Clone GH02855 Report

Search the DGRC for GH02855

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:28
Well:55
Vector:pOT2
Associated Gene/TranscriptMocs2-RA
Protein status:GH02855.pep: gold
Preliminary Size:1578
Sequenced Size:1403

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10238 2001-01-01 Release 2 assignment
CG10238 2001-07-04 Blastp of sequenced clone
CG10238 2003-01-01 Sim4 clustering to Release 3
CG10238 2008-04-29 Release 5.5 accounting
CG10238 2008-08-15 Release 5.9 accounting
CG10238 2008-12-18 5.12 accounting

Clone Sequence Records

GH02855.complete Sequence

1403 bp (1403 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047520

> GH02855.complete
TCAACGTGCACGTGTTGTTCTTTGCTAAATCCCGTGAATTAGCAAACACT
CCCCGGTCGACAGTGGAAGTTCCTACTGAAATTACTGCCACCGAACTGCT
GGACCACCTGGTGTCCAAATTTGGCCTGACCTCCATCCGGGATAACTTGA
TTTTGGCCCACAACGAGTCGTACATTGACAACCTGAGTGATAGAATTCTG
TTTAAGGAAGGAGACGAACTCGCCATCATACCGCCACTGAGTGGAGGCTA
ACCTTTCCGCCATGGATCACGTGAAATTGGTAAACGACCCCATAGATATC
GCTCATATCCATCAGTTGCTGGCCGATGAAGGCTGTGGAGCCTCATCCGT
TTTCGTGGGCACTACGCGCGATAATTTTCAAGGGAAAAAGGTGCTGTCAT
TGGCGTACGAGGCCTACGATAGCATGGCACTCAAGGAAATGAATAAAATA
TGCTCAGATCTCCGATCTAAGTGGCTCGATCTGAAGCACATAGTCATATA
TCATCGATTGGGAACAGTGCCCGTATGCGAAGCCAGTGTAGTTATAGCCG
CCTCGTCACCACATCGTTCTGAGGCCTTAGAATCAGTATCTTTTGCAATA
GACCAGCTAAAAACTCGGGTTCCCATCTGGAAAAAGGAAATCTACGACGG
CGATAACGACAGCGAATGGAAGGAGAACAAGGAGTCCATCAGGCCTAAGA
AATCGAAAAGTGGCTTCAACTACGCCGCTTGTCCCTGCAAAGTTGAGGAG
TCACATGACGTCCCGCGAACTCTGGTGCAAATTAGAGTTAATGACGCTGA
GTTAACCAAGCGTTTAGAATGTTTTGTCAACAGAAAACGAGACGAAATAA
ACTCACAAAATGTAATTGACTTCAAATCGTCTTTTGTCAGCTCAGACCAA
AACTTGAGCGATTCCTGCGCTCGAACGCAGAGCACAATTATTAAGCAGGA
GCAGTCAAATTGCCATTTAAAAGTCCGACGAGTAAACAACCGATGCGGAC
CTCAGCAAATGGAAATGCGACCCAACTACGAACTCGAACTGAATAAACTA
ATGGGATCGCGTGACGGTCAAACGGATCCAACCAAAGAAATGAGGAAATC
GCTACCCAATTCACGACTACAGGCAATTGAATCGTACATGGGTCTAACCA
CCGACAACGAGGAAAACATTTTCAGTAGAATCAAACGAGTGGAAAATAGA
CTGCTGCAACTGGAGTCCATTTCGCCCGAGTACAGACACTTCACCAAACG
TGAACCGTCATCTATGGAAGCCGCGCCGCCGAAGAAGAGCCGAAAGAAAT
CGTATTCGGCGCAAGAATTAAGTGCATTCATTCAAAAGATTAAGGATGGC
AGCGAATTAAGCTAATAAAAACCTAATTAATTATTAAAAAAAAAAAAAAA
AAA

