Clone GH02872 Report

Search the DGRC for GH02872

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:28
Well:72
Vector:pOT2
Associated Gene/TranscriptGNBP2-RC
Protein status:GH02872.pep: wuzgold
Preliminary Size:1513
Sequenced Size:1444

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4144 2001-01-01 Release 2 assignment
CG4144 2001-09-19 Blastp of sequenced clone
CG4144 2003-01-01 Sim4 clustering to Release 3
GNBP2 2008-04-29 Release 5.5 accounting
GNBP2 2008-08-15 Release 5.9 accounting
GNBP2 2008-12-18 5.12 accounting

Clone Sequence Records

GH02872.complete Sequence

1444 bp (1444 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058277

> GH02872.complete
CGCTAATCGGATTCTAGTTAGTACACATATTAAGAGTAATTAAAACTGCG
TCATGAGATGAGCCTGGCATACAGCGGGTGTTCTACATGTTCCAAATTGA
CGACACCTGCCCGGCTCTAATGGACTACATCACGGAGGCAGTGAACGGAA
GTTGGGTCTCCAAGCAAAAGATGAGTCTGCAGAACAACGACAAGCTGCAG
ATATCAATGCTGGTGCAGTTCAATGAGGAAATCTTCGAAAAGAGTGAAAC
CAGGGTGATCATAAACACCCGGCTACTGACCACCAAAGACTCTAGCTCGC
GAGGCATAACATTCCTTACAGGAGAGGGCGAGTGCCAGGCATACCTAGCT
CCTGCACAGCAAGCCAAACGCTGCAAGGCCGCCCAAACGATAGTGAGCAA
TGGACGCCATACTTGCCAGGGTGAACTGATCTTTGAGGACAACTTCTCGG
AGGCGCAGCTGAACAAGACCACCTGGAAGCATGACATCCGACAGCGCATG
TACCACGTGGAGGAGGAGCTGGTGGCCTTCGACGATGCCGCACGCAACTG
CTTTGTGAAGGAAGGCGAACTCCATATCGTTCCCACTATCGCCACCGAGG
TCACCGATGGCAGCTTCAAACTGGGAGATCGCTGTACGGCCGTCGAAAGT
CCGGAACAGGAGTGCAACATTGCGCACGGCATCTTCTATAGCATCAAGCC
TCCAGTTTTCTCCGCCCAAATTCACACCAGAAACTCTTTCAGTTTCAAAT
TTGGCAAAATCGTCGTGCGCGCCAAGTTGCCCAAGGGGGATTGGCTTTTC
CCCTGTGAGTAGCATACTAACTTACCTTTTCTTGTTACGAAAACGGTTTA
ATTTTTAATTTATTTAAGATCTGATGCTCCAACCGGTTTCCACTTACGCG
GAGACCCACTATGCCAAGCAATTGAGAATTGCATATGCCCGTGGCAATGC
CAATTTGAGGACGAAACAAGGAGATGATATCTCCGGAAACCACTTATATG
GCGGCGGTGTGGTTTGGCACCACGGCAATGCAGTACAGTTCCTCAAGGAC
AAGATAAGCAACAGCCACTACGGGGACGACTTTCACAACTACACCATGAT
CTGGCAGAGGGATAAGATTACCCTAATGGTAGACGATGAGGTTTATGGGG
AGCTGTACGACGGACTGCCATTCTTCAACGAGAAGTGCTTTATTATCTTT
GGCGTTACGGTGGGCGGCTTCCTGAACTTCGACGATAGTCTATTGGCCAA
GGATGTCAAGCCTTATAAAAACAGGGAACCCCGGGCTGCCCTCTCATTTT
GGCAGCACCGCGATGCTTGGGCCCCCACTTGGGGCAGGCACAGCGCCATG
GTCATAGACTATGTTAGGGTTTATGCGGAGTAGCTGTGGCATTTGTCACC
AAAATATAAATAAAGTACTTAAACATCAAAAAAAAAAAAAAAAA

GH02872.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP2-RC 1428 GNBP2-RC 1..1428 1..1428 7140 100 Plus
GNBP2-RB 1571 GNBP2-RB 207..955 56..804 3745 100 Plus
GNBP2-RA 1447 GNBP2-RA 132..880 56..804 3745 100 Plus
GNBP2-RB 1571 GNBP2-RB 956..1516 869..1429 2805 100 Plus
GNBP2-RA 1447 GNBP2-RA 881..1441 869..1429 2805 100 Plus
GNBP2-RB 1571 GNBP2-RB 33..89 1..57 285 100 Plus
GNBP2-RA 1447 GNBP2-RA 20..76 1..57 285 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 18663153..18663654 1427..926 2510 100 Minus
chr3L 24539361 chr3L 18663726..18664162 926..490 2170 99.8 Minus
chr3L 24539361 chr3L 18664224..18664658 490..56 2160 99.8 Minus
chr3L 24539361 chr3L 18665017..18665073 57..1 285 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:28:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18673472..18673975 1429..926 2520 100 Minus
3L 28110227 3L 18674047..18674483 926..490 2185 100 Minus
3L 28110227 3L 18674545..18674979 490..56 2175 100 Minus
3L 28110227 3L 18675338..18675394 57..1 285 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 18666572..18667075 1429..926 2520 100 Minus
3L 28103327 3L 18667147..18667583 926..490 2185 100 Minus
3L 28103327 3L 18667645..18668079 490..56 2175 100 Minus
3L 28103327 3L 18668438..18668494 57..1 285 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:30:09 has no hits.

