Clone GH02822 Report

Search the DGRC for GH02822

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:28
Well:22
Vector:pOT2
Associated Gene/TranscriptTM9SF4-RA
Protein status:GH02822.pep: gold
Preliminary Size:174
Sequenced Size:2441

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7364 2001-01-01 Release 2 assignment
CG16861 2001-01-01 Release 2 assignment
CG7364 2001-09-19 Blastp of sequenced clone
CG7364 2003-01-01 Sim4 clustering to Release 3
CG7364 2008-04-29 Release 5.5 accounting
CG7364 2008-08-15 Release 5.9 accounting
CG7364 2008-12-18 5.12 accounting

Clone Sequence Records

GH02822.complete Sequence

2441 bp (2441 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058275

> GH02822.complete
AATTGCCAGCAGGGAGACGCAGAAACTACATTATATATACAAAATATATA
GTTTCTAGCGGAATTTCTGCCAACAAAAGGGGTCCAGTGGTTACTTCACT
AGCACTCCCACACACCACCAACAATGCAGTCCGGGGCTCTGGCTAGGCCA
TGTCTGGCGATAGTCCTGCTGGCGGGCGTCGTCCTGGTGGCCGACTCCTT
CTACGTGCCCGGCGTGGCGCCGGTGGAGTTCGTACAAGACCAAAAGATCG
ACGTGAAAGCCGTGAAGATGACTAGCAGCCGCACCCAGCTGCCATATCAG
TACTACTCTCTTAGGTTCTGCTATCCCAAGAATGGCACGCTCATCTTTAA
GTCAGAGAATTTGGGTGAAGTTCTGCGCGGCGACCGAATCGTCAATACGC
CTTACGAGGTGCGGATGAACCAGCAGGTCAACTGCCGGCTGTTGTGCAAC
CAGAAGGACAGACCGCTCACTTGGAGTAAAGAGGACTCCGCACTGGTTGC
GGAGCGCATCCAGCACGAGTACTTTGTGCATCTGCTCGTGGACAATCTGC
CGGTGGCCACGCGCATCGTCAGCGTTAACAATCCCGCGGAGGTGACCTAC
GAGCACGGGTATCGTCTAGGCCAAGTGGACGGGGACAACATCTACATCAA
TAACCACCTGAAGTTTATCCTATCCTACCACATGCACTCCAAGGATAAGT
ATCGTGTGGTTGGCTTTGAGGTGGAAACCGTTTCGGTCAGTCACAAAGAG
CTGAAATTCCATGGGGACACCTGCAACTTCCCAGACAGCGCCCGACCGCA
GCTGGTCAATCCGAACGGAGAGACGCAGCTATATTTCACGTACTCTGTGG
AGTGGAAGGAGTCCAAGGTGAGCTGGGCCTCACGATGGGACATCTACCTT
GGCATGCGCGATGTCCAGATCCATTGGTTCAGCATCATCAACTCGCTAGT
GGTGGTCTTCTTCCTGTCTGGCATTCTCACTATGATTATGATTCGCACCC
TGCGTCGAGACATTGCCCGCTACAATACGGATGACAATATTGAAGATACA
TTGGAGGAGACCGGTTGGAAGCTTGTGCATGGAGACGTATTCCGTCCGCC
CAAGAATACTAGGCTGTTTTCCGCGATTATCGGCAGTGGCATTCAGATCT
TCTTTATGGCCCTCATCACCATCTTCTTTGCCATGTTGGGCATGCTGTCG
CCATCGTCGCGTGGCGCGCTCATGACCTCGGGCATTTTTATGTACGTTTT
CATGGGCACTATTGCAGGATACTATGCTGCCCGTCTCTACAAAACAATGA
AGGGTCGCGAGTGGAAGCGGGCCGCCTTTCTCACCGCTACTCTGTATCCA
GGCATTGTCTTTGGCACTGGATTCTTCTTGAACTTTTTTATTTGGGACAA
GTCGTCTAGCGGTGCCGTTCCCTTTACCACCATGATCTCACTGCTGCTGC
TATGGTTTGGCATCTCTGTGCCCCTGGTCTACCTGGGCTTTTATTTGGGA
TACCGCAAGCAACCCTACCAGCATCCAGTGCGAACCAATATGATTCCGCG
ACAAGTGCCCACACAGCACTGGTACATGAATGCGGTTTTAAGCACTCTGA
TGGCGGGCATCTTGCCCTTTGGCGCCGTCTTCATTGAACTCTTCTTTGTG
TTCACGGCCATCTGGCAGAATCAGTTCTACTACCTGTTTGGCTTTCTATT
CTTGGTGTTTTGCATCTTAGTCGTAAGCTGTGCCCAGATCTCTATAGTAA
TGACTTATTTCCAGCTCTGCGGTGAGGACTACCGCTGGTGGTGGCGCAGT
TTTGTTGTGTCTGGCGGCTCGGCTGTTTATGTACTTTTTTATAGCATCTT
CTACTTTTTCACAAAGCTGGAGATCACAGAGTTCATACCGACGCTGCTCT
ACCTGGGCTATACGGGTCTTATGGTGCTCACATTTTGGCTGCTAACTGGC
TCGATTGGCTTCTTCGCCGCCTACGTTTTCATTCTAAGAATCTACGGAGC
TGTGAAGATCGACTAAGCTGTGTCACCCACTCGTCACGCTGTACACCAAA
CTATCCTTGCAATATCATTCGATCATAAATATATTTATAGAGCAACTGAA
CCCAGTCTCGTCCAGCTGCAGAAATCAATATAAACAAAACGGAAACTAAG
CGAAAACTCGACGACTCAGCCATGTGAGCTAACTTCCCCTTCTTGTCCCC
AGCTGCAGAAAGTCACCCACTAAGTAACCATTTACTAAGTCAAAACGCTA
AATTCAGCAAGTACGTTTTGGAACCCCGGAAGTGACTCGATTTGCAGGAG
CGTGAGCGTTGCGTTTTAGAATCAATCTAGAAATGCCTAATTTATATATG
TATGTAAAGAATCTAATCTAAGCAACTGATATAAAACAAACAAAAATCAA
ATAAACTAAGCTTAATGTACGACAAAAAAAAAAAAAAAAAA

