Clone GH02671 Report

Search the DGRC for GH02671

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:26
Well:71
Vector:pOT2
Associated Gene/TranscriptlqfR-RC
Protein status:GH02671.pep: gold
Preliminary Size:2924
Sequenced Size:2709

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13853 2001-01-01 Release 2 assignment
CG13854 2001-01-01 Release 2 assignment
CG31170 2001-10-10 Blastp of sequenced clone
CG31170 2003-01-01 Sim4 clustering to Release 3
epsin-like 2008-04-29 Release 5.5 accounting
epsin-like 2008-08-15 Release 5.9 accounting
epsin-like 2008-12-18 5.12 accounting

Clone Sequence Records

GH02671.complete Sequence

2709 bp (2709 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060606

> GH02671.complete
AGCTCACCAAATATTAGCTGCTGTGATTTTGTTTTACAATTTTCGTTTAA
ATTTTTACATTTTTGTTTGCGGAAAGCGCGGGTGCGAGACAGGTGCGCCG
TTTCCATGCAAAAGTGCAAATCGTCAGCTGCAAAACAGTCAGAAAACGGC
ACGCCAAGCGAAAACGAGTTCGACGTCTTGTTGTAGTTGGATTTTCCAGC
CACTTTTCGACGAGATTGTGTGAAAAATTCCGTAGCATTCAATAGTCTCA
AAATGGTGGATAAATTCATCAGCATGTGGAAAGTGCGCGAATTGGCGGAC
AAGGTCACCAATGTCGTGATGAATTACACGGAAACGGAGGGCAAGGTGCG
GGAGGCCACCAACGATGATCCTTGGGGGCCTACAGGACCCCTCATGCAGG
AATTGGCCTATTCCACCTTCTCATACGAAACATTCCCGGAGGTGATGTCC
ATGCTGTGGAAGCGCATGCTGCAGGACAATAAAACCAACTGGCGACGCAC
GTACAAGAGCCTCCTTCTGCTAAACTATTTGGTGCGAAACGGCTCTGAAC
GGGTGGTAACCTCCTCTCGGGAGCACATCTACGATCTGCGCTCGCTGGAG
AACTATACATTCACCGACGAGGGCGGCAAGGATCAGGGTATTAATGTTAG
GCATAAGGTACGAGAGCTTATAGACTTTATTCAGGATGATGATCGTTTGC
GCGAGGAGCGCAAAAAGGCGAAGAAGAACAAGGACAAGTACATCGGCATG
AGCAGCGACGCCATGGGCATGCGAAGCGGTGGCTACAGCGGCTATAGCGG
TGGATCTGGAGGAGGCGGCGGTGGCAGCGGTGGCTACAATGATGGCGACT
ATCGCTCTAGTCGTGGAGACAATTGGTACTCCGACAAAAGCGCCGACAAG
GATCGGTATGAGGATGATGATACTCACTACGATGGAGAGCGAGAGGGATC
CGATAGCGACTCACCCAGTCCAAGACGTAACTATCGATACAATGACCGTG
CGAGTCCTGCCGAAGTAGCCAGCGAGGCCAAACCTTCCAGCCTCAACATG
AACATTCGTTCGAAGACCGTCAGTTCCCCTGTCTCCAAGCAGCCCACTTC
AACGGCTTCTGCCAAGCCAGCGCTGTCCCAGAAGAAGATCGATCTGGGTG
CGGCAGCAAACTTTGGAAAGCCAGCTCCTGGCGGTGCTGCTGGCATTCAC
TCACCAACTCACCGTGACACTCCCACCAGCGTGGACTTGATGGGCGGCGC
TTCGCCATCGCCGTCTACTTCCAAGGCAAACAATAATACGCAAAGCAATA
ACAACGATCTGCTGGACGATCTGTTCAAGACCTGCTCGCCACCGCCGGGG
CAGGAGAAGACGCTGAACAGTGCTGCCGTGATTGTGGATGACGATGATGA
CTTCAATCCGCGTGCCAGCGATGCTAGCCAGCAGGAATTCGGCGACTTCG
CCTCTGCTTTCGGGCAGCCCTCGGCGGGATCGACGATCAGCGAGCCACCA
TCAACGGGCCTGGTTCCGGCTGCGAACGATGAGTTCGCCGACTTTGCGGC
GTTCCAAGGCTCGACAACGTCGACATCTGCGCTGGACGGTAATTTGCTGA
AGACTGCCACGCCGGCGAACGATTCGTTTGACCTGTTTAATTCAGCTCCC
ACCTCGACGGCAGCAGCCACAACGGCTACAGATCTCCTGGCAGGCCTGGG
CGATCTGTCCATTCACCAAAGCATGCCCATGGACAATATGATGCCTCCCA
TTCCCGCCGTCACGGGCAATAATCTGCTCCAGCCCATGTCGGTGACCAAT
AATAACAATAATACCAACGGAGGCGCAGTCCCCGCCGCTGCCAGTGTCCA
GTCTACCGCTGTGGGCGCCACCTGGTCGGGCGACCTGAAGGGCGGCAAGA
TGAACATTGACCTGGACAATCTGCTGATGAGCAAGTCGGGCAAGCCCAGT
GCCCCGGCCCCTTCGATGAATGCCCTGAAGACCAACAGTCCGGCAAAGGC
GCCACTGAATGTGCAGACGGGTGGCGGATTCCCTGGACTGTCGCCAATGA
CCAGTCCGAACATTTTTGGGGCTCCGGCACCGCAGCAAAGCATTCCACAA
AACCAATCAGCATTTGCCAACTTTGGAGCTTTCCAGCAGCAGCAGCAGAA
TCACAGCAATAATAACAATAATAGCTCGTCGGCATTCGACTTGTTTCAAT
GATATTTTTTAGCCTAATTTAACCCAACCAACCTACTACCCAAAATGTCC
ACTCTCACATTCACATTTCCACGATCGCTAAACTTGTCAGTTCTATATAT
TATTTACGTTTTCCTTTCCCCTTGCTGTACAAAGTTTGCGACACGTGCAA
TTTGTTTCTAAATTCGTTGTTAAACAATTTACCCCCGATGCAATTTTCCG
GATCAAACCCATTAATTCCACATCCGTCCTGATCGTCCACTCGGAATTTG
AAAGTCGTCATCAAATGCAATACACAGAGTAGTTGAATAATGGTTGTACT
AAACGGATTCGTTAGCACAACGCGCGGACGGACGGCTGAGCGATCCAACA
TTGAAATTGTTAAACAAAATACTACACGTAATAAAATCAAACAATTTTAG
CAATAGTTAACGTTACGATGTGTCTGTATATAAATTGAATGTAAAGCAAA
TATGAAATATAAAACAATTGAAACCAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA

GH02671.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
lqfR-RC 2794 lqfR-RC 115..2791 1..2677 13385 100 Plus
lqfR.a 2712 lqfR.a 29..2709 1..2677 13320 99.8 Plus
lqfR.b 2444 lqfR.b 70..2441 306..2677 11860 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18241651..18242590 1732..2675 4535 98.9 Plus
chr3R 27901430 chr3R 18237064..18237823 973..1732 3770 99.7 Plus
chr3R 27901430 chr3R 18236452..18236823 506..877 1800 98.9 Plus
chr3R 27901430 chr3R 18234868..18235172 1..305 1525 100 Plus
chr3R 27901430 chr3R 18236192..18236393 306..507 980 99 Plus
chr3R 27901430 chr3R 18236907..18237003 878..974 485 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:28:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22418108..22419053 1732..2677 4730 100 Plus
3R 32079331 3R 22413518..22414277 973..1732 3800 100 Plus
3R 32079331 3R 22412908..22413279 506..877 1860 100 Plus
3R 32079331 3R 22411333..22411637 1..305 1525 100 Plus
3R 32079331 3R 22412649..22412850 306..507 1010 100 Plus
3R 32079331 3R 22413361..22413457 878..974 485 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22158939..22159884 1732..2677 4730 100 Plus
3R 31820162 3R 22154349..22155108 973..1732 3800 100 Plus
3R 31820162 3R 22153739..22154110 506..877 1860 100 Plus
3R 31820162 3R 22152164..22152468 1..305 1525 100 Plus
3R 31820162 3R 22153480..22153681 306..507 1010 100 Plus
3R 31820162 3R 22154192..22154288 878..974 485 100 Plus
Blast to na_te.dros performed 2019-03-16 14:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 660..717 871..811 118 68.9 Minus