GH02872.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:31:01 Download gff for GH02872.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 18663153..18663654 926..1427 100 <- Minus
chr3L 18663727..18664161 491..925 94 <- Minus
chr3L 18664224..18664656 58..490 99 <- Minus
chr3L 18665017..18665073 1..57 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:09:04 Download gff for GH02872.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RA 785..1299 869..1383 100   Plus
GNBP2-RA 36..784 56..804 100 == Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:10:08 Download gff for GH02872.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RA 36..784 56..804 100 == Plus
GNBP2-RA 785..1299 869..1383 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:12:27 Download gff for GH02872.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RB 123..871 56..804 100 == Plus
GNBP2-RB 872..1386 869..1383 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:41:00 Download gff for GH02872.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RA 36..784 56..804 100 == Plus
GNBP2-RA 785..1299 869..1383 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:01:53 Download gff for GH02872.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RB 123..871 56..804 100 == Plus
GNBP2-RB 872..1386 869..1383 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:01:11 Download gff for GH02872.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RC 1..1427 1..1427 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:10:07 Download gff for GH02872.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RC 1..1427 1..1427 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:12:27 Download gff for GH02872.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RC 1..1427 1..1427 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:41:01 Download gff for GH02872.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RC 1..1427 1..1427 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:53 Download gff for GH02872.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP2-RB 20..76 1..57 100 -> Plus
GNBP2-RB 196..942 58..804 100 == Plus
GNBP2-RB 943..1501 869..1427 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:31:01 Download gff for GH02872.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18673474..18673975 926..1427 100 <- Minus
3L 18674048..18674482 491..925 100 <- Minus
3L 18674545..18674977 58..490 100 <- Minus
3L 18675338..18675394 1..57 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:31:01 Download gff for GH02872.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18673474..18673975 926..1427 100 <- Minus
3L 18674048..18674482 491..925 100 <- Minus
3L 18674545..18674977 58..490 100 <- Minus
3L 18675338..18675394 1..57 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:31:01 Download gff for GH02872.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18673474..18673975 926..1427 100 <- Minus
3L 18674048..18674482 491..925 100 <- Minus
3L 18674545..18674977 58..490 100 <- Minus
3L 18675338..18675394 1..57 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:12:27 Download gff for GH02872.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18666574..18667075 926..1427 100 <- Minus
arm_3L 18667148..18667582 491..925 100 <- Minus
arm_3L 18667645..18668077 58..490 100 <- Minus
arm_3L 18668438..18668494 1..57 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:18:35 Download gff for GH02872.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18666574..18667075 926..1427 100 <- Minus
3L 18667148..18667582 491..925 100 <- Minus
3L 18667645..18668077 58..490 100 <- Minus
3L 18668438..18668494 1..57 100   Minus

GH02872.pep Sequence

Translation from 86 to 811

> GH02872.pep
MFQIDDTCPALMDYITEAVNGSWVSKQKMSLQNNDKLQISMLVQFNEEIF
EKSETRVIINTRLLTTKDSSSRGITFLTGEGECQAYLAPAQQAKRCKAAQ
TIVSNGRHTCQGELIFEDNFSEAQLNKTTWKHDIRQRMYHVEEELVAFDD
AARNCFVKEGELHIVPTIATEVTDGSFKLGDRCTAVESPEQECNIAHGIF
YSIKPPVFSAQIHTRNSFSFKFGKIVVRAKLPKGDWLFPCE*