GH02855.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
Mocs2-RA 1420 Mocs2-RA 36..1420 1..1385 6925 100 Plus
CG42503-RA 1420 CG42503-RA 36..1420 1..1385 6925 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20950084..20950476 393..1 1965 100 Minus
chr3R 27901430 chr3R 20949719..20950027 697..389 1545 100 Minus
chr3R 27901430 chr3R 20949319..20949594 973..698 1380 100 Minus
chr3R 27901430 chr3R 20948986..20949256 1242..972 1355 100 Minus
chr3R 27901430 chr3R 20948784..20948926 1385..1243 715 100 Minus
chrYHet 347003 chrYHet 307072..307213 1384..1243 665 97.9 Minus
chrYHet 347003 chrYHet 307259..307359 1242..1141 445 98 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 16:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
CR42201-RA 237 CR42201-RA 118..237 1243..1362 555 97.5 Plus
CR42201-RA 237 CR42201-RA 1..72 1171..1242 345 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25126932..25127324 393..1 1965 100 Minus
3R 32079331 3R 25126567..25126875 697..389 1545 100 Minus
3R 32079331 3R 25126167..25126442 973..698 1380 100 Minus
3R 32079331 3R 25125834..25126104 1242..972 1355 100 Minus
3R 32079331 3R 25125631..25125774 1386..1243 720 100 Minus
Y 3667352 Y 3024127..3024268 1384..1243 665 97.9 Minus
Y 3667352 Y 3024314..3024414 1242..1141 445 98 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24867763..24868155 393..1 1965 100 Minus
3R 31820162 3R 24867398..24867706 697..389 1545 100 Minus
3R 31820162 3R 24866998..24867273 973..698 1380 100 Minus
3R 31820162 3R 24866665..24866935 1242..972 1355 100 Minus
Unimproved_211000022235537_5_636 631 Unimproved_211000022235537_5_636 357..599 631..389 1125 97.5 Minus
Unimproved_211000022235537_5_636 631 Unimproved_211000022235537_5_636 191..348 1150..993 760 98.7 Minus
3R 31820162 3R 24866462..24866605 1386..1243 720 100 Minus
Y 3410481 Y 2870597..2870738 1384..1243 665 97.8 Minus
Y 3410481 Y 2870784..2870884 1242..1141 455 98 Minus
Blast to na_te.dros performed on 2019-03-15 15:49:56 has no hits.

GH02855.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:50:42 Download gff for GH02855.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20948784..20948926 1243..1385 100 <- Minus
chr3R 20948986..20949254 974..1242 100 <- Minus
chr3R 20949319..20949594 698..973 100 <- Minus
chr3R 20949719..20950025 391..697 100 <- Minus
chr3R 20950087..20950476 1..390 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:08:58 Download gff for GH02855.complete
Subject Subject Range Query Range Percent Splice Strand
CG10238-RA 1..1104 262..1365 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:30:01 Download gff for GH02855.complete
Subject Subject Range Query Range Percent Splice Strand
Mocs2-RA 1..1104 262..1365 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:42:53 Download gff for GH02855.complete
Subject Subject Range Query Range Percent Splice Strand
Mocs2-RA 1..1104 262..1365 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:03:29 Download gff for GH02855.complete
Subject Subject Range Query Range Percent Splice Strand
CG10238-RA 1..1104 262..1365 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:17:59 Download gff for GH02855.complete
Subject Subject Range Query Range Percent Splice Strand
Mocs2-RA 1..1104 262..1365 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 16:28:39 Download gff for GH02855.complete
Subject Subject Range Query Range Percent Splice Strand
CR42201-RA 1..72 1171..1242 98 -> Plus
CR42201-RA 118..237 1243..1362 97   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:30:40 Download gff for GH02855.complete
Subject Subject Range Query Range Percent Splice Strand
CG10238-RA 23..1407 1..1385 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:30:01 Download gff for GH02855.complete
Subject Subject Range Query Range Percent Splice Strand
Mocs2-RA 36..1420 1..1385 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:42:53 Download gff for GH02855.complete
Subject Subject Range Query Range Percent Splice Strand
CG42503-RA 36..1420 1..1385 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:03:29 Download gff for GH02855.complete
Subject Subject Range Query Range Percent Splice Strand
CG10238-RA 23..1407 1..1385 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:17:59 Download gff for GH02855.complete
Subject Subject Range Query Range Percent Splice Strand
Mocs2-RA 36..1420 1..1385 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:42 Download gff for GH02855.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25125632..25125774 1243..1385 100 <- Minus
3R 25125834..25126102 974..1242 100 <- Minus
3R 25126167..25126442 698..973 100 <- Minus
3R 25126567..25126873 391..697 100 <- Minus
3R 25126935..25127324 1..390 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:42 Download gff for GH02855.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25125632..25125774 1243..1385 100 <- Minus
3R 25125834..25126102 974..1242 100 <- Minus
3R 25126167..25126442 698..973 100 <- Minus
3R 25126567..25126873 391..697 100 <- Minus
3R 25126935..25127324 1..390 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:50:42 Download gff for GH02855.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25125632..25125774 1243..1385 100 <- Minus
3R 25125834..25126102 974..1242 100 <- Minus
3R 25126167..25126442 698..973 100 <- Minus
3R 25126567..25126873 391..697 100 <- Minus
3R 25126935..25127324 1..390 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:42:53 Download gff for GH02855.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20952289..20952595 391..697 100 <- Minus
arm_3R 20952657..20953046 1..390 100   Minus
arm_3R 20951354..20951496 1243..1385 100 <- Minus
arm_3R 20951556..20951824 974..1242 100 <- Minus
arm_3R 20951889..20952164 698..973 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:41:33 Download gff for GH02855.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24866665..24866933 974..1242 100 <- Minus
3R 24866998..24867273 698..973 100 <- Minus
3R 24867398..24867704 391..697 100 <- Minus
3R 24867766..24868155 1..390 100   Minus
3R 24866463..24866605 1243..1385 100 <- Minus