GH02671.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:15:01 Download gff for GH02671.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18236192..18236393 306..507 99 -> Plus
chr3R 18234868..18235172 1..305 100 -> Plus
chr3R 18236454..18236721 508..775 99 == Plus
chr3R 18236796..18236823 850..877 100 -> Plus
chr3R 18236907..18237003 878..974 100 -> Plus
chr3R 18237066..18237823 975..1732 99 -> Plus
chr3R 18241652..18242590 1733..2675 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:08:29 Download gff for GH02671.complete
Subject Subject Range Query Range Percent Splice Strand
epsin-like-RC 1..1950 253..2202 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:55:48 Download gff for GH02671.complete
Subject Subject Range Query Range Percent Splice Strand
lqfR-RC 1..1950 253..2202 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:25:11 Download gff for GH02671.complete
Subject Subject Range Query Range Percent Splice Strand
lqfR-RC 1..1950 253..2202 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:24:56 Download gff for GH02671.complete
Subject Subject Range Query Range Percent Splice Strand
epsin-like-RC 1..1950 253..2202 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:28:57 Download gff for GH02671.complete
Subject Subject Range Query Range Percent Splice Strand
lqfR-RC 1..1950 253..2202 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:41:38 Download gff for GH02671.complete
Subject Subject Range Query Range Percent Splice Strand
epsin-like-RC 1..2675 1..2675 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:55:48 Download gff for GH02671.complete
Subject Subject Range Query Range Percent Splice Strand
lqfR-RC 1..2675 1..2675 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:11 Download gff for GH02671.complete
Subject Subject Range Query Range Percent Splice Strand
lqfR-RC 33..2707 1..2675 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:24:56 Download gff for GH02671.complete
Subject Subject Range Query Range Percent Splice Strand
epsin-like-RC 1..2675 1..2675 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:57 Download gff for GH02671.complete
Subject Subject Range Query Range Percent Splice Strand
lqfR-RC 33..2707 1..2675 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:15:01 Download gff for GH02671.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22413361..22413457 878..974 100 -> Plus
3R 22411333..22411637 1..305 100 -> Plus
3R 22412649..22412850 306..507 100 -> Plus
3R 22412910..22413279 508..877 100 -> Plus
3R 22413520..22414277 975..1732 100 -> Plus
3R 22418109..22419051 1733..2675 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:15:01 Download gff for GH02671.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22413361..22413457 878..974 100 -> Plus
3R 22411333..22411637 1..305 100 -> Plus
3R 22412649..22412850 306..507 100 -> Plus
3R 22412910..22413279 508..877 100 -> Plus
3R 22413520..22414277 975..1732 100 -> Plus
3R 22418109..22419051 1733..2675 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:15:01 Download gff for GH02671.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22413361..22413457 878..974 100 -> Plus
3R 22411333..22411637 1..305 100 -> Plus
3R 22412649..22412850 306..507 100 -> Plus
3R 22412910..22413279 508..877 100 -> Plus
3R 22413520..22414277 975..1732 100 -> Plus
3R 22418109..22419051 1733..2675 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:11 Download gff for GH02671.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18237055..18237359 1..305 100 -> Plus
arm_3R 18238371..18238572 306..507 100 -> Plus
arm_3R 18238632..18239001 508..877 100 -> Plus
arm_3R 18239083..18239179 878..974 100 -> Plus
arm_3R 18239242..18239999 975..1732 100 -> Plus
arm_3R 18243831..18244773 1733..2675 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:02:07 Download gff for GH02671.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22153480..22153681 306..507 100 -> Plus
3R 22152164..22152468 1..305 100 -> Plus
3R 22153741..22154110 508..877 100 -> Plus
3R 22154192..22154288 878..974 100 -> Plus
3R 22154351..22155108 975..1732 100 -> Plus
3R 22158940..22159882 1733..2675 100   Plus