GH02822.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
TM9SF4-RA 2632 TM9SF4-RA 45..2468 1..2424 12120 100 Plus
TM9SF4.a 2837 TM9SF4.a 250..2673 1..2424 12120 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13770046..13771283 127..1364 6190 100 Plus
chr2L 23010047 chr2L 13772094..13772602 1915..2423 2545 100 Plus
chr2L 23010047 chr2L 13771352..13771580 1364..1592 1145 100 Plus
chr2L 23010047 chr2L 13771643..13771829 1591..1777 935 100 Plus
chr2L 23010047 chr2L 13771894..13772036 1775..1917 715 100 Plus
chr2L 23010047 chr2L 13769830..13769958 1..129 645 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:28:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13771334..13772571 127..1364 6190 100 Plus
2L 23513712 2L 13773382..13773891 1915..2424 2550 100 Plus
2L 23513712 2L 13772640..13772868 1364..1592 1145 100 Plus
2L 23513712 2L 13772931..13773117 1591..1777 935 100 Plus
2L 23513712 2L 13773182..13773324 1775..1917 715 100 Plus
2L 23513712 2L 13771118..13771246 1..129 645 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13771334..13772571 127..1364 6190 100 Plus
2L 23513712 2L 13773382..13773891 1915..2424 2550 100 Plus
2L 23513712 2L 13772640..13772868 1364..1592 1145 100 Plus
2L 23513712 2L 13772931..13773117 1591..1777 935 100 Plus
2L 23513712 2L 13773182..13773324 1775..1917 715 100 Plus
2L 23513712 2L 13771118..13771246 1..129 645 100 Plus
Blast to na_te.dros performed on 2019-03-16 08:48:27 has no hits.

