Clone GH02649 Report

Search the DGRC for GH02649

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:26
Well:49
Vector:pOT2
Associated Gene/TranscriptCG7366-RA
Protein status:GH02649.pep: gold
Preliminary Size:1481
Sequenced Size:1337

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7366 2001-01-01 Release 2 assignment
CG7366 2001-09-19 Blastp of sequenced clone
CG7366 2003-01-01 Sim4 clustering to Release 3
CG7366 2008-04-29 Release 5.5 accounting
CG7366 2008-08-15 Release 5.9 accounting
CG7366 2008-12-18 5.12 accounting

Clone Sequence Records

GH02649.complete Sequence

1337 bp (1337 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058272

> GH02649.complete
ATTCTAACCCACAAAAAATCTAAAAAATATAAAATTAAAATTTCAAAAAC
CTACAAAAAAGCATCCAAGAATGACTCAGTTAAGCGAGTTCGCCCTGGAC
AGCCACTTTGCCTCCGAGCTGCGCAGCCTGCAGTTGTATTCCAAGGAGCA
CCCTGTCAGCCAAGATGACCACGACATAAGTCAGCGTTGGATGCAGCACT
TCCAAAACGCCAAGGGTTTGGATAAATTCGCACGAAACTGCATGCTGCTG
ATGATGTGCGAACAGTTGCGAGATCTTGGCCACTTGAGCAAACCCTTCAC
CGAACTGAAGAACTTGAGTCGCCCCATGGACGATTTGCTGAACGAGTACC
ATGGGACGACTACTGTGGAGGAGGGGCAAATGTCGCCGGTTGAAGATATT
GAGGACTCGGACACCAATGTCTCCAACTATGGCAGTGGCAGTAGTTCTTT
CTCCCCTGGGGTGCCCTATCCCATTTCCACGCCCGAGTTCGAGAGCATTA
AGCGGTCTAACCAGGATCTGCTTAAGGAAATCGACTCGCTGCACTGTCGC
ACGGTGGAAGCGGAAAAGCTATACCTTAGCAGGAGCCAAATTCTGGAGAA
GCAGATTGCCGAGAAGTCGGCGTTGGCCAAAACGAAACTTCCCCAGGAGG
GTATCTATCAATCCTGCCGTGCGGCCTGCCAGCTTCTGAAAAAATGGCCA
GGCGAGTCAGTGCGACTCAATTTTCTGACCACCTGCCTGGAGCCCTTTCT
GCGGAACGATATGATCACCAGCTTGCAGATCTCCGAGTTGGATCTCAGTT
TCGAGAATACTCTGAATGCCATGGTGAAACGGGCCTGCTCGCGAAGGGAC
GACAATGTCCGCATGCTATATGACCAAATTTTGTGCCAGGAAAAGAACGA
CCTGAAGGAGAAGGAGGACAAGGTGCGACGATTACAGGAATCCACAAGGT
TGGAGCGCCAAAGATTGCGCGCTCTAGCCGAGGACTTGAAACGTCGAGAG
AATTTCATTTGGAGGCACCAGGCCGTCGCCACACTGGCAGTTGCAGGACT
TTCCTCCGATGACCAACGCAGTCCCAGTTCCACTAACTTAAAGTGTGACT
CATGTCTGAAAGAAATGTCCATTAGAAAAGGACCTCTGGATCCCATAGGC
AGGAGCAGCAAAGGTGAAAAAACCAATGATGTCGTGGATCTGGAGAAGTT
ATCTGACGCACTGAGCGATATGTCCATAGACAAATGGTAATCCTCTAGCG
ACAGCACACTTTTATAAATATATATATTTTTATTTTCCTGTTGGCATCAA
TAAATCGTTGAGTTGCTTTAAAAAAAAAAAAAAAAAA

GH02649.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7366-RA 1324 CG7366-RA 1..1324 1..1324 6620 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8193033..8194351 1319..1 6565 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:28:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8201073..8202396 1324..1 6620 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8194173..8195496 1324..1 6620 100 Minus
Blast to na_te.dros performed 2019-03-16 02:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 1669..1720 1314..1261 130 74.1 Minus
gypsy12 10218 gypsy12 GYPSY12 10218bp 9551..9602 1314..1261 130 74.1 Minus

