTAATTTAATGTGCATATATATATGTGATAC
GATCAGACCAGGATTAGCTACTAATATATCAACACGAGCTGCTGCTCTCA
TTATCTTACCAAGTGCAGAACGAGTTTTTATGTGGTAAGCACTCTTTTTT
TTATATCCATGACAAGAAGTGCTCAGCTGTATTAAATATTATGGGCGTTA
AACGGATGCGGTATATGAATATCTCTGGAAATGTTCATAAAATAACAAGA
GCACTTTATCTTTGGCCAAGTTTAAATATTCAATTTATAACTCCTTTTAG
AAAGACAAATCTAGATTTCTAATGATAAGTTGCAAACTGGCAGAGCTTTT
AGTCAAAATCAAAAGAAGTCTCTTCTGTAATTATCAAAACAAGTACTTGT
TTACTCTGCTTAAGACGGATAATTCTCATAAATAGAGTTGCTTGCATTTA
AAAAATGTTATTTTTTTTTAAATGGAATTAAGATGAGTACACTTCGTTGC
TGCATTGTTATTCTTTTTGGAATACTGATTTTTGGAGTGGCAGTGGCTGA
AAACAATAAGTTTCAGGATGAAAGGGATGAACATCATTTTCAGCCCGATG
AAGTAAAAAGTTCAGATGAAGCTATAGAACGGATACGACGTCAGATTGGA
GCTTTTGGAATTGGCGCTGGATTTTATGGAGGAAGGCATGTTGATTCAAT
CGGTAATCCCTATTATGGGGCTCCATATGGAAATTCCTACTTTGTTCAAC
CTTACTGGCATTACTTCCATGATCGCAGATTTGGAGCCAACTACGGTTTC
GGTGGACATTTCTATGGTCGCTAGACAAATTTTGTGCTCAACGTCAGTCG
ATGTCGACTTAATAAAGTTAAACATTAAAATATATAAGCACTGTGGCTAA
AAAGGGTTGATCGGAGGGGGTGGATTTGCCCAAGGGCGAAGCTGAAATTA
TAAAAATTTCATTTCAAATCACGTTGAGTGACATGCAGACTGAGCACAGG
ACAAGAAAACTTAATCAGCGATGTTAACGATGTCAGGCTGCGGGAAACAG
GATGTCATTCTGTACCATCAAATGGCTCCATTCCGGGTCGCGTACTCGTA
TTTTATTCCGTTCTCTACTTTCTTTATCCTTAATTTTCTTCTTTTTTTTC
GTTTTATTTTCTAATTCATATGCGTTTCAAGTTTTAATTACGTGGGAAAA
AAGGCGAATGAACAAACGAGCGGGTGCCATCCAGGGACCAAAGCCAGGCA
GGACCACGGCCAGGACTTCTTCTGGCTCCTTTTTGGCTTGACTGACAGAC
AGGAGCCGCAGCAGAAGAGCAGCTCAACATGAAAATAACAAAATACGCCC
AATCAGACCAGCCAGAAATGGAAACGAGACGATACACACAGGGTAGATAG
ACGACCAGACCTAGAGACAGACGGCTACTCGTACTACAGCTACAGCCACA
AAAAAAGGCAAAAAAATTAAGTAGCGAAATCAGCGGGTGAAATGAAAAAA
AAAAAAAAAAAAAAAAA
GH02603.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:09:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9759.b | 1259 | CG9759.b | 39..521 | 1..484 | 2380 | 99.7 | Plus |
CG9759.a | 590 | CG9759.a | 39..521 | 1..484 | 2380 | 99.7 | Plus |
CG9759-RA | 494 | CG9759-RA | 26..494 | 1..470 | 2310 | 99.7 | Plus |
CG9759.b | 1259 | CG9759.b | 521..857 | 1531..1867 | 1655 | 99.4 | Plus |
CG9759.a | 590 | CG9759.a | 521..590 | 1531..1600 | 350 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:01:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 9432293..9434136 | 1844..1 | 9080 | 99.7 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:28:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:01:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13607356..13609221 | 1867..1 | 9255 | 99.8 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:40:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 13348187..13350052 | 1867..1 | 9265 | 99.8 | Minus |
Blast to na_te.dros performed 2019-03-16 18:01:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 2038..2183 | 1294..1434 | 140 | 59.9 | Plus |
GH02603.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:02:27 Download gff for
GH02603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 9432298..9434136 | 1..1839 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:08:19 Download gff for
GH02603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9759-RB | 1..339 | 24..363 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:52:54 Download gff for
GH02603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42761-RA | 1..342 | 833..1174 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:06:58 Download gff for
GH02603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42761-RA | 1..342 | 833..1174 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:45:28 Download gff for
GH02603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9759-RB | 1..339 | 24..363 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:26:33 Download gff for
GH02603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9759-RA | 1..339 | 24..363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:31:10 Download gff for
GH02603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9759-RA | 26..1868 | 1..1844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:52:54 Download gff for
GH02603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9759-RA | 26..494 | 1..470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:06:58 Download gff for
GH02603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9759-RA | 26..494 | 1..470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:45:28 Download gff for
GH02603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9759-RA | 26..1868 | 1..1844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:26:33 Download gff for
GH02603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9759-RC | 26..1868 | 1..1844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:02:27 Download gff for
GH02603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13607379..13609221 | 1..1844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:02:27 Download gff for
GH02603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13607379..13609221 | 1..1844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:02:27 Download gff for
GH02603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13607379..13609221 | 1..1844 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:06:58 Download gff for
GH02603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9433101..9434943 | 1..1844 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:17:55 Download gff for
GH02603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13348210..13350052 | 1..1844 | 99 | | Minus |
GH02603.hyp Sequence
Translation from 2 to 362
> GH02603.hyp
QDNGDGTMRIYHLNLLVLSAGLLVLLAQSGTTAPQADEDVQQLTLADVNQ
AEEQQEMPAVRLARQFGFGREGFGRGRGGFGGFGGRRGGGGFRRPGFGGG
GFGGFYPPPPPFFGGPFYG*
GH02603.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:50:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9759-PB | 112 | CG9759-PB | 1..112 | 8..119 | 604 | 100 | Plus |
CG9759-PC | 112 | CG9759-PC | 1..112 | 8..119 | 604 | 100 | Plus |
CG9759-PA | 112 | CG9759-PA | 1..112 | 8..119 | 604 | 100 | Plus |
CG17738-PA | 110 | CG17738-PA | 8..110 | 21..119 | 141 | 43.4 | Plus |
GH02603.pep Sequence
Translation from 832 to 1173
> GH02603.pep
MSTLRCCIVILFGILIFGVAVAENNKFQDERDEHHFQPDEVKSSDEAIER
IRRQIGAFGIGAGFYGGRHVDSIGNPYYGAPYGNSYFVQPYWHYFHDRRF
GANYGFGGHFYGR*
GH02603.pep Blast Records
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:00:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD20490-PA | 113 | GD20490-PA | 1..113 | 1..113 | 518 | 88.5 | Plus |
GH02603.pep2 Sequence
Translation from 1401 to 1640
> GH02603.pep2
MSFCTIKWLHSGSRTRILFRSLLSLSLIFFFFFVLFSNSYAFQVLITWEK
RRMNKRAGAIQGPKPGRTTARTSSGSFLA*
Sequence GH02603.pep2 has no blast hits.