GH02822.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:49:17 Download gff for GH02822.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13769830..13769958 1..129 100 -> Plus
chr2L 13770049..13771283 130..1364 100 -> Plus
chr2L 13771353..13771580 1365..1592 100 -> Plus
chr2L 13771645..13771828 1593..1776 100 -> Plus
chr2L 13771896..13772034 1777..1915 100 -> Plus
chr2L 13772095..13772602 1916..2423 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:08:51 Download gff for GH02822.complete
Subject Subject Range Query Range Percent Splice Strand
CG7364-RA 1..1893 124..2016 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:09:31 Download gff for GH02822.complete
Subject Subject Range Query Range Percent Splice Strand
TM9SF4-RA 1..1893 124..2016 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:54:14 Download gff for GH02822.complete
Subject Subject Range Query Range Percent Splice Strand
TM9SF4-RA 1..1893 124..2016 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:40:27 Download gff for GH02822.complete
Subject Subject Range Query Range Percent Splice Strand
CG7364-RA 1..1893 124..2016 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:51:37 Download gff for GH02822.complete
Subject Subject Range Query Range Percent Splice Strand
TM9SF4-RA 1..1893 124..2016 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:00:29 Download gff for GH02822.complete
Subject Subject Range Query Range Percent Splice Strand
CG7364-RA 32..2454 1..2423 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:09:31 Download gff for GH02822.complete
Subject Subject Range Query Range Percent Splice Strand
TM9SF4-RA 32..2454 1..2423 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:14 Download gff for GH02822.complete
Subject Subject Range Query Range Percent Splice Strand
TM9SF4-RA 24..2446 1..2423 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:40:27 Download gff for GH02822.complete
Subject Subject Range Query Range Percent Splice Strand
CG7364-RA 32..2454 1..2423 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:51:37 Download gff for GH02822.complete
Subject Subject Range Query Range Percent Splice Strand
TM9SF4-RA 24..2446 1..2423 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:49:17 Download gff for GH02822.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13771118..13771246 1..129 100 -> Plus
2L 13771337..13772571 130..1364 100 -> Plus
2L 13772641..13772868 1365..1592 100 -> Plus
2L 13772933..13773116 1593..1776 100 -> Plus
2L 13773184..13773322 1777..1915 100 -> Plus
2L 13773383..13773890 1916..2423 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:49:17 Download gff for GH02822.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13771118..13771246 1..129 100 -> Plus
2L 13771337..13772571 130..1364 100 -> Plus
2L 13772641..13772868 1365..1592 100 -> Plus
2L 13772933..13773116 1593..1776 100 -> Plus
2L 13773184..13773322 1777..1915 100 -> Plus
2L 13773383..13773890 1916..2423 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:49:17 Download gff for GH02822.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13771118..13771246 1..129 100 -> Plus
2L 13771337..13772571 130..1364 100 -> Plus
2L 13772641..13772868 1365..1592 100 -> Plus
2L 13772933..13773116 1593..1776 100 -> Plus
2L 13773184..13773322 1777..1915 100 -> Plus
2L 13773383..13773890 1916..2423 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:14 Download gff for GH02822.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13771118..13771246 1..129 100 -> Plus
arm_2L 13771337..13772571 130..1364 100 -> Plus
arm_2L 13772641..13772868 1365..1592 100 -> Plus
arm_2L 13772933..13773116 1593..1776 100 -> Plus
arm_2L 13773184..13773322 1777..1915 100 -> Plus
arm_2L 13773383..13773890 1916..2423 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:17:57 Download gff for GH02822.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13771118..13771246 1..129 100 -> Plus
2L 13772933..13773116 1593..1776 100 -> Plus
2L 13773184..13773322 1777..1915 100 -> Plus
2L 13771337..13772571 130..1364 100 -> Plus
2L 13772641..13772868 1365..1592 100 -> Plus
2L 13773383..13773890 1916..2423 100   Plus

