Clone GH02722 Report

Search the DGRC for GH02722

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:27
Well:22
Vector:pOT2
Associated Gene/TranscriptCG12123-RA
Protein status:GH02722.pep: gold
Preliminary Size:1209
Sequenced Size:1081

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12123 2001-01-01 Release 2 assignment
CG12123 2001-11-09 Blastp of sequenced clone
CG12123 2003-01-01 Sim4 clustering to Release 3
CG12123 2008-04-29 Release 5.5 accounting
CG12123 2008-08-15 Release 5.9 accounting
CG12123 2008-12-18 5.12 accounting

Clone Sequence Records

GH02722.complete Sequence

1081 bp (1081 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069038

> GH02722.complete
CGGTGGCCACACTTTTGTTATTAACATTTCTGTTCAACAAAAACATTAAT
AAACATTAGTAAAAGTGCAATTGTTAGTGCAATAAAGACAGTTCATATAC
AGAAACGTAGTCGAGAGCAGCTGGTGACCTCCACCGGTGACATAGTAGCC
TGTGCAATTTAACTAATAAGATTAGGATTTACTTAGTATCTTTTTTTTTT
AAATTTAACGCTTCCGATGTCGGATTCGCTGATCATTTGCGTTTCCGACT
ACTGGCGGCGATGTCATTACCACAATCGTCAAAATCGTGAAGCCGGCGAC
GCCTGGCCAGAAGCCAAACCGCTGCGGAGGCTGTGCATCGATGTGGACGC
CATCAATGGTAATTACTATCTTCGCGAGTTCCTGCACCAGCACGTGCTTG
CCCAGAGCCTTATGCACAATCATGGTGTCCAGCTGGTCTGGCTGCAATTC
GAGGAACCGGAGAAGCACACCATTGACTACAAATTCGCCGACATGCTGGC
ACACACGCTGTGGGAGCGCATCGAGGTGGAGCACCTCATGTCCTGGCTGT
CCACACTGGGCGGCGGATTCTCCGCCCTTGGCGAGCAGTTCGAGCGATGT
GCGAAAACGGCTGGCAAGATTTCGCTGCAGCAGTTAAAGATTGGCATGCG
ACTCGGTGATCCCTTCCTGCAGACGCGCTGCAAGCTCTACTACAGCATTT
CGCTAATCCAGCGTGGTCAACTACGGATGGCGAAGCATTTGATCCGACAG
CAGTATAAGTTTGCGAGTAGAAACATCGAGAAGGATGTGCGCCTGATGCG
GATGTGTCTGGGCATTTGGCGGCGACTTAGCTACGAGTACGAGCAGCGAA
GACTGCGGAAAGGTGGCAACTAAGTTGGACTTGGAACCGCAGATTATTTC
GATCAAAAAACTAAAAATTGTAAATTGCATTAGGTGGTCACGATTCGAGC
GTCGATCGTGTTTTTTTTCCTCTTTTGTTAAGCAAAAGTCAAATATAGTT
TTCAATTTATTTATTTAATATGTAATTGTATATACGTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH02722.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG12123-RA 1050 CG12123-RA 14..1050 1..1037 5185 100 Plus
CG1440.a 2281 CG1440.a 2244..2281 1043..1006 190 100 Minus
CG1440-RC 2382 CG1440-RC 2345..2382 1043..1006 190 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8333488..8334088 601..1 2975 99.7 Minus
chrX 22417052 chrX 8332993..8333430 1037..601 2125 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:28:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8441741..8442341 601..1 3005 100 Minus
X 23542271 X 8441241..8441683 1043..601 2215 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8449839..8450439 601..1 3005 100 Minus
X 23527363 X 8449339..8449781 1043..601 2215 100 Minus
Blast to na_te.dros performed 2019-03-17 00:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 207..259 984..1034 116 71.7 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 969..1049 1032..955 109 63 Minus

