Clone GH02741 Report

Search the DGRC for GH02741

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:27
Well:41
Vector:pOT2
Associated Gene/TranscriptCG42379-RA
Protein status:GH02741.pep3: gold GH02741.pep4: gold GH02741.pep2: gold GH02741.pep: gold
Preliminary Size:2180
Sequenced Size:2260

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9865 2001-01-01 Release 2 assignment
CG9865 2001-07-04 Blastp of sequenced clone
CG9865 2003-01-01 Sim4 clustering to Release 3
CG9865 2008-04-29 Release 5.5 accounting
CG9865 2008-08-15 Release 5.9 accounting
CG42380 2008-12-18 5.12 accounting
CG9865 2008-12-18 5.12 accounting
CG42379 2008-12-18 5.12 accounting
CG42381 2008-12-18 5.12 accounting

Clone Sequence Records

GH02741.complete Sequence

2260 bp (2260 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047519.1

> GH02741.complete
AGAGTGCAGAACACTTCCAAGTACTTTTCACATATTGCAAGAGCGATTTA
ATATCGTAAGAATTCTGGGCAGGATTACATGTCTGACACTCGCAAGGATC
CCTGCAAACCGAACGCCTGCCGCATACAAGCCTGTCTGACCAAGAATCAC
TACCAGGAGGACAAGTGCTTGGATGTCCTTGAGGCAATGCGCCAGTGCTG
TTTAAAGTGGCACAAGGAATCGCTTTGCTGCAGTGGAATCGATTTGGAGA
AGACTTATCTACCAGACGCATCCAAGGAAAAGAACGCAACCGGCAAGTCG
AACAAATAATGTCCATACCGCAGTATAGGCCTCCGAAGGAAATTCAAGAC
TTGCTGGACCAAAAGGAGCAACAGCAAGCAAATCAGCGCAGGCGAACCGC
TGTGCTACCCAAACGCACGTGGATTCAGCGAAATCCACGCCTGTTCCAGA
TCTCCTTCATCACAGGCTCACTTCTGATCTTCTTCTCCAAGCCCCTGTTT
GACTGCTTTATCGCCGATCCCCTACCACCGCCGGAGAACAAAGTTCCGCC
TCACAAGCGCTAAGCTAAGGCATGGAATCGGTGCGCAAAGCCAACCAAAG
AATCCGCAACTATCCAGTTCTGCTAAGCAAGTGCGCGGACAAAGCCACTG
CGTATGCGGTTTGCGTGTCGCGTGATCTAAACGTGCAGCACAAAATCTGC
GACACCGAGTTCAAGGAGTTCCTAAGCTGTATCCGCAAGACCGCTTTGGA
AATGAAGACCAAGCTTTAGACAAACGTAAACAATAAACACGATGACTCAA
ACAAAGGCTGCGACCACTGGATGGCAGCGACTGGGTCGCCGCATCCTTTA
CACTAGCTTTCGGACCCATCTACTAATATCCGCCCTGCTGCGAATAGCTT
TAATTTGCTACGGACAATTACACGACAGTCAGTCCGCCGTGCCCTACACC
GATATAGACTACAAGGTGGTGACTGATGGAGCCCGTCAAGTTCTGGCTGG
GGACACACCCTTCGCCAGGCATACTTACCGATATAGCCCAATCATGGCAT
ATCTGCAGACTTTTAACATCCTGCTTCATCCGGCGTGGGGTAAACTACTG
TATGCGACATTCGATCTTCTCATCGCCACACTTATTTACCGTCTGGTGCA
CATGGAAATCAAGAGTCAGTACCAGAAGACCGTACAACACCTGCTTAGCA
AGTTCAACAGGCCACGGGACTCGGACCAATCGCTGGATGCCCTGGATGAG
CGAAGTCATCCAGAGAACTTGGCCCGCGCCTCTGCTTGCTTTTGGTTATA
CAACCCGCTGACGGCTGTAATATCCACACGTGGAAGCGGCGATTGCTTCT
CAAGCTTCTTCGTGATACTAACTATATACCTGCTGTTAAAATCTGAGCAC
AATGTCACCAGGAGTTACTGGCTTATATTCGGAGCGGGCTTGGCTCACGG
TCTAGTGATACACCTCCGTCTGTATCCGTTGCTATTCAGTTTGGCATACT
ATTTATCGCTATCAACGCGGCTGACACAAACTCCCCTCGACTTCCTGTGC
CAAATCCTGCGGCCCAACAAGCAACAACTGTGCCTGATAAGTGGAACATT
GATCAGCCTAGTGGCCTTCACTTGGACCTTCTACACAATGTACGGTTGGG
AATATATATATGAAGCGTACCTGTACCACTTCGTACGCAAGGACCCGCGA
CACAACTTCTCGCTGCAGTTCCTTCTACAGTACCTGGGCAGTGCGTCGAG
TGTGGCGGAACCTTCTGCGATCCTGAAGACTCTAGTGCTGGCTCCGCAGT
TCCTGCTCATCCTCTACTTAAGCTTGAGCTTCGGTCAGTTCCGCCAGACG
CTGCCATTCTGCATCTTTGCCGTGGCCTTTGTCATCGTCACCTATAACTC
GGTGGTAACCTCTCAGTACTTCATTTGGTACTTGGCCATTCTGCCGCTCT
GTTTGAACAACTTCAAGATGCTGTCGTGGAGAAGGTGCTTCGGTCTCCTG
TTCCTCTGGCTGCTTGCCCAGGCGCTGTGGTTGCTGCCGGCCTATTTGCT
GGAGTTCCACACATGGAACACCTTCTACTGGATTGGACTGCAAGGAGCCG
TATTCTTCGCCACCAACGGATACATTTTGGAGCAGCTGTTGAGTCATTAC
GGGTTCACACAATTTAAGATAAGCTACAGAAAGTTACTGTAATCAAACAA
TCCGCAAAGCAGAGATTTAATATAAAAAATAAACACAAGAAAAAAAAAAA
AAAAAAAAAA