GH02872.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10811-PA 466 GF10811-PA 57..295 1..239 1014 74.9 Plus
Dana\GF23634-PA 492 GF23634-PA 69..300 15..236 235 29.8 Plus
Dana\GF24364-PA 492 GF24364-PA 160..305 96..239 188 30.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15732-PA 432 GG15732-PA 23..261 1..239 1229 94.6 Plus
Dere\GG13669-PA 492 GG13669-PA 70..301 15..237 236 29.3 Plus
Dere\GG13671-PA 427 GG13671-PA 36..250 23..239 189 29.2 Plus
Dere\GG14358-PA 486 GG14358-PA 72..298 15..239 176 25.4 Plus
Dere\GG13670-PA 389 GG13670-PA 10..218 23..239 150 24.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14367-PA 432 GH14367-PA 23..261 1..239 905 66.5 Plus
Dgri\GH14368-PA 490 GH14368-PA 171..298 109..236 240 37.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP2-PD 410 CG4144-PD 1..239 1..239 1254 100 Plus
GNBP2-PA 432 CG4144-PA 23..261 1..239 1254 100 Plus
GNBP2-PB 461 CG4144-PB 52..290 1..239 1254 100 Plus
GNBP1-PA 492 CG6895-PA 70..303 15..239 231 28.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11311-PA 451 GI11311-PA 30..280 1..239 786 57.8 Plus
Dmoj\GI13965-PA 495 GI13965-PA 177..303 110..236 238 38.8 Plus
Dmoj\GI12940-PA 487 GI12940-PA 70..297 15..239 170 26 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22693-PA 432 GL22693-PA 23..261 1..239 1091 81.2 Plus
Dper\GL22887-PA 499 GL22887-PA 162..307 96..236 218 31.1 Plus
Dper\GL22889-PA 109 GL22889-PA 9..106 143..241 202 40.4 Plus
Dper\GL20727-PA 449 GL20727-PA 132..261 114..239 162 32.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17986-PA 432 GA17986-PA 23..261 1..239 1091 81.2 Plus
Dpse\GA23915-PA 392 GA23915-PA 43..212 64..239 269 35 Plus
Dpse\GA19936-PA 499 GA19936-PA 162..307 96..236 218 31.1 Plus
Dpse\GA18590-PA 496 GA18590-PA 76..308 15..239 190 25.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14928-PA 432 GM14928-PA 23..261 1..239 1264 97.9 Plus
Dsec\GM14984-PA 492 GM14984-PA 70..301 15..237 245 28.1 Plus
Dsec\GM25102-PA 490 GM25102-PA 76..302 15..239 171 24.6 Plus
Dsec\GM14986-PA 625 GM14986-PA 321..448 112..239 169 34.8 Plus
Dsec\GM14986-PA 625 GM14986-PA 58..286 6..240 153 22.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12334-PA 432 GD12334-PA 23..261 1..239 1268 98.3 Plus
Dsim\GNBP1-PA 492 GD14761-PA 70..301 15..237 241 28.1 Plus
Dsim\GD14763-PA 332 GD14763-PA 2..155 93..239 178 34.4 Plus
Dsim\GD14138-PA 490 GD14138-PA 76..302 15..239 171 24.6 Plus
Dsim\GD14762-PA 376 GD14762-PA 157..287 109..239 145 28.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14103-PA 432 GJ14103-PA 23..261 1..239 912 68.6 Plus
Dvir\GJ11226-PA 500 GJ11226-PA 182..308 110..236 198 35.8 Plus
Dvir\GJ13082-PA 491 GJ13082-PA 73..301 15..239 163 24.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10581-PA 432 GK10581-PA 23..261 1..239 979 72 Plus
Dwil\GK12242-PA 495 GK12242-PA 85..304 30..240 248 30 Plus
Dwil\GK16747-PA 497 GK16747-PA 71..308 15..239 147 22.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22064-PA 432 GE22064-PA 23..261 1..239 1237 95.4 Plus
Dyak\GNBP1-PA 492 GE19965-PA 70..301 15..237 242 30.6 Plus
Dyak\GE20789-PA 490 GE20789-PA 76..302 15..239 184 25.8 Plus
Dyak\GE19968-PA 464 GE19968-PA 160..287 112..239 181 37.2 Plus
Dyak\GE19966-PA 458 GE19966-PA 158..287 110..239 146 30.1 Plus

GH02872.hyp Sequence

Translation from 86 to 811

> GH02872.hyp
MFQIDDTCPALMDYITEAVNGSWVSKQKMSLQNNDKLQISMLVQFNEEIF
EKSETRVIINTRLLTTKDSSSRGITFLTGEGECQAYLAPAQQAKRCKAAQ
TIVSNGRHTCQGELIFEDNFSEAQLNKTTWKHDIRQRMYHVEEELVAFDD
AARNCFVKEGELHIVPTIATEVTDGSFKLGDRCTAVESPEQECNIAHGIF
YSIKPPVFSAQIHTRNSFSFKFGKIVVRAKLPKGDWLFPCE*

GH02872.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP2-PD 410 CG4144-PD 1..239 1..239 1254 100 Plus
GNBP2-PA 432 CG4144-PA 23..261 1..239 1254 100 Plus
GNBP2-PB 461 CG4144-PB 52..290 1..239 1254 100 Plus
GNBP1-PA 492 CG6895-PA 70..303 15..239 231 28.3 Plus