Clone GH02816 Report

Search the DGRC for GH02816

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:28
Well:16
Vector:pOT2
Associated Gene/TranscriptCG5707-RA
Protein status:GH02816.pep: gold
Preliminary Size:1300
Sequenced Size:1482

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5707 2001-01-01 Release 2 assignment
CG5707 2001-09-19 Blastp of sequenced clone
CG5707 2003-01-01 Sim4 clustering to Release 3
CG5707 2008-04-29 Release 5.5 accounting
CG5707 2008-08-15 Release 5.9 accounting
CG5707 2008-12-18 5.12 accounting

Clone Sequence Records

GH02816.complete Sequence

1482 bp (1482 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058274

> GH02816.complete
CGGGCACTTCTCTTCGGCTCGATCTCGCTAGTGTTCAACTAATTTAGTTA
GTGCAGTATAAAAATAGAAAAGTTTCCCACAACACCTTGCGTATATATTT
TCCGACACGGCGTGTGTCGGAATTAGTTGGGATTTAGATTGTATTATTCA
CCGAGATTGCCAACTAAAATGACATCGAATTCCGAAGGTCGAGGCAACCC
CATCGAGACGCATGAACAGGAGCCCATGGACGTGCGCATCGACATGCCGT
GGGGTTATGTGGTGGGCAAGTGGTACGGCAATCGGCAGGTACGACCCATC
CTGGCGCTGCATGGCTGGCTGGACAACCTGGGCACGTGGGACAAATTGCT
GCCCCTGCTACCGAAGCACCTGGGAGTGCTGTGCATCGACCTGCCCGGCC
ACGGATACTCCTCGAAGCTGCCCGAGGGGATTGCCTACCACTTCGTGGAC
TACCTGTGCGTGATCCTGCGCGTAATGGAGGAGTACCGCTGGCAGAAGGT
GTCCCTGATGGCCCACTCAATGAGCGCCATGCTGTGCTTCGTATTCGCTT
CGCTGTACCCACATCGCACCGACATGTTGGTCAGCATAGATATAGTGAAG
ACCCGCTATAGGAAGCCCCCCTCGCAGATCGACTATCTGCGCAAGAACAT
CGAGGGCTACATTGTGGAGGACGAGCGATTTGCGAATTCCAAGCGCCAGG
AGCCGCCGGCCTATACCTACACAGAGATGGAGCAGGTCCTGTACAAAGGC
ACCGACTACTCGGTGGAGCTGGAGAACTGCCGCCACATCCTGGAGCGCAA
CATCAGCCGTTCCACCAAGTTCCCGGCCAAGTTCTTCTTCTCGCGCGACG
GTCGCTGCAAGTACTACACGGAGTTCCATACGAGTCCTCCCTTCGCCGCT
GAACTGGCCAGGACCATCAAGAATGTGCCCTACTGCGTGATCAAGGGCTC
CGAGTCGAACTACATAGACGAGCAGAGCGACGAGGTGATTGGCATCCTCA
GGGAGAACAACCCGCACTTCGAGCTCCACGAAGTGCAGGGCACCCACCAC
GTTCACCTCAACAATGCGCAGGGTGTGGCGGCCGTCATTAATCCCTTCAT
TCTGCACCACCGCCCACCGCATCTGGAGAACTGGACGGTGGACGGGACGG
ATGAGACGCTGCCCGAGGTCGTCAAGGAATTCAAGTTGGCCGTGGAGGAT
TCAGAGAATGTCAAGCGGAGGAAGAGAAAAAGCAACCTATAGCTGCTGCC
AGCATCTCTGAGATTCAGTCAGCAGCGCGATGCGAAAATTTCCGATGCGA
AACAAGATATTGATTTCATTATGCCGACGTGATGCTTTCTTCAAGCCTTA
ACGCTTTAGAGTAATAATATAGACAATTTTATACGATGTTCAAGATCCTA
ACAAGTTGGATAGATACTTTGCTTGTACTAAGTATTCTAACAATAAATAA
TGTTTGATTTAATTAAAAAAAAAAAAAAAAAA