GH02741.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9865-RA 2398 CG9865-RA 160..2398 1..2239 11195 100 Plus
CG42379-RA 2398 CG42379-RA 160..2398 1..2239 11195 100 Plus
CG42381-RA 2398 CG42381-RA 160..2398 1..2239 11195 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17553991..17555930 2239..300 9640 99.8 Minus
chr2R 21145070 chr2R 17555986..17556143 300..143 790 100 Minus
chr2R 21145070 chr2R 17556205..17556346 142..1 710 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:28:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21667540..21669480 2240..300 9705 100 Minus
2R 25286936 2R 21669536..21669693 300..143 790 100 Minus
2R 25286936 2R 21669755..21669896 142..1 710 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21668739..21670679 2240..300 9705 100 Minus
2R 25260384 2R 21670735..21670892 300..143 790 100 Minus
2R 25260384 2R 21670954..21671095 142..1 710 100 Minus
Blast to na_te.dros performed on 2019-03-16 18:03:17 has no hits.

GH02741.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:04:24 Download gff for GH02741.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17553991..17555930 300..2239 99 <- Minus
chr2R 17555987..17556143 143..299 100 <- Minus
chr2R 17556205..17556346 1..142 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:08:43 Download gff for GH02741.complete
Subject Subject Range Query Range Percent Splice Strand
CG9865-RB 1..1401 792..2192 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:30:10 Download gff for GH02741.complete
Subject Subject Range Query Range Percent Splice Strand
CG9865-RB 1..1401 792..2192 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:08:05 Download gff for GH02741.complete
Subject Subject Range Query Range Percent Splice Strand
CG9865-RA 1..1401 792..2192 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:03:39 Download gff for GH02741.complete
Subject Subject Range Query Range Percent Splice Strand
CG9865-RB 1..1401 792..2192 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:28:27 Download gff for GH02741.complete
Subject Subject Range Query Range Percent Splice Strand
CG9865-RA 1..1401 792..2192 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:30:53 Download gff for GH02741.complete
Subject Subject Range Query Range Percent Splice Strand
CG42380-RA 160..2398 1..2239 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:30:10 Download gff for GH02741.complete
Subject Subject Range Query Range Percent Splice Strand
CG9865-RA 160..2398 1..2239 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:08:05 Download gff for GH02741.complete
Subject Subject Range Query Range Percent Splice Strand
CG42379-RA 21..2259 1..2239 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:03:39 Download gff for GH02741.complete
Subject Subject Range Query Range Percent Splice Strand
CG9865-RA 160..2398 1..2239 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:28:27 Download gff for GH02741.complete
Subject Subject Range Query Range Percent Splice Strand
CG42379-RA 21..2259 1..2239 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:04:24 Download gff for GH02741.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21669755..21669896 1..142 100   Minus
2R 21667541..21669480 300..2239 100 <- Minus
2R 21669537..21669693 143..299 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:04:24 Download gff for GH02741.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21669755..21669896 1..142 100   Minus
