Clone GH02702 Report

Search the DGRC for GH02702

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:27
Well:2
Vector:pOT2
Associated Gene/TranscriptAmun-RH
Protein status:GH02702.pep: gold
Preliminary Size:3123
Sequenced Size:3070

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2446 2001-01-01 Release 2 assignment
CG2446 2002-07-14 Blastp of sequenced clone
CG2446 2003-01-01 Sim4 clustering to Release 3
CG2446 2008-04-29 Release 5.5 accounting
CG2446 2008-08-15 Release 5.9 accounting
CG2446 2008-12-18 5.12 accounting

Clone Sequence Records

GH02702.complete Sequence

3070 bp (3070 high quality bases) assembled on 2002-07-14

GenBank Submission: BT001379

> GH02702.complete
AGATAGAACGACAACTCCTGTTCCCGGTTCGTCGTCGTTCGTCATTCCCA
TATTCGCTTCTCGTATTCCCTCCCATTCCCATTCGCAATCCCAATTCCCA
ATTCCCGTCACACGAGTTAGCAGCACATCGCACAGCTGCATCGCTCCGCT
CCGATCCTTTTTAATTTTTTGTTGTGCCTTCGGTGGCGTGCTCATTTCGA
GAACAGAGTAACCCCTTTTTATTTGTCAGTTGTCAACGGCGCCCCTGCAG
GCAGAAAGCAGAAACTGAAACAGCAGAGGAAGAAGAAGAAGCAGCACAGC
ACGGGCACAGCACGAAGCACGCAGCACAGCACAAGCACAGAGGCGAAGCG
AAGCAAAGCAAAGCAGAGGCAACACAGAAAAACAGCAAAGCATTGGAGTA
GTTGTTTGGATGTGGACGGAAAGGAAGACTGGCGGCGACTAACTAAAAGT
ACGTTGACAGGAGCAGCTCGGAACGGACAGGAAAAGCAGGAGACTAAACA
GTAAGCAATAAATTGATTTGGCGTATAGTAGCTTACACCAAAGTACATAT
ATTGCCGCATATATAGCCAGCCGGTCACTTGCGGATCAGCCAACGTCCTG
GGCCCCAAGGCGATAGATACCACGATAAGGAGATACAGCGATACCACCAA
TCATTAGCAGGCGACAACGACACATCCGCATCCGCAGAAGATGTCCAACG
GCAAGGCGACGGTCTCGTTCTTCGAGACCGGGAGCACCAAACAGTTCGAG
TACTGCTACCAGCTCTATCCCCAGGTTCTTAAGCTAAAGGCCGAGAAGCG
CTGCAAGAAGCCGCAAGAGCTGATCCGCCTGGATCAGTGGTATCAGAATG
AACTGCCCAAATTGATTAAGGCACGCGGCAAGGACGCGCATATGGTATAC
GATGAGCTCGTCCAGTCGATGAAGTGGAAGCAGTCGCGCGGCAAATTCTA
TCCGCAGCTATCCTACCTGGTCAAGGTCAACACACCGCGCGCCGTCATCC
AGGAGACAAAGAAGGCCTTCCGCAAGCTGCCCAATCTGGAGCAGGCGATC
ACAGCTTTATCGAACCTCAAGGGCGTTGGCACCACAATGGCCAGTGCACT
GCTGGCAGCCGCAGCTCCCGATTCGGCACCATTCATGGCCGACGAGTGCC
TGATGGCCATACCAGAGATCGAGGGCATCGATTACACCACCAAGGAGTAC