GH02816.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5707-RA 1614 CG5707-RA 135..1602 1..1468 7340 100 Plus
CG5707.a 1322 CG5707.a 70..1318 220..1468 6245 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 2188596..2189843 1464..217 6090 99.2 Minus
chr3L 24539361 chr3L 2191369..2191588 220..1 1055 98.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:28:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2189162..2190413 1468..217 6260 100 Minus
3L 28110227 3L 2191939..2192158 220..1 1100 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 2189162..2190413 1468..217 6260 100 Minus
3L 28103327 3L 2191939..2192158 220..1 1100 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:40:37 has no hits.

GH02816.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:41:31 Download gff for GH02816.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 2188596..2189840 220..1464 99 <- Minus
chr3L 2191370..2191588 1..219 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:08:48 Download gff for GH02816.complete
Subject Subject Range Query Range Percent Splice Strand
CG5707-RA 1..1074 169..1242 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:10:15 Download gff for GH02816.complete
Subject Subject Range Query Range Percent Splice Strand
CG5707-RA 1..1074 169..1242 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:10:10 Download gff for GH02816.complete
Subject Subject Range Query Range Percent Splice Strand
CG5707-RA 1..1074 169..1242 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:41:06 Download gff for GH02816.complete
Subject Subject Range Query Range Percent Splice Strand
CG5707-RA 1..1074 169..1242 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:41:01 Download gff for GH02816.complete
Subject Subject Range Query Range Percent Splice Strand
CG5707-RA 1..1074 169..1242 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:01:19 Download gff for GH02816.complete
Subject Subject Range Query Range Percent Splice Strand
CG5707-RA 23..1486 1..1464 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:10:15 Download gff for GH02816.complete
Subject Subject Range Query Range Percent Splice Strand
CG5707-RA 23..1486 1..1464 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:10:10 Download gff for GH02816.complete
Subject Subject Range Query Range Percent Splice Strand
CG5707-RA 64..1527 1..1464 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:41:07 Download gff for GH02816.complete
Subject Subject Range Query Range Percent Splice Strand
CG5707-RA 23..1486 1..1464 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:01 Download gff for GH02816.complete
Subject Subject Range Query Range Percent Splice Strand
CG5707-RA 64..1527 1..1464 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:41:31 Download gff for GH02816.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2191940..2192158 1..219 100   Minus
3L 2189166..2190410 220..1464 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:41:31 Download gff for GH02816.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2191940..2192158 1..219 100   Minus
3L 2189166..2190410 220..1464 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:41:31 Download gff for GH02816.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2191940..2192158 1..219 100   Minus
3L 2189166..2190410 220..1464 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:10:10 Download gff for GH02816.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2189166..2190410 220..1464 100 <- Minus
arm_3L 2191940..2192158 1..219 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:18:43 Download gff for GH02816.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2189166..2190410 220..1464 100 <- Minus
3L 2191940..2192158 1..219 100   Minus

GH02816.pep Sequence

Translation from 168 to 1241

> GH02816.pep
MTSNSEGRGNPIETHEQEPMDVRIDMPWGYVVGKWYGNRQVRPILALHGW
LDNLGTWDKLLPLLPKHLGVLCIDLPGHGYSSKLPEGIAYHFVDYLCVIL
RVMEEYRWQKVSLMAHSMSAMLCFVFASLYPHRTDMLVSIDIVKTRYRKP
PSQIDYLRKNIEGYIVEDERFANSKRQEPPAYTYTEMEQVLYKGTDYSVE
LENCRHILERNISRSTKFPAKFFFSRDGRCKYYTEFHTSPPFAAELARTI
KNVPYCVIKGSESNYIDEQSDEVIGILRENNPHFELHEVQGTHHVHLNNA
QGVAAVINPFILHHRPPHLENWTVDGTDETLPEVVKEFKLAVEDSENVKR
RKRKSNL*