GH02822.pep Sequence

Translation from 123 to 2015

> GH02822.pep
MQSGALARPCLAIVLLAGVVLVADSFYVPGVAPVEFVQDQKIDVKAVKMT
SSRTQLPYQYYSLRFCYPKNGTLIFKSENLGEVLRGDRIVNTPYEVRMNQ
QVNCRLLCNQKDRPLTWSKEDSALVAERIQHEYFVHLLVDNLPVATRIVS
VNNPAEVTYEHGYRLGQVDGDNIYINNHLKFILSYHMHSKDKYRVVGFEV
ETVSVSHKELKFHGDTCNFPDSARPQLVNPNGETQLYFTYSVEWKESKVS
WASRWDIYLGMRDVQIHWFSIINSLVVVFFLSGILTMIMIRTLRRDIARY
NTDDNIEDTLEETGWKLVHGDVFRPPKNTRLFSAIIGSGIQIFFMALITI
FFAMLGMLSPSSRGALMTSGIFMYVFMGTIAGYYAARLYKTMKGREWKRA
AFLTATLYPGIVFGTGFFLNFFIWDKSSSGAVPFTTMISLLLLWFGISVP
LVYLGFYLGYRKQPYQHPVRTNMIPRQVPTQHWYMNAVLSTLMAGILPFG
AVFIELFFVFTAIWQNQFYYLFGFLFLVFCILVVSCAQISIVMTYFQLCG
EDYRWWWRSFVVSGGSAVYVLFYSIFYFFTKLEITEFIPTLLYLGYTGLM
VLTFWLLTGSIGFFAAYVFILRIYGAVKID*

GH02822.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23049-PA 625 GF23049-PA 10..625 13..630 3210 97.1 Plus
Dana\GF14550-PA 663 GF14550-PA 26..663 23..630 1348 41.9 Plus
Dana\GF10453-PA 599 GF10453-PA 65..599 55..630 824 34.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23874-PA 630 GG23874-PA 1..630 1..630 3346 99.4 Plus
Dere\GG21552-PA 659 GG21552-PA 22..659 23..630 1344 42.1 Plus
Dere\GG14121-PA 592 GG14121-PA 58..592 55..630 832 34.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11109-PA 626 GH11109-PA 7..626 11..630 3090 92.4 Plus
Dgri\GH10847-PA 659 GH10847-PA 19..659 21..630 1355 42.1 Plus
Dgri\GH15015-PA 585 GH15015-PA 51..585 55..630 814 34.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
TM9SF4-PB 630 CG7364-PB 1..630 1..630 3328 100 Plus
TM9SF4-PA 630 CG7364-PA 1..630 1..630 3328 100 Plus
TM9SF2-PB 659 CG9318-PB 9..659 9..630 1356 41.8 Plus
TM9SF2-PA 659 CG9318-PA 9..659 9..630 1356 41.8 Plus
TM9SF3-PA 592 CG10590-PA 58..592 55..630 925 35.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18231-PA 626 GI18231-PA 7..626 11..630 3117 93.4 Plus
Dmoj\GI19598-PA 657 GI19598-PA 10..657 13..630 1380 43.1 Plus
Dmoj\GI13177-PA 585 GI13177-PA 51..585 55..630 810 34.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21220-PA 634 GL21220-PA 7..634 5..630 3203 95.1 Plus
Dper\GL19593-PA 624 GL19593-PA 24..624 23..630 1188 38.8 Plus
Dper\GL11985-PA 590 GL11985-PA 57..590 55..630 753 33 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20298-PA 634 GA20298-PA 7..634 5..630 3199 94.9 Plus
Dpse\GA21696-PA 661 GA21696-PA 24..661 23..630 1346 41.8 Plus
Dpse\GA10420-PA 591 GA10420-PA 57..591 55..630 843 34.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15157-PA 630 GM15157-PA 1..630 1..630 3337 99 Plus
Dsec\GM23311-PA 659 GM23311-PA 22..659 23..630 1349 42.1 Plus
Dsec\GM13907-PA 592 GM13907-PA 58..592 55..630 838 35.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23917-PA 623 GD23917-PA 1..623 1..630 3279 97.9 Plus
Dsim\GD21683-PA 659 GD21683-PA 22..659 23..630 1349 42.1 Plus
Dsim\GD13184-PA 645 GD13184-PA 58..645 55..630 822 32.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18139-PA 626 GJ18139-PA 7..626 11..630 3103 92.4 Plus
Dvir\GJ17423-PA 657 GJ17423-PA 7..657 11..630 1367 41.1 Plus
Dvir\GJ11952-PA 585 GJ11952-PA 51..585 55..630 832 34.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18190-PA 630 GK18190-PA 22..630 22..630 3163 96.6 Plus
Dwil\GK14911-PA 665 GK14911-PA 19..665 13..630 1350 40.8 Plus
Dwil\GK16877-PA 586 GK16877-PA 52..586 55..630 817 34.4 Plus
Dwil\GK15232-PA 666 GK15232-PA 23..634 22..628 578 27.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18677-PA 630 GE18677-PA 1..630 1..630 3325 98.4 Plus
Dyak\GE13546-PA 659 GE13546-PA 13..659 14..630 1349 42 Plus
Dyak\GE20545-PA 593 GE20545-PA 59..593 55..630 837 35.1 Plus