2R 21667541..21669480 300..2239 100 <- Minus
2R 21669537..21669693 143..299 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:04:24 Download gff for GH02741.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21669755..21669896 1..142 100   Minus
2R 21667541..21669480 300..2239 100 <- Minus
2R 21669537..21669693 143..299 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:08:05 Download gff for GH02741.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17555046..17556985 300..2239 100 <- Minus
arm_2R 17557042..17557198 143..299 100 <- Minus
arm_2R 17557260..17557401 1..142 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:41:44 Download gff for GH02741.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21668740..21670679 300..2239 100 <- Minus
2R 21670736..21670892 143..299 100 <- Minus
2R 21670954..21671095 1..142 100   Minus

GH02741.pep4 Sequence

Translation from 78 to 308

> GH02741.pep4
MSDTRKDPCKPNACRIQACLTKNHYQEDKCLDVLEAMRQCCLKWHKESLC
CSGIDLEKTYLPDASKEKNATGKSNK*

GH02741.pep4 Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20754-PA 74 GG20754-PA 1..74 1..74 359 93.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG42381-PA 76 CG42381-PA 1..76 1..76 426 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15697-PA 151 GM15697-PA 1..74 1..74 386 97.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25176-PA 151 GD25176-PA 1..74 1..74 381 95.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13686-PA 151 GE13686-PA 1..74 1..74 378 95.9 Plus

GH02741.pep2 Sequence

Translation from 308 to 562

> GH02741.pep2
MSIPQYRPPKEIQDLLDQKEQQQANQRRRTAVLPKRTWIQRNPRLFQISF
ITGSLLIFFSKPLFDCFIADPLPPPENKVPPHKR*

GH02741.pep2 Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11628-PA 84 GF11628-PA 1..84 1..84 392 88.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20755-PA 84 GG20755-PA 1..84 1..84 406 92.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23153-PA 85 GH23153-PA 5..85 2..84 292 69.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG42379-PB 84 CG42379-PB 1..84 1..84 449 100 Plus
CG42379-PA 84 CG42379-PA 1..84 1..84 449 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11272-PA 88 GL11272-PA 1..88 1..84 315 75 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24664-PA 88 GA24664-PA 1..88 1..84 315 75 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15697-PA 151 GM15697-PA 75..151 8..84 390 96.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25176-PA 151 GD25176-PA 75..151 8..84 386 94.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:18:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13686-PA 151 GE13686-PA 75..151 8..84 385 93.5 Plus

GH02741.pep3 Sequence

Translation from 571 to 768

> GH02741.pep3
MESVRKANQRIRNYPVLLSKCADKATAYAVCVSRDLNVQHKICDTEFKEF
LSCIRKTALEMKTKL*

GH02741.pep3 Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11629-PA 65 GF11629-PA 1..65 1..65 299 84.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG42380-PB 65 CG42380-PB 1..65 1..65 334 100 Plus
CG42380-PA 65 CG42380-PA 1..65 1..65 334 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15698-PA 65 GM15698-PA 1..65 1..65 338 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25177-PA 65 GD25177-PA 1..65 1..65 338 100 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13687-PA 65 GE13687-PA 1..65 1..65 337 98.5 Plus

