Clone GH02705 Report

Search the DGRC for GH02705

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:27
Well:5
Vector:pOT2
Associated Gene/Transcriptp130CAS-RB
Protein status:GH02705.pep: gold
Preliminary Size:2625
Sequenced Size:2709

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1212 2001-01-01 Release 2 assignment
CG1212 2001-09-19 Blastp of sequenced clone
CG1212 2003-01-01 Sim4 clustering to Release 3
p130CAS 2008-04-29 Release 5.5 accounting
p130CAS 2008-08-15 Release 5.9 accounting
p130CAS 2008-12-18 5.12 accounting

Clone Sequence Records

GH02705.complete Sequence

2709 bp (2709 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058273

> GH02705.complete
CGTCTTTCGGCGACAAGGTTTTCCAATTGGGAATTTTCAATTGTGCAGAC
CATTTTTGATAATAGTACATTTAAGCAAGATGTGAAAGCAAAAGAGACGG
AGGAAGGGCCCAAAATAGTGAGTGCCACACCCGATTGTATTCTACGACTG
CCTCTGTATTTTTTTTAAATTGCCACATGCATAGTAGAGGAAAATCAATA
AACCACTTAGCTGCAGGCAGTGTGTTGTGTAATCACACCACAGCGACACG
GTGATGTATACATCTACAATTACTCGCCAGGATCAGCGACTGGATCTGGA
GCAAGAGCCGCGCCCAGCACGCCGCAGCAGCAGATCTATAGCAACCAAAG
CATCTACCAGAACTTTGCAATGATGTCCAGTCCTCGCCAAAACGCAAGTG
GCAGCGAGTTTGAGACCTATGACATACCCAAGCCGGCCACGCCCGTTCCG
CTGAACTACGACAGTCCCAGAAGCGGTCTTCCGAAGGCTTCTAACTCTAC
AACGACCTCCAGCTCCAGCCTAGGCACCCGGTTTGAGACACTCAAGAGCG
TGGCCGCATCCATTGCGGAGGAGTCTTACGATGTGCCACGACCCCTGATC
TTAGGCAGCAACCAGCTCCAGCAGCAAATGTCACAGATGACGCCAAGCAG
TTCCGCCTCCTCACTGCTGACCAGCGACAGCCTCTCCCTGAGCTTTTCCA
GCTCGAACCGTTCATCGCTGGCCAACATGCCGGATTACGACATCCCTCGA
CGAAATCCGCTTCCTGTGCGCCGTCAACAAAGTGGGCTGACCTACGACTT
TCCGCTGCCTCCGTTGCAGGAGCAGGTTCCGCGGGTGCTGTGCACACCCT
CTACCGTCACCACTACCAAAGAACTGCCTCTAGAGCTCTCCTCCGCACTA
GAAACACTCGCAAAGCTGCAACTGCAGACTACTGCGGCCATTAATCGATT
GCTAAGTTTCGTAGTACCCAATTGGCGCACCCGCGCTCAACTCGAGCCGG
CCATCATGGATCTGAAGCTGGCCGCCCTGCGTCTGCGCACAACACTCCAC
GACCTGGCAGAGTTCGGGGAGGGAGCCCTGGGAAACGCCACGCGTTCGGA
GGACCGAAACCTGGCCCTCAAGCTGCGGCCCTTGGTGCGGGCTTTGCGAG
ATGCCAACAAGCTGATTCACGACTCTTCCGAATCCCTCGATGCCCAGGGA
GCCTGGTCTATAGATCAGCTGGCCAGAAGCGACGAGAAGCACGGCTGCCG
ACCCCCGGACGCACTGGACCAACTGATGGTTTGTGCCCAGACGCTCACTG
AGGACGTGCGCTCAACCACCAGTTTCATACAGGGCAACGCCTCGCTACTT
TTTAAGCGGCAGCTGACGGTGGGTCACAACGGAGGATCAGGAACGGGAGT
GTTAGAGGGCAGTCGGGGCAGCGCTGAATGGTTGGAGGACTACGACTATG
TGGCCTTTGAGTCCAAGGATGCAGCTGCCAGGAAAAACGAGGCGCTACGT
GAGGCTATTCCCGCCGACCTGAAAACGCAGTTCGATACGGTTATCCGGAC
TGCTGAGAGTTCAGCCATGGGCGCTGGGTCTGGATCAATTCCAACCACGC
CCACGGCACGCACGACACCTACTACGCCCTGCAAGTCGCCAGAGATGACC
GACAAAGACAAGAAGCTGGTGCGCTACTATGCCCAACAGATCTCTACTCA
TATGGGAAACTTGATGCAGGCCATTGATTCCTTCCTGGAGACAGTAGAAA
AGAACCAGCCGCCCAAGTTCTTCATTGCATACGGAAAGTTTGTGGTCGTG
AGCGCCCACAACTTGGTGACCATAGGCGACAACGTTTACCGAAATATTTC
GAAGGAGGCACTGCGGGAGAAAATCCTGCGCTGCACCAACGCCCTCTCCG
ATGCCCTAAAAACGTGCGTCTTGAAGTCAAAGAAGGCGGCAGCCCACTTC
CCCAGCGGTAGTGCAGTCCAGGAAATGGTCGATTCGGTGGTCCACATCAA
CAACCTAGCCCGGGACCTCAAGTCGGTCATGCTGCAGGCAGTTCATCTGT
CAACGGCGGCAGGAGTGGGTGCATGAATGGATTTCAGACAACCAGTATTA
GTTGAGAGGCGTGTAGCCAGGTCTTCCAGCATTGTCCGCGGTTTGGTAGA
TGTAGCACATGCATTGCATGTGTATCTGACATCGACATATCCTGGCATCA
GCAACCGAGCGCCAATTGCCGCTTATATTTTGCATTGTGATATTTTGAGC
AAAACATCTGAAAATGCACAGCACCACAGCCACAATCGCCCGATCGCCAT
CCCGGCCAGAACTCAGGTTCGGGCAAGCATAAGTTACGATATTGTACATA
GGACGATGTAAATTAGCGTATTCCCAAACCCCTGTCATGTCCGCTAGCAA
TATTGTATTAGTGAAGCATTTCAACATAGTTTTGTATACTTATATACTCT
ATACTCTAGAGCATAAACTTAGCCGTACCACCACATAAACATCTGCCTAA
GTTAAGCACGCATTATTATACTTGCATAGTCAGAATCTGAAAGATTTACC
CCCAACATTTTGAATAACGCGCCTTGGCGCTACTACAGTCAGCGATATAC
AAGCATATATATATAAATTGTAAACAACCAAGAAATTAGTATGTAATATG
AACAATAAACTAAAGACTTCGAATAAAATAACAATAAAAAAAAAAAAAAA
AAAAAAAAA