GH02822.hyp Sequence

Translation from 123 to 2015

> GH02822.hyp
MQSGALARPCLAIVLLAGVVLVADSFYVPGVAPVEFVQDQKIDVKAVKMT
SSRTQLPYQYYSLRFCYPKNGTLIFKSENLGEVLRGDRIVNTPYEVRMNQ
QVNCRLLCNQKDRPLTWSKEDSALVAERIQHEYFVHLLVDNLPVATRIVS
VNNPAEVTYEHGYRLGQVDGDNIYINNHLKFILSYHMHSKDKYRVVGFEV
ETVSVSHKELKFHGDTCNFPDSARPQLVNPNGETQLYFTYSVEWKESKVS
WASRWDIYLGMRDVQIHWFSIINSLVVVFFLSGILTMIMIRTLRRDIARY
NTDDNIEDTLEETGWKLVHGDVFRPPKNTRLFSAIIGSGIQIFFMALITI
FFAMLGMLSPSSRGALMTSGIFMYVFMGTIAGYYAARLYKTMKGREWKRA
AFLTATLYPGIVFGTGFFLNFFIWDKSSSGAVPFTTMISLLLLWFGISVP
LVYLGFYLGYRKQPYQHPVRTNMIPRQVPTQHWYMNAVLSTLMAGILPFG
AVFIELFFVFTAIWQNQFYYLFGFLFLVFCILVVSCAQISIVMTYFQLCG
EDYRWWWRSFVVSGGSAVYVLFYSIFYFFTKLEITEFIPTLLYLGYTGLM
VLTFWLLTGSIGFFAAYVFILRIYGAVKID*

GH02822.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:30:50
Subject Length Description Subject Range Query Range Score Percent Strand
TM9SF4-PB 630 CG7364-PB 1..630 1..630 3328 100 Plus
TM9SF4-PA 630 CG7364-PA 1..630 1..630 3328 100 Plus
CG9318-PB 659 CG9318-PB 9..659 9..630 1356 41.8 Plus
CG9318-PA 659 CG9318-PA 9..659 9..630 1356 41.8 Plus
CG10590-PA 592 CG10590-PA 58..592 55..630 925 35.1 Plus