GH02722.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:04:54 Download gff for GH02722.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8332993..8333430 601..1037 99 <- Minus
chrX 8333489..8334088 1..600 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:08:41 Download gff for GH02722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 1..657 217..873 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:34:03 Download gff for GH02722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 1..657 217..873 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:56:37 Download gff for GH02722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 1..657 217..873 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:01:36 Download gff for GH02722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 1..657 217..873 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:09:16 Download gff for GH02722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 1..657 217..873 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:13:23 Download gff for GH02722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 1..1037 1..1037 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:34:03 Download gff for GH02722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 1..1037 1..1037 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:56:37 Download gff for GH02722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 8..1044 1..1037 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:01:37 Download gff for GH02722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 1..1037 1..1037 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:16 Download gff for GH02722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12123-RA 8..1044 1..1037 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:04:54 Download gff for GH02722.complete
Subject Subject Range Query Range Percent Splice Strand
X 8441247..8441683 601..1037 100 <- Minus
X 8441742..8442341 1..600 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:04:54 Download gff for GH02722.complete
Subject Subject Range Query Range Percent Splice Strand
X 8441247..8441683 601..1037 100 <- Minus
X 8441742..8442341 1..600 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:04:54 Download gff for GH02722.complete
Subject Subject Range Query Range Percent Splice Strand
X 8441247..8441683 601..1037 100 <- Minus
X 8441742..8442341 1..600 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:56:37 Download gff for GH02722.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8335280..8335716 601..1037 100 <- Minus
arm_X 8335775..8336374 1..600 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:38:32 Download gff for GH02722.complete
Subject Subject Range Query Range Percent Splice Strand
X 8449345..8449781 601..1037 100 <- Minus
X 8449840..8450439 1..600 100   Minus

GH02722.hyp Sequence

Translation from 216 to 872

> GH02722.hyp
MSDSLIICVSDYWRRCHYHNRQNREAGDAWPEAKPLRRLCIDVDAINGNY
YLREFLHQHVLAQSLMHNHGVQLVWLQFEEPEKHTIDYKFADMLAHTLWE
RIEVEHLMSWLSTLGGGFSALGEQFERCAKTAGKISLQQLKIGMRLGDPF
LQTRCKLYYSISLIQRGQLRMAKHLIRQQYKFASRNIEKDVRLMRMCLGI
WRRLSYEYEQRRLRKGGN*

GH02722.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12123-PA 218 CG12123-PA 1..218 1..218 1174 100 Plus

GH02722.pep Sequence

Translation from 216 to 872

> GH02722.pep
MSDSLIICVSDYWRRCHYHNRQNREAGDAWPEAKPLRRLCIDVDAINGNY
YLREFLHQHVLAQSLMHNHGVQLVWLQFEEPEKHTIDYKFADMLAHTLWE
RIEVEHLMSWLSTLGGGFSALGEQFERCAKTAGKISLQQLKIGMRLGDPF
LQTRCKLYYSISLIQRGQLRMAKHLIRQQYKFASRNIEKDVRLMRMCLGI
WRRLSYEYEQRRLRKGGN*

GH02722.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22585-PA 220 GF22585-PA 1..215 1..215 863 76.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19052-PA 218 GG19052-PA 1..218 1..218 994 86.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12506-PA 217 GH12506-PA 2..215 4..215 716 65.4 Plus
Dgri\GH11788-PA 228 GH11788-PA 3..221 5..215 630 56.6 Plus
Dgri\GH16878-PA 228 GH16878-PA 3..221 5..215 621 56.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12123-PA 218 CG12123-PA 1..218 1..218 1174 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14859-PA 224 GI14859-PA 2..217 4..215 760 67.1 Plus
Dmoj\GI12021-PA 232 GI12021-PA 2..219 4..212 679 60.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20249-PA 242 GL20249-PA 1..226 1..214 791 69.5 Plus
Dper\GL19744-PA 226 GL19744-PA 1..213 1..214 716 65.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26966-PA 242 GA26966-PA 1..226 1..214 798 69 Plus
Dpse\GA28923-PA 226 GA28923-PA 1..213 1..214 720 66.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21366-PA 218 GM21366-PA 1..218 1..218 1086 92.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16118-PA 218 GD16118-PA 1..218 1..218 1081 91.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19522-PA 223 GJ19522-PA 2..216 4..215 742 68.4 Plus
Dvir\GJ13291-PA 228 GJ13291-PA 3..222 5..215 642 60.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19894-PA 229 GK19894-PA 1..219 5..211 692 61.5 Plus
Dwil\GK24491-PA 247 GK24491-PA 1..216 5..211 656 57.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17456-PA 218 GE17456-PA 1..218 1..218 1002 85.8 Plus