GH02705.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
p130CAS-RB 2698 p130CAS-RB 14..2698 1..2685 13425 100 Plus
p130CAS-RF 2631 p130CAS-RF 131..2631 185..2685 12505 100 Plus
p130CAS-RE 2708 p130CAS-RE 184..2643 229..2688 12300 100 Plus
p130CAS-RE 2708 p130CAS-RE 67..185 1..119 595 100 Plus
p130CAS-RF 2631 p130CAS-RF 14..130 1..117 585 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 172023..174479 229..2685 12285 100 Plus
chr3L 24539361 chr3L 171714..171943 1..230 1150 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:28:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 172061..174520 229..2688 12300 100 Plus
3L 28110227 3L 171752..171981 1..230 1150 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 172061..174520 229..2688 12300 100 Plus
3L 28103327 3L 171752..171981 1..230 1150 100 Plus
Blast to na_te.dros performed on 2019-03-16 14:14:25 has no hits.

GH02705.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:15:09 Download gff for GH02705.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 171714..171941 1..228 100 -> Plus
chr3L 172023..174479 229..2685 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:08:34 Download gff for GH02705.complete
Subject Subject Range Query Range Percent Splice Strand
p130CAS-RD 649..2496 229..2076 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:10:14 Download gff for GH02705.complete
Subject Subject Range Query Range Percent Splice Strand
p130CAS-RD 649..2496 229..2076 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:25:30 Download gff for GH02705.complete
Subject Subject Range Query Range Percent Splice Strand
p130CAS-RG 535..2382 229..2076 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:41:05 Download gff for GH02705.complete
Subject Subject Range Query Range Percent Splice Strand
p130CAS-RD 649..2496 229..2076 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:29:34 Download gff for GH02705.complete
Subject Subject Range Query Range Percent Splice Strand
p130CAS-RG 535..2382 229..2076 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:01:18 Download gff for GH02705.complete
Subject Subject Range Query Range Percent Splice Strand
p130CAS-RB 14..2698 1..2685 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:10:14 Download gff for GH02705.complete
Subject Subject Range Query Range Percent Splice Strand
p130CAS-RB 14..2698 1..2685 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:30 Download gff for GH02705.complete
Subject Subject Range Query Range Percent Splice Strand
p130CAS-RB 12..2696 1..2685 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:41:05 Download gff for GH02705.complete
Subject Subject Range Query Range Percent Splice Strand
p130CAS-RB 14..2698 1..2685 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:34 Download gff for GH02705.complete
Subject Subject Range Query Range Percent Splice Strand
p130CAS-RB 12..2696 1..2685 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:15:09 Download gff for GH02705.complete
Subject Subject Range Query Range Percent Splice Strand
3L 171752..171979 1..228 100 -> Plus
3L 172061..174517 229..2685 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:15:09 Download gff for GH02705.complete
Subject Subject Range Query Range Percent Splice Strand
3L 171752..171979 1..228 100 -> Plus
3L 172061..174517 229..2685 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:15:09 Download gff for GH02705.complete
Subject Subject Range Query Range Percent Splice Strand
3L 171752..171979 1..228 100 -> Plus
3L 172061..174517 229..2685 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:30 Download gff for GH02705.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 171752..171979 1..228 100 -> Plus
arm_3L 172061..174517 229..2685 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:18:42 Download gff for GH02705.complete
Subject Subject Range Query Range Percent Splice Strand
3L 171752..171979 1..228 100 -> Plus
3L 172061..174517 229..2685 100   Plus