GH02649.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:57:47 Download gff for GH02649.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8193033..8194351 1..1319 95   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:08:23 Download gff for GH02649.complete
Subject Subject Range Query Range Percent Splice Strand
CG7366-RA 1..1170 71..1240 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:10:13 Download gff for GH02649.complete
Subject Subject Range Query Range Percent Splice Strand
CG7366-RA 1..1170 71..1240 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:24:18 Download gff for GH02649.complete
Subject Subject Range Query Range Percent Splice Strand
CG7366-RA 1..1170 71..1240 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:41:04 Download gff for GH02649.complete
Subject Subject Range Query Range Percent Splice Strand
CG7366-RA 1..1170 71..1240 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:25:51 Download gff for GH02649.complete
Subject Subject Range Query Range Percent Splice Strand
CG7366-RA 1..1170 71..1240 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:01:16 Download gff for GH02649.complete
Subject Subject Range Query Range Percent Splice Strand
CG7366-RA 1..1319 1..1319 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:10:13 Download gff for GH02649.complete
Subject Subject Range Query Range Percent Splice Strand
CG7366-RA 1..1319 1..1319 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:18 Download gff for GH02649.complete
Subject Subject Range Query Range Percent Splice Strand
CG7366-RA 22..1340 1..1319 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:41:04 Download gff for GH02649.complete
Subject Subject Range Query Range Percent Splice Strand
CG7366-RA 1..1319 1..1319 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:25:51 Download gff for GH02649.complete
Subject Subject Range Query Range Percent Splice Strand
CG7366-RA 22..1340 1..1319 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:57:47 Download gff for GH02649.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8201078..8202396 1..1319 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:57:47 Download gff for GH02649.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8201078..8202396 1..1319 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:57:47 Download gff for GH02649.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8201078..8202396 1..1319 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:18 Download gff for GH02649.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8194178..8195496 1..1319 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:18:41 Download gff for GH02649.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8194178..8195496 1..1319 100   Minus

GH02649.pep Sequence

Translation from 70 to 1239

> GH02649.pep
MTQLSEFALDSHFASELRSLQLYSKEHPVSQDDHDISQRWMQHFQNAKGL
DKFARNCMLLMMCEQLRDLGHLSKPFTELKNLSRPMDDLLNEYHGTTTVE
EGQMSPVEDIEDSDTNVSNYGSGSSSFSPGVPYPISTPEFESIKRSNQDL
LKEIDSLHCRTVEAEKLYLSRSQILEKQIAEKSALAKTKLPQEGIYQSCR
AACQLLKKWPGESVRLNFLTTCLEPFLRNDMITSLQISELDLSFENTLNA
MVKRACSRRDDNVRMLYDQILCQEKNDLKEKEDKVRRLQESTRLERQRLR
ALAEDLKRRENFIWRHQAVATLAVAGLSSDDQRSPSSTNLKCDSCLKEMS
IRKGPLDPIGRSSKGEKTNDVVDLEKLSDALSDMSIDKW*

GH02649.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24699-PA 402 GF24699-PA 1..398 1..385 595 36.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15102-PA 391 GG15102-PA 1..391 1..389 1427 71 Plus
Dere\GG14288-PA 554 GG14288-PA 1..94 1..95 153 36.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15980-PA 482 GH15980-PA 1..93 1..94 212 43.2 Plus
Dgri\GH15980-PA 482 GH15980-PA 235..437 140..336 208 30.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7366-PA 389 CG7366-PA 1..389 1..389 2005 100 Plus
CG8006-PA 503 CG8006-PA 1..94 1..95 180 40 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16631-PA 475 GI16631-PA 1..388 1..320 360 29.8 Plus
Dmoj\GI16772-PA 573 GI16772-PA 2..99 1..99 153 32 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20300-PA 588 GA20300-PA 5..172 4..154 221 33.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24959-PA 385 GM24959-PA 1..385 1..389 1893 91 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13009-PA 367 GD13009-PA 1..367 1..389 1723 87.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12886-PA 491 GJ12886-PA 1..388 1..337 482 32.4 Plus
Dvir\GJ12517-PA 430 GJ12517-PA 1..94 1..95 157 33.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17010-PA 385 GK17010-PA 1..320 1..321 400 33.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21327-PA 387 GE21327-PA 1..387 1..387 1371 71 Plus
Dyak\GE20718-PA 560 GE20718-PA 1..100 1..101 155 32.7 Plus

GH02649.hyp Sequence

Translation from 70 to 1239

> GH02649.hyp
MTQLSEFALDSHFASELRSLQLYSKEHPVSQDDHDISQRWMQHFQNAKGL
DKFARNCMLLMMCEQLRDLGHLSKPFTELKNLSRPMDDLLNEYHGTTTVE
EGQMSPVEDIEDSDTNVSNYGSGSSSFSPGVPYPISTPEFESIKRSNQDL
LKEIDSLHCRTVEAEKLYLSRSQILEKQIAEKSALAKTKLPQEGIYQSCR
AACQLLKKWPGESVRLNFLTTCLEPFLRNDMITSLQISELDLSFENTLNA
MVKRACSRRDDNVRMLYDQILCQEKNDLKEKEDKVRRLQESTRLERQRLR
ALAEDLKRRENFIWRHQAVATLAVAGLSSDDQRSPSSTNLKCDSCLKEMS
IRKGPLDPIGRSSKGEKTNDVVDLEKLSDALSDMSIDKW*

GH02649.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7366-PA 389 CG7366-PA 1..389 1..389 2005 100 Plus
CG8006-PA 503 CG8006-PA 1..94 1..95 180 40 Plus