![]() | BDGP Sequence Production Resources |
Search the DGRC for GH02872
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 28 |
Well: | 72 |
Vector: | pOT2 |
Associated Gene/Transcript | GNBP2-RC |
Protein status: | GH02872.pep: wuzgold |
Preliminary Size: | 1513 |
Sequenced Size: | 1444 |
Gene | Date | Evidence |
---|---|---|
CG4144 | 2001-01-01 | Release 2 assignment |
CG4144 | 2001-09-19 | Blastp of sequenced clone |
CG4144 | 2003-01-01 | Sim4 clustering to Release 3 |
GNBP2 | 2008-04-29 | Release 5.5 accounting |
GNBP2 | 2008-08-15 | Release 5.9 accounting |
GNBP2 | 2008-12-18 | 5.12 accounting |
1444 bp (1444 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058277
> GH02872.complete CGCTAATCGGATTCTAGTTAGTACACATATTAAGAGTAATTAAAACTGCG TCATGAGATGAGCCTGGCATACAGCGGGTGTTCTACATGTTCCAAATTGA CGACACCTGCCCGGCTCTAATGGACTACATCACGGAGGCAGTGAACGGAA GTTGGGTCTCCAAGCAAAAGATGAGTCTGCAGAACAACGACAAGCTGCAG ATATCAATGCTGGTGCAGTTCAATGAGGAAATCTTCGAAAAGAGTGAAAC CAGGGTGATCATAAACACCCGGCTACTGACCACCAAAGACTCTAGCTCGC GAGGCATAACATTCCTTACAGGAGAGGGCGAGTGCCAGGCATACCTAGCT CCTGCACAGCAAGCCAAACGCTGCAAGGCCGCCCAAACGATAGTGAGCAA TGGACGCCATACTTGCCAGGGTGAACTGATCTTTGAGGACAACTTCTCGG AGGCGCAGCTGAACAAGACCACCTGGAAGCATGACATCCGACAGCGCATG TACCACGTGGAGGAGGAGCTGGTGGCCTTCGACGATGCCGCACGCAACTG CTTTGTGAAGGAAGGCGAACTCCATATCGTTCCCACTATCGCCACCGAGG TCACCGATGGCAGCTTCAAACTGGGAGATCGCTGTACGGCCGTCGAAAGT CCGGAACAGGAGTGCAACATTGCGCACGGCATCTTCTATAGCATCAAGCC TCCAGTTTTCTCCGCCCAAATTCACACCAGAAACTCTTTCAGTTTCAAAT TTGGCAAAATCGTCGTGCGCGCCAAGTTGCCCAAGGGGGATTGGCTTTTC CCCTGTGAGTAGCATACTAACTTACCTTTTCTTGTTACGAAAACGGTTTA ATTTTTAATTTATTTAAGATCTGATGCTCCAACCGGTTTCCACTTACGCG GAGACCCACTATGCCAAGCAATTGAGAATTGCATATGCCCGTGGCAATGC CAATTTGAGGACGAAACAAGGAGATGATATCTCCGGAAACCACTTATATG GCGGCGGTGTGGTTTGGCACCACGGCAATGCAGTACAGTTCCTCAAGGAC AAGATAAGCAACAGCCACTACGGGGACGACTTTCACAACTACACCATGAT CTGGCAGAGGGATAAGATTACCCTAATGGTAGACGATGAGGTTTATGGGG AGCTGTACGACGGACTGCCATTCTTCAACGAGAAGTGCTTTATTATCTTT GGCGTTACGGTGGGCGGCTTCCTGAACTTCGACGATAGTCTATTGGCCAA GGATGTCAAGCCTTATAAAAACAGGGAACCCCGGGCTGCCCTCTCATTTT GGCAGCACCGCGATGCTTGGGCCCCCACTTGGGGCAGGCACAGCGCCATG GTCATAGACTATGTTAGGGTTTATGCGGAGTAGCTGTGGCATTTGTCACC AAAATATAAATAAAGTACTTAAACATCAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
GNBP2-RC | 1428 | GNBP2-RC | 1..1428 | 1..1428 | 7140 | 100 | Plus |
GNBP2-RB | 1571 | GNBP2-RB | 207..955 | 56..804 | 3745 | 100 | Plus |
GNBP2-RA | 1447 | GNBP2-RA | 132..880 | 56..804 | 3745 | 100 | Plus |
GNBP2-RB | 1571 | GNBP2-RB | 956..1516 | 869..1429 | 2805 | 100 | Plus |
GNBP2-RA | 1447 | GNBP2-RA | 881..1441 | 869..1429 | 2805 | 100 | Plus |
GNBP2-RB | 1571 | GNBP2-RB | 33..89 | 1..57 | 285 | 100 | Plus |
GNBP2-RA | 1447 | GNBP2-RA | 20..76 | 1..57 | 285 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 18663153..18663654 | 1427..926 | 2510 | 100 | Minus |
chr3L | 24539361 | chr3L | 18663726..18664162 | 926..490 | 2170 | 99.8 | Minus |
chr3L | 24539361 | chr3L | 18664224..18664658 | 490..56 | 2160 | 99.8 | Minus |