CTCAACTTCGTCAATCACATTCAGGCCACCGTGGAGCGCCTCAATGCGGA
GGTGGGCGGGGATACGCCGCACTGGTCGCCTCATCGCGTGGAGCTGGCCC
TCTGGTCACACTATGTGGCCAATGATCTCAGTCCCGAGATGCTCGACGAT
ATGCCGCCGCCTGGATCCGGCGCCTCCACTGGCACCGGTTCACTCAGCAC
AAACGGCAACAGCAGCAAGGTGCTCGATGGCGACGATACCAACGATGGTG
TGGGTGTTGATTTGGACGACGAAAGCCAAGGAGCAGGCGGTCGCAACACT
GCTACAGAATCGGAGACAGAGAATGAGAACACCAACCCGGCTGCTCTGAC
GCCTCTACAGTCGGGCGAGGCCAAGAACAACGCAGCTGCCGTTGGCGCCG
CCCTGCAGGACGGTGACTCCAACTTTGTTTCGAACGATTCCACCTCCCAG
GAGCCGATCATCGATGACAACGATGGCACCACACAGACAACGGCCACCAC
TTCCACAGAGGACGGTGAGCCCATCGCCCTAGACATTGGCATTGGCATCG
GTTCGAGTGGAACACCGCTCGCCTCGGACTCTGAAAGCAATCAGGAGGCG
CCGCCCAAGACCAACAGCCTGCCCATCCTGACTCCCACACAGCACTCGAG
CCAGAATCAGAATCAAAAGCAGTCGCCGAGCCAGCCCCACAAAACTAACA
ATTCGATCACCAACAACGGTCAGCCTGCTCCTTTGGCAGAAGAGGAAGCG
GTTACAGCAGCACCACAGCCAGCCAGCAAAGCGACTGCAGCACCAGCCAA
TGGAAATGGTAACGGGAACGGCGTCCTGGGCGACGAGGATGAGGATGAGG
CGGAGGACGAGGAGGAAGATGAGCTGGACGAGGAGGAGGATAATGAGGCG
GAGCTAGAGGCTGACGAGAGCAATAGCAGCAACGGCATTGTGAGGGACAG
TAAACTGCAGCAGCTGGCGGCGAACAAGGCGGTGGATGCGGTTTCACCGG
TAGCAGCGGGTGCAGACTCGGCACCAGCCATTGGACAGAAGCGTACTGCC
CTGCACTGCGATATGGAGCTGAAGAACGCCGGCGGAGTGGGTGTGGGCGT
GGGGGAGAAGTCACCGGATCTAAAGAAACTGCGCAGCGAATGAGGCGGAG
GTGAGGAAACGAAATACGGATACGGATGCGGATGCGGGTCAGAAACGGGG
ATCGGTTCGGCTCGGCACGTTTCGGTTCGCCGCGTATCCGGTGGAAAGAC
ATATGTATGTAGTGCAGTTGAGTCGACATAGAGACATAGAGCAACATTAC
CTACACTTTACCACAACAACATTCAAGAAATTCTACTATTAAGCAACTAA
CTATACATACATATAATATATTATATATATATATATATACACATATATAT
ATATATATATACAACATATAACGAGATGCGAACACCCAACACACTCCACT
CTCATACACACAACACAGACACACACAACCCGACATAACATGAACATAAC
CGATCAGATCAGAGCGGAATATAGGATCCCGATCCAGAAGGCAGTAAGCA
GCACCACAAACAACATTTCAATAGCATAGAAAGCGCGCCAAGATGAAGAA
TCAGAAGAATCCGATCAAGAATCCGAAGAACAAGCAGCAGAATCAGCAGC
AACAGAGAGTTCAGAATGCAGCGTTAACGTAATTTAACTAAAACGAAAAG
CAAATGCATACATGAATAGTAACTACAAAACAAGATCAGATGGAAATCGA
TATTTTTACACAGTCAAAAGGAACATTTAAATATAAAGAAATTTACAAAT
GCCGCAGTTGCCCACTACATACAAAAAACAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA

GH02702.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
Amun.ab 3785 Amun.ab 217..3286 1..3070 15215 99.7 Plus
Amun.w 4564 Amun.w 1261..3883 448..3070 12980 99.6 Plus
Amun.m 3867 Amun.m 564..3186 448..3070 12980 99.6 Plus
Amun.w 4564 Amun.w 728..1176 1..449 2245 100 Plus
Amun.m 3867 Amun.m 31..479 1..449 2245 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11602039..11603590 3029..1484 7635 99.6 Minus
chrX 22417052 chrX 11603989..11605028 1487..448 5185 99.9 Minus
chrX 22417052 chrX 11605779..11606227 449..1 2245 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:28:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11710783..11712369 3070..1484 7800 99.4 Minus
X 23542271 X 11712768..11713807 1487..448 5200 100 Minus
X 23542271 X 11714558..11715006 449..1 2245 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:16:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 11718881..11720467 3070..1484 7800 99.4 Minus
X 23527363 X 11720866..11721905 1487..448 5200 100 Minus
X 23527363 X 11722656..11723104 449..1 2245 100 Minus
Blast to na_te.dros performed 2019-03-17 00:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6916 2747..2945 134 58.8 Plus

GH02702.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:04:33 Download gff for GH02702.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11602045..11602462 2612..3023 98 == Minus
chrX 11602523..11602983 2091..2551 100 == Minus
chrX 11603040..11603587 1487..2034 100 <- Minus
chrX 11603990..11605026 450..1486 99 <- Minus
chrX 11605779..11605835 393..449 100 == Minus
chrX 11605937..11606227 1..291 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:08:33 Download gff for GH02702.complete
Subject Subject Range Query Range Percent Splice Strand
CG2446-RC 1..1653 691..2343 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:16:38 Download gff for GH02702.complete
Subject Subject Range Query Range Percent Splice Strand
Amun-RC 1..1653 691..2343 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:56:02 Download gff for GH02702.complete
Subject Subject Range Query Range Percent Splice Strand
Amun-RI 1..1653 691..2343 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:07:51 Download gff for GH02702.complete
Subject Subject Range Query Range Percent Splice Strand
CG2446-RC 1..1653 691..2343 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:08:37 Download gff for GH02702.complete
Subject Subject Range Query Range Percent Splice Strand
Amun-RL 1..1653 691..2343 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:40:39 Download gff for GH02702.complete
Subject Subject Range Query Range Percent Splice Strand
CG2446-RD 25..3016 1..2992 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:16:38 Download gff for GH02702.complete
Subject Subject Range Query Range Percent Splice Strand
Amun-RD 25..3053 1..3029 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:56:02 Download gff for GH02702.complete
Subject Subject Range Query Range Percent Splice Strand
Amun-RD 25..3053 1..3029 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:07:51 Download gff for GH02702.complete
Subject Subject Range Query Range Percent Splice Strand
CG2446-RD 25..3016 1..2992 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:37 Download gff for GH02702.complete
Subject Subject Range Query Range Percent Splice Strand
Amun-RD 25..3053 1..3029 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:04:33 Download gff for GH02702.complete
Subject Subject Range Query Range Percent Splice Strand
X 11710824..11712366 1487..3029 100 <- Minus
X 11712769..11713805 450..1486 100 <- Minus
X 11714558..11715006 1..449 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:04:33 Download gff for GH02702.complete
Subject Subject Range Query Range Percent Splice Strand
X 11710824..11712366 1487..3029 100 <- Minus
X 11712769..11713805 450..1486 100 <- Minus
X 11714558..11715006 1..449 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:04:33 Download gff for GH02702.complete
Subject Subject Range Query Range Percent Splice Strand
X 11710824..11712366 1487..3029 100 <- Minus
X 11712769..11713805 450..1486 100 <- Minus
X 11714558..11715006 1..449 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:56:02 Download gff for GH02702.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11604857..11606399 1487..3029 100 <- Minus
arm_X 11606802..11607838 450..1486 100 <- Minus
arm_X 11608591..11609039 1..449 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:39:40 Download gff for GH02702.complete
Subject Subject Range Query Range Percent Splice Strand
X 11718922..11720464 1487..3029 100 <- Minus
X 11720867..11721903 450..1486 100 <- Minus
X 11722656..11723104 1..449 100   Minus

GH02702.hyp Sequence

Translation from 690 to 2342

> GH02702.hyp
MSNGKATVSFFETGSTKQFEYCYQLYPQVLKLKAEKRCKKPQELIRLDQW
YQNELPKLIKARGKDAHMVYDELVQSMKWKQSRGKFYPQLSYLVKVNTPR
AVIQETKKAFRKLPNLEQAITALSNLKGVGTTMASALLAAAAPDSAPFMA
DECLMAIPEIEGIDYTTKEYLNFVNHIQATVERLNAEVGGDTPHWSPHRV
ELALWSHYVANDLSPEMLDDMPPPGSGASTGTGSLSTNGNSSKVLDGDDT
NDGVGVDLDDESQGAGGRNTATESETENENTNPAALTPLQSGEAKNNAAA
VGAALQDGDSNFVSNDSTSQEPIIDDNDGTTQTTATTSTEDGEPIALDIG
IGIGSSGTPLASDSESNQEAPPKTNSLPILTPTQHSSQNQNQKQSPSQPH
KTNNSITNNGQPAPLAEEEAVTAAPQPASKATAAPANGNGNGNGVLGDED
EDEAEDEEEDELDEEEDNEAELEADESNSSNGIVRDSKLQQLAANKAVDA
VSPVAAGADSAPAIGQKRTALHCDMELKNAGGVGVGVGEKSPDLKKLRSE
*