GH02705.pep Sequence

Translation from 369 to 2075

> GH02705.pep
MMSSPRQNASGSEFETYDIPKPATPVPLNYDSPRSGLPKASNSTTTSSSS
LGTRFETLKSVAASIAEESYDVPRPLILGSNQLQQQMSQMTPSSSASSLL
TSDSLSLSFSSSNRSSLANMPDYDIPRRNPLPVRRQQSGLTYDFPLPPLQ
EQVPRVLCTPSTVTTTKELPLELSSALETLAKLQLQTTAAINRLLSFVVP
NWRTRAQLEPAIMDLKLAALRLRTTLHDLAEFGEGALGNATRSEDRNLAL
KLRPLVRALRDANKLIHDSSESLDAQGAWSIDQLARSDEKHGCRPPDALD
QLMVCAQTLTEDVRSTTSFIQGNASLLFKRQLTVGHNGGSGTGVLEGSRG
SAEWLEDYDYVAFESKDAAARKNEALREAIPADLKTQFDTVIRTAESSAM
GAGSGSIPTTPTARTTPTTPCKSPEMTDKDKKLVRYYAQQISTHMGNLMQ
AIDSFLETVEKNQPPKFFIAYGKFVVVSAHNLVTIGDNVYRNISKEALRE
KILRCTNALSDALKTCVLKSKKAAAHFPSGSAVQEMVDSVVHINNLARDL
KSVMLQAVHLSTAAGVGA*

GH02705.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24884-PA 778 GF24884-PA 215..778 2..568 2105 77.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14695-PA 793 GG14695-PA 226..793 1..568 2618 95.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15480-PA 808 GH15480-PA 225..808 1..568 1918 72.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
p130CAS-PF 568 CG1212-PF 1..568 1..568 2858 100 Plus
p130CAS-PD 831 CG1212-PD 264..831 1..568 2858 100 Plus
p130CAS-PG 793 CG1212-PG 226..793 1..568 2858 100 Plus
p130CAS-PB 568 CG1212-PB 1..568 1..568 2858 100 Plus
p130CAS-PE 567 CG1212-PE 1..567 2..568 2853 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16757-PA 783 GI16757-PA 225..782 1..565 1951 74 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16149-PA 869 GL16149-PA 295..869 1..568 2203 80.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11414-PA 805 GA11414-PA 231..805 1..568 2216 80.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14311-PA 804 GM14311-PA 237..804 1..568 2945 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13548-PA 804 GD13548-PA 237..804 1..568 2934 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12501-PA 792 GJ12501-PA 222..792 1..568 2024 76.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21042-PA 812 GK21042-PA 220..790 1..562 2113 77.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21057-PA 790 GE21057-PA 224..790 1..568 2610 95.4 Plus

GH02705.hyp Sequence

Translation from 369 to 2075

> GH02705.hyp
MMSSPRQNASGSEFETYDIPKPATPVPLNYDSPRSGLPKASNSTTTSSSS
LGTRFETLKSVAASIAEESYDVPRPLILGSNQLQQQMSQMTPSSSASSLL
TSDSLSLSFSSSNRSSLANMPDYDIPRRNPLPVRRQQSGLTYDFPLPPLQ
EQVPRVLCTPSTVTTTKELPLELSSALETLAKLQLQTTAAINRLLSFVVP
NWRTRAQLEPAIMDLKLAALRLRTTLHDLAEFGEGALGNATRSEDRNLAL
KLRPLVRALRDANKLIHDSSESLDAQGAWSIDQLARSDEKHGCRPPDALD
QLMVCAQTLTEDVRSTTSFIQGNASLLFKRQLTVGHNGGSGTGVLEGSRG
SAEWLEDYDYVAFESKDAAARKNEALREAIPADLKTQFDTVIRTAESSAM
GAGSGSIPTTPTARTTPTTPCKSPEMTDKDKKLVRYYAQQISTHMGNLMQ
AIDSFLETVEKNQPPKFFIAYGKFVVVSAHNLVTIGDNVYRNISKEALRE
KILRCTNALSDALKTCVLKSKKAAAHFPSGSAVQEMVDSVVHINNLARDL
KSVMLQAVHLSTAAGVGA*

GH02705.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
p130CAS-PF 568 CG1212-PF 1..568 1..568 2858 100 Plus
p130CAS-PD 831 CG1212-PD 264..831 1..568 2858 100 Plus
p130CAS-PG 793 CG1212-PG 226..793 1..568 2858 100 Plus
p130CAS-PB 568 CG1212-PB 1..568 1..568 2858 100 Plus
p130CAS-PE 567 CG1212-PE 1..567 2..568 2853 100 Plus