chr3L | 24539361 | chr3L | 18665017..18665073 | 57..1 | 285 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 18673472..18673975 | 1429..926 | 2520 | 100 | Minus |
3L | 28110227 | 3L | 18674047..18674483 | 926..490 | 2185 | 100 | Minus |
3L | 28110227 | 3L | 18674545..18674979 | 490..56 | 2175 | 100 | Minus |
3L | 28110227 | 3L | 18675338..18675394 | 57..1 | 285 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 18666572..18667075 | 1429..926 | 2520 | 100 | Minus |
3L | 28103327 | 3L | 18667147..18667583 | 926..490 | 2185 | 100 | Minus |
3L | 28103327 | 3L | 18667645..18668079 | 490..56 | 2175 | 100 | Minus |
3L | 28103327 | 3L | 18668438..18668494 | 57..1 | 285 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 18663153..18663654 | 926..1427 | 100 | <- | Minus |
chr3L | 18663727..18664161 | 491..925 | 94 | <- | Minus |
chr3L | 18664224..18664656 | 58..490 | 99 | <- | Minus |
chr3L | 18665017..18665073 | 1..57 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GNBP2-RA | 785..1299 | 869..1383 | 100 | Plus | |
GNBP2-RA | 36..784 | 56..804 | 100 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GNBP2-RA | 36..784 | 56..804 | 100 | == | Plus |
GNBP2-RA | 785..1299 | 869..1383 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GNBP2-RB | 123..871 | 56..804 | 100 | == | Plus |
GNBP2-RB | 872..1386 | 869..1383 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GNBP2-RA | 36..784 | 56..804 | 100 | == | Plus |
GNBP2-RA | 785..1299 | 869..1383 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GNBP2-RB | 123..871 | 56..804 | 100 | == | Plus |
GNBP2-RB | 872..1386 | 869..1383 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GNBP2-RC | 1..1427 | 1..1427 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GNBP2-RC | 1..1427 | 1..1427 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GNBP2-RC | 1..1427 | 1..1427 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GNBP2-RC | 1..1427 | 1..1427 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GNBP2-RB | 20..76 | 1..57 | 100 | -> | Plus |
GNBP2-RB | 196..942 | 58..804 | 100 | == | Plus |
GNBP2-RB | 943..1501 | 869..1427 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18673474..18673975 | 926..1427 | 100 | <- | Minus |
3L | 18674048..18674482 | 491..925 | 100 | <- | Minus |
3L | 18674545..18674977 | 58..490 | 100 | <- | Minus |
3L | 18675338..18675394 | 1..57 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18673474..18673975 | 926..1427 | 100 | <- | Minus |
3L | 18674048..18674482 | 491..925 | 100 | <- | Minus |
3L | 18674545..18674977 | 58..490 | 100 | <- | Minus |
3L | 18675338..18675394 | 1..57 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18673474..18673975 | 926..1427 | 100 | <- | Minus |
3L | 18674048..18674482 | 491..925 | 100 | <- | Minus |
3L | 18674545..18674977 | 58..490 | 100 | <- | Minus |
3L | 18675338..18675394 | 1..57 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 18666574..18667075 | 926..1427 | 100 | <- | Minus |
arm_3L | 18667148..18667582 | 491..925 | 100 | <- | Minus |
arm_3