GH02671.pep Sequence

Translation from 252 to 2201

> GH02671.pep
MVDKFISMWKVRELADKVTNVVMNYTETEGKVREATNDDPWGPTGPLMQE
LAYSTFSYETFPEVMSMLWKRMLQDNKTNWRRTYKSLLLLNYLVRNGSER
VVTSSREHIYDLRSLENYTFTDEGGKDQGINVRHKVRELIDFIQDDDRLR
EERKKAKKNKDKYIGMSSDAMGMRSGGYSGYSGGSGGGGGGSGGYNDGDY
RSSRGDNWYSDKSADKDRYEDDDTHYDGEREGSDSDSPSPRRNYRYNDRA
SPAEVASEAKPSSLNMNIRSKTVSSPVSKQPTSTASAKPALSQKKIDLGA
AANFGKPAPGGAAGIHSPTHRDTPTSVDLMGGASPSPSTSKANNNTQSNN
NDLLDDLFKTCSPPPGQEKTLNSAAVIVDDDDDFNPRASDASQQEFGDFA
SAFGQPSAGSTISEPPSTGLVPAANDEFADFAAFQGSTTSTSALDGNLLK
TATPANDSFDLFNSAPTSTAAATTATDLLAGLGDLSIHQSMPMDNMMPPI
PAVTGNNLLQPMSVTNNNNNTNGGAVPAAASVQSTAVGATWSGDLKGGKM
NIDLDNLLMSKSGKPSAPAPSMNALKTNSPAKAPLNVQTGGGFPGLSPMT
SPNIFGAPAPQQSIPQNQSAFANFGAFQQQQQNHSNNNNNSSSAFDLFQ*