GH02741.hyp Sequence

Translation from 791 to 2191

> GH02741.hyp
MTQTKAATTGWQRLGRRILYTSFRTHLLISALLRIALICYGQLHDSQSAV
PYTDIDYKVVTDGARQVLAGDTPFARHTYRYSPIMAYLQTFNILLHPAWG
KLLYATFDLLIATLIYRLVHMEIKSQYQKTVQHLLSKFNRPRDSDQSLDA
LDERSHPENLARASACFWLYNPLTAVISTRGSGDCFSSFFVILTIYLLLK
SEHNVTRSYWLIFGAGLAHGLVIHLRLYPLLFSLAYYLSLSTRLTQTPLD
FLCQILRPNKQQLCLISGTLISLVAFTWTFYTMYGWEYIYEAYLYHFVRK
DPRHNFSLQFLLQYLGSASSVAEPSAILKTLVLAPQFLLILYLSLSFGQF
RQTLPFCIFAVAFVIVTYNSVVTSQYFIWYLAILPLCLNNFKMLSWRRCF
GLLFLWLLAQALWLLPAYLLEFHTWNTFYWIGLQGAVFFATNGYILEQLL
SHYGFTQFKISYRKLL*

GH02741.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9865-PB 466 CG9865-PB 1..466 1..466 2452 100 Plus
CG9865-PA 466 CG9865-PA 1..466 1..466 2452 100 Plus

GH02741.pep Sequence

Translation from 791 to 2191

> GH02741.pep
MTQTKAATTGWQRLGRRILYTSFRTHLLISALLRIALICYGQLHDSQSAV
PYTDIDYKVVTDGARQVLAGDTPFARHTYRYSPIMAYLQTFNILLHPAWG
KLLYATFDLLIATLIYRLVHMEIKSQYQKTVQHLLSKFNRPRDSDQSLDA
LDERSHPENLARASACFWLYNPLTAVISTRGSGDCFSSFFVILTIYLLLK
SEHNVTRSYWLIFGAGLAHGLVIHLRLYPLLFSLAYYLSLSTRLTQTPLD
FLCQILRPNKQQLCLISGTLISLVAFTWTFYTMYGWEYIYEAYLYHFVRK
DPRHNFSLQFLLQYLGSASSVAEPSAILKTLVLAPQFLLILYLSLSFGQF
RQTLPFCIFAVAFVIVTYNSVVTSQYFIWYLAILPLCLNNFKMLSWRRCF
GLLFLWLLAQALWLLPAYLLEFHTWNTFYWIGLQGAVFFATNGYILEQLL
SHYGFTQFKISYRKLL*

GH02741.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11630-PA 468 GF11630-PA 1..468 1..466 1967 84.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20756-PA 466 GG20756-PA 1..466 1..466 2403 97.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23154-PA 439 GH23154-PA 8..439 11..464 1352 59.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-M-PB 466 CG9865-PB 1..466 1..466 2452 100 Plus
PIG-M-PA 466 CG9865-PA 1..466 1..466 2452 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16970-PA 448 GI16970-PA 1..446 1..453 1323 58.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11273-PA 466 GL11273-PA 1..466 1..466 2061 85.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22083-PA 466 GA22083-PA 1..466 1..466 2052 85.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15700-PA 466 GM15700-PA 1..466 1..466 2415 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25178-PA 466 GD25178-PA 1..466 1..466 2420 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19683-PA 470 GJ19683-PA 15..470 8..466 1420 62.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19008-PA 464 GK19008-PA 18..462 18..464 1652 69.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13688-PA 466 GE13688-PA 1..466 1..466 2388 97.2 Plus