GH02816.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24930-PA 362 GF24930-PA 1..362 1..357 1731 87.8 Plus
Dana\GF24933-PA 344 GF24933-PA 12..320 22..328 811 47.2 Plus
Dana\GF24932-PA 342 GF24932-PA 11..341 21..352 808 46.4 Plus
Dana\GF24931-PA 315 GF24931-PA 6..298 20..315 736 45.8 Plus
Dana\GF24201-PA 348 GF24201-PA 37..325 21..311 702 44 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14529-PA 357 GG14529-PA 1..357 1..357 1777 93.8 Plus
Dere\GG14532-PA 344 GG14532-PA 11..321 21..331 831 47.9 Plus
Dere\GG14531-PA 335 GG14531-PA 12..318 22..331 811 49.2 Plus
Dere\GG14530-PA 314 GG14530-PA 15..309 21..317 794 48.7 Plus
Dere\GG13244-PA 349 GG13244-PA 38..331 21..316 725 46 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16485-PA 353 GH16485-PA 1..353 1..357 1562 79.9 Plus
Dgri\GH16488-PA 343 GH16488-PA 11..322 21..333 872 49.8 Plus
Dgri\GH23210-PA 318 GH23210-PA 11..306 21..317 779 48.2 Plus
Dgri\GH16489-PA 318 GH16489-PA 11..306 21..317 779 48.2 Plus
Dgri\GH16159-PA 359 GH16159-PA 48..341 21..316 720 45.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5707-PA 357 CG5707-PA 1..357 1..357 1929 100 Plus
CG5707-PC 361 CG5707-PC 16..361 12..357 1841 98.6 Plus
CG5707-PB 361 CG5707-PB 16..361 12..357 1841 98.6 Plus
CG15879-PA 342 CG15879-PA 8..319 21..331 877 49.7 Plus
CG5704-PB 335 CG5704-PB 12..316 22..329 799 49.2 Plus
CG5704-PA 335 CG5704-PA 12..316 22..329 799 49.2 Plus
CG15820-PA 308 CG15820-PA 9..303 21..317 783 48 Plus
CG11309-PF 348 CG11309-PF 37..330 21..316 726 45.3 Plus
CG11309-PE 348 CG11309-PE 37..330 21..316 726 45.3 Plus
CG11309-PD 348 CG11309-PD 37..330 21..316 726 45.3 Plus
CG11309-PC 348 CG11309-PC 37..330 21..316 726 45.3 Plus
CG11309-PB 348 CG11309-PB 37..330 21..316 726 45.3 Plus
CG11309-PA 358 CG11309-PA 47..340 21..316 726 45.3 Plus
CG7632-PA 330 CG7632-PA 18..329 3..316 685 43.3 Plus
CG7632-PB 312 CG7632-PB 18..311 21..316 679 44.9 Plus
kraken-PB 331 CG3943-PB 44..328 24..311 404 34.5 Plus
kraken-PA 331 CG3943-PA 44..328 24..311 404 34.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12158-PA 395 GI12158-PA 56..395 17..357 1595 83.9 Plus
Dmoj\GI12160-PA 342 GI12160-PA 11..315 21..326 883 51 Plus
Dmoj\GI12161-PA 343 GI12161-PA 11..320 21..331 835 48.2 Plus
Dmoj\GI12011-PA 336 GI12011-PA 42..335 21..316 718 46.3 Plus
Dmoj\GI13311-PA 352 GI13311-PA 41..334 21..316 688 44.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24626-PA 348 GL24626-PA 11..348 21..357 873 50 Plus
Dper\GL24627-PA 331 GL24627-PA 11..310 21..321 780 49.3 Plus
Dper\GL24589-PA 348 GL24589-PA 37..330 21..316 712 45 Plus
Dper\GL24680-PA 330 GL24680-PA 36..329 21..316 679 45.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19073-PA 365 GA19073-PA 19..365 12..357 1658 86.2 Plus
Dpse\GA23367-PA 348 GA23367-PA 11..348 21..357 890 50.9 Plus
Dpse\GA23368-PA 332 GA23368-PA 11..310 21..321 774 48.7 Plus
Dpse\GA10906-PA 348 GA10906-PA 37..330 21..316 712 45 Plus
Dpse\GA20494-PA 330 GA20494-PA 20..329 5..316 686 44.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14135-PA 300 GM14135-PA 1..300 1..357 1294 74.5 Plus
Dsec\GM14139-PA 345 GM14139-PA 11..322 21..331 857 49 Plus
Dsec\GM14136-PA 308 GM14136-PA 9..303 21..317 790 48.7 Plus
Dsec\GM26924-PA 355 GM22149-PA 44..337 21..316 718 45 Plus
Dsec\GM14137-PA 323 GM14137-PA 6..313 11..317 705 42.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13405-PA 357 GD13405-PA 1..357 1..357 1783 94.7 Plus
Dsim\GD13410-PA 345 GD13410-PA 11..322 21..331 856 49 Plus
Dsim\GD13408-PA 335 GD13408-PA 12..316 22..329 812 49.8 Plus
Dsim\GD13406-PA 308 GD13406-PA 9..303 21..317 793 48.7 Plus
Dsim\GD12125-PA 360 GD12125-PA 49..342 21..316 721 45.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13437-PA 357 GJ13437-PA 15..357 13..357 1584 82.9 Plus
Dvir\GJ11632-PA 343 GJ11632-PA 11..342 21..353 876 48.1 Plus
Dvir\GJ13440-PA 343 GJ13440-PA 11..343 21..357 867 47.2 Plus
Dvir\GJ13439-PA 340 GJ13439-PA 11..331 21..344 862 49.1 Plus
Dvir\GJ12081-PA 357 GJ12081-PA 46..339 21..316 709 45.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12598-PA 358 GK12598-PA 11..358 12..357 1604 85.9 Plus
Dwil\GK12602-PA 346 GK12602-PA 11..319 21..329 873 50.5 Plus
Dwil\GK20424-PA 352 GK20424-PA 32..333 13..316 708 44.4 Plus
Dwil\GK20467-PA 335 GK20467-PA 22..334 2..316 683 42.5 Plus
Dwil\GK24439-PA 338 GK24439-PA 47..335 24..311 431 35 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20878-PA 357 GE20878-PA 1..357 1..357 1780 94.1 Plus
Dyak\GE20884-PA 341 GE20884-PA 8..318 21..331 866 48.9 Plus
Dyak\GE20883-PA 335 GE20883-PA 12..318 22..331 818 50.5 Plus
Dyak\GE20881-PA 314 GE20881-PA 15..310 21..318 789 48.2 Plus
Dyak\GE22964-PA 348 GE22964-PA 37..330 21..316 717 45.3 Plus