GH02702.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
Amun-PK 550 CG2446-PK 1..550 1..550 2836 100 Plus
Amun-PJ 550 CG2446-PJ 1..550 1..550 2836 100 Plus
Amun-PL 550 CG2446-PL 1..550 1..550 2836 100 Plus
Amun-PI 550 CG2446-PI 1..550 1..550 2836 100 Plus
Amun-PH 550 CG2446-PH 1..550 1..550 2836 100 Plus

GH02702.pep Sequence

Translation from 690 to 2342

> GH02702.pep
MSNGKATVSFFETGSTKQFEYCYQLYPQVLKLKAEKRCKKPQELIRLDQW
YQNELPKLIKARGKDAHMVYDELVQSMKWKQSRGKFYPQLSYLVKVNTPR
AVIQETKKAFRKLPNLEQAITALSNLKGVGTTMASALLAAAAPDSAPFMA
DECLMAIPEIEGIDYTTKEYLNFVNHIQATVERLNAEVGGDTPHWSPHRV
ELALWSHYVANDLSPEMLDDMPPPGSGASTGTGSLSTNGNSSKVLDGDDT
NDGVGVDLDDESQGAGGRNTATESETENENTNPAALTPLQSGEAKNNAAA
VGAALQDGDSNFVSNDSTSQEPIIDDNDGTTQTTATTSTEDGEPIALDIG
IGIGSSGTPLASDSESNQEAPPKTNSLPILTPTQHSSQNQNQKQSPSQPH
KTNNSITNNGQPAPLAEEEAVTAAPQPASKATAAPANGNGNGNGVLGDED
EDEAEDEEEDELDEEEDNEAELEADESNSSNGIVRDSKLQQLAANKAVDA
VSPVAAGADSAPAIGQKRTALHCDMELKNAGGVGVGVGEKSPDLKKLRSE
*

GH02702.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21437-PA 587 GF21437-PA 1..587 1..550 1712 70.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18840-PA 548 GG18840-PA 1..548 1..550 2344 94.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24559-PA 570 GH24559-PA 1..383 1..374 1507 76.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
Amun-PK 550 CG2446-PK 1..550 1..550 2836 100 Plus
Amun-PJ 550 CG2446-PJ 1..550 1..550 2836 100 Plus
Amun-PL 550 CG2446-PL 1..550 1..550 2836 100 Plus
Amun-PI 550 CG2446-PI 1..550 1..550 2836 100 Plus
Amun-PH 550 CG2446-PH 1..550 1..550 2836 100 Plus
Amun-PG 550 CG2446-PG 1..550 1..550 2836 100 Plus
Amun-PF 550 CG2446-PF 1..550 1..550 2836 100 Plus
Amun-PA 550 CG2446-PA 1..550 1..550 2836 100 Plus
Amun-PE 550 CG2446-PE 1..550 1..550 2836 100 Plus
Amun-PC 550 CG2446-PC 1..550 1..550 2836 100 Plus
Amun-PD 550 CG2446-PD 1..550 1..550 2836 100 Plus
Amun-PB 550 CG2446-PB 1..550 1..550 2836 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16319-PA 587 GI16319-PA 1..378 1..374 1525 78.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15233-PA 468 GL15233-PA 1..277 1..283 1349 89.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15368-PA 552 GA15368-PA 1..552 1..550 1839 74.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13052-PA 549 GM13052-PA 1..549 1..550 2840 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15978-PA 549 GD15978-PA 1..549 1..550 2840 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15659-PA 578 GJ15659-PA 1..388 1..374 1492 78.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19790-PA 568 GK19790-PA 1..416 1..411 1579 76.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17605-PA 550 GE17605-PA 1..550 1..550 2362 95.5 Plus