GH02671.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18447-PA 642 GF18447-PA 1..642 1..649 2485 83.1 Plus
Dana\GF10652-PA 831 GF10652-PA 5..203 11..231 397 35.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:00:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11132-PA 632 GG11132-PA 1..632 1..649 3237 95.1 Plus
Dere\GG14438-PA 829 GG14438-PA 5..203 11..231 392 35.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13377-PA 655 GH13377-PA 1..655 1..649 1965 73.1 Plus
Dgri\GH20417-PA 509 GH20417-PA 1..496 1..493 1780 80.3 Plus
Dgri\GH14895-PA 796 GH14895-PA 5..203 11..231 398 34.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
lqfR-PC 649 CG42250-PC 1..649 1..649 3393 100 Plus
lqfR-PD 1415 CG42250-PD 1..493 1..493 2578 100 Plus
lqf-PF 640 CG8532-PF 5..625 11..635 405 25.2 Plus
lqf-PK 784 CG8532-PK 5..638 11..643 405 24.8 Plus
lqf-PH 784 CG8532-PH 5..638 11..643 405 24.8 Plus
lqf-PC 784 CG8532-PC 5..638 11..643 405 24.8 Plus
lqf-PJ 791 CG8532-PJ 12..645 11..643 405 24.8 Plus
lqf-PL 630 CG8532-PL 5..610 11..622 401 25.1 Plus
lqf-PG 630 CG8532-PG 5..610 11..622 401 25.1 Plus
lqf-PI 637 CG8532-PI 12..617 11..622 401 25.1 Plus
lqf-PD 824 CG8532-PD 5..610 11..622 401 25.1 Plus
lqf-PB 824 CG8532-PB 5..610 11..622 401 25.1 Plus
lqf-PA 831 CG8532-PA 12..617 11..622 401 25.1 Plus
lqf-PE 831 CG8532-PE 12..617 11..622 401 25.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22384-PA 655 GI22384-PA 1..655 1..649 2075 75.4 Plus
Dmoj\GI12871-PA 807 GI12871-PA 5..203 11..231 398 34.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24213-PA 659 GL24213-PA 1..659 1..649 2208 76 Plus
Dper\GL26547-PA 832 GL26547-PA 5..203 11..231 400 34.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16061-PD 676 GA16061-PD 1..676 1..649 2330 79.7 Plus
Dpse\GA16061-PC 1428 GA16061-PC 1..501 1..493 1941 84.8 Plus
Dpse\GA21142-PA 859 GA21142-PA 5..203 11..231 402 34.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26431-PA 632 GM26431-PA 1..632 1..649 3256 95.7 Plus
Dsec\GM14854-PA 826 GM14854-PA 5..167 11..178 395 41.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20948-PA 153 GD20948-PA 1..153 496..649 758 98.1 Plus
Dsim\GD14024-PA 826 GD14024-PA 5..167 11..178 396 41.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24417-PA 649 GJ24417-PA 1..649 1..649 2037 75.4 Plus
Dvir\GJ13012-PA 797 GJ13012-PA 5..203 11..231 403 35.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13071-PA 1565 GK13071-PA 1..491 1..493 1746 75.8 Plus
Dwil\GK17392-PA 821 GK17392-PA 5..203 11..231 399 35.3 Plus
Dwil\GK13071-PA 1565 GK13071-PA 1323..1565 420..649 344 51 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10298-PA 635 GE10298-PA 1..635 1..649 3239 94.9 Plus
Dyak\GE21628-PA 830 GE21628-PA 5..167 11..178 395 41.7 Plus

GH02671.hyp Sequence

Translation from 252 to 2201

> GH02671.hyp
MVDKFISMWKVRELADKVTNVVMNYTETEGKVREATNDDPWGPTGPLMQE
LAYSTFSYETFPEVMSMLWKRMLQDNKTNWRRTYKSLLLLNYLVRNGSER
VVTSSREHIYDLRSLENYTFTDEGGKDQGINVRHKVRELIDFIQDDDRLR
EERKKAKKNKDKYIGMSSDAMGMRSGGYSGYSGGSGGGGGGSGGYNDGDY
RSSRGDNWYSDKSADKDRYEDDDTHYDGEREGSDSDSPSPRRNYRYNDRA
SPAEVASEAKPSSLNMNIRSKTVSSPVSKQPTSTASAKPALSQKKIDLGA
AANFGKPAPGGAAGIHSPTHRDTPTSVDLMGGASPSPSTSKANNNTQSNN
NDLLDDLFKTCSPPPGQEKTLNSAAVIVDDDDDFNPRASDASQQEFGDFA
SAFGQPSAGSTISEPPSTGLVPAANDEFADFAAFQGSTTSTSALDGNLLK
TATPANDSFDLFNSAPTSTAAATTATDLLAGLGDLSIHQSMPMDNMMPPI
PAVTGNNLLQPMSVTNNNNNTNGGAVPAAASVQSTAVGATWSGDLKGGKM
NIDLDNLLMSKSGKPSAPAPSMNALKTNSPAKAPLNVQTGGGFPGLSPMT
SPNIFGAPAPQQSIPQNQSAFANFGAFQQQQQNHSNNNNNSSSAFDLFQ*

GH02671.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
lqfR-PC 649 CG42250-PC 1..649 1..649 3393 100 Plus
lqfR-PD 1415 CG42250-PD 1..493 1..493 2578 100 Plus
lqf-PF 640 CG8532-PF 5..625 11..635 405 25.2 Plus
lqf-PL 630 CG8532-PL 5..610 11..622 401 25.1 Plus
lqf-PG 630 CG8532-PG 5..610 11..622 401 25.1 Plus