GH02855.hyp Sequence

Translation from 261 to 1364

> GH02855.hyp
MDHVKLVNDPIDIAHIHQLLADEGCGASSVFVGTTRDNFQGKKVLSLAYE
AYDSMALKEMNKICSDLRSKWLDLKHIVIYHRLGTVPVCEASVVIAASSP
HRSEALESVSFAIDQLKTRVPIWKKEIYDGDNDSEWKENKESIRPKKSKS
GFNYAACPCKVEESHDVPRTLVQIRVNDAELTKRLECFVNRKRDEINSQN
VIDFKSSFVSSDQNLSDSCARTQSTIIKQEQSNCHLKVRRVNNRCGPQQM
EMRPNYELELNKLMGSRDGQTDPTKEMRKSLPNSRLQAIESYMGLTTDNE
ENIFSRIKRVENRLLQLESISPEYRHFTKREPSSMEAAPPKKSRKKSYSA
QELSAFIQKIKDGSELS*

GH02855.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
Mocs2-PA 367 CG10238-PA 1..367 1..367 1895 100 Plus

GH02855.pep Sequence

Translation from 261 to 1364

> GH02855.pep
MDHVKLVNDPIDIAHIHQLLADEGCGASSVFVGTTRDNFQGKKVLSLAYE
AYDSMALKEMNKICSDLRSKWLDLKHIVIYHRLGTVPVCEASVVIAASSP
HRSEALESVSFAIDQLKTRVPIWKKEIYDGDNDSEWKENKESIRPKKSKS
GFNYAACPCKVEESHDVPRTLVQIRVNDAELTKRLECFVNRKRDEINSQN
VIDFKSSFVSSDQNLSDSCARTQSTIIKQEQSNCHLKVRRVNNRCGPQQM
EMRPNYELELNKLMGSRDGQTDPTKEMRKSLPNSRLQAIESYMGLTTDNE
ENIFSRIKRVENRLLQLESISPEYRHFTKREPSSMEAAPPKKSRKKSYSA
QELSAFIQKIKDGSELS*

GH02855.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17098-PA 363 GF17098-PA 1..362 1..362 1545 79.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12284-PA 367 GG12284-PA 1..367 1..367 1831 93.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19575-PA 362 GH19575-PA 1..357 1..361 1041 57.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
Mocs2B-PA 367 CG10238-PA 1..367 1..367 1895 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23778-PA 366 GI23778-PA 1..366 1..366 969 53.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21938-PA 361 GL21938-PA 1..355 1..359 1205 64.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10181-PA 361 GA10181-PA 1..355 1..359 1209 64.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17748-PA 367 GM17748-PA 1..367 1..367 1937 97.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18232-PA 367 GD18232-PA 1..367 1..367 1936 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23609-PA 345 GJ23609-PA 1..330 1..328 950 56.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13883-PA 372 GK13883-PA 1..368 1..362 1164 60.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10737-PA 367 GE10737-PA 1..367 1..367 1784 94.6 Plus