GH02816.hyp Sequence

Translation from 168 to 1241

> GH02816.hyp
MTSNSEGRGNPIETHEQEPMDVRIDMPWGYVVGKWYGNRQVRPILALHGW
LDNLGTWDKLLPLLPKHLGVLCIDLPGHGYSSKLPEGIAYHFVDYLCVIL
RVMEEYRWQKVSLMAHSMSAMLCFVFASLYPHRTDMLVSIDIVKTRYRKP
PSQIDYLRKNIEGYIVEDERFANSKRQEPPAYTYTEMEQVLYKGTDYSVE
LENCRHILERNISRSTKFPAKFFFSRDGRCKYYTEFHTSPPFAAELARTI
KNVPYCVIKGSESNYIDEQSDEVIGILRENNPHFELHEVQGTHHVHLNNA
QGVAAVINPFILHHRPPHLENWTVDGTDETLPEVVKEFKLAVEDSENVKR
RKRKSNL*

GH02816.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5707-PA 357 CG5707-PA 1..357 1..357 1929 100 Plus
CG5707-PC 361 CG5707-PC 16..361 12..357 1841 98.6 Plus
CG5707-PB 361 CG5707-PB 16..361 12..357 1841 98.6 Plus
CG15879-PA 342 CG15879-PA 8..319 21..331 877 49.7 Plus
CG5704-PB 335 CG5704-PB 12..316 22..329 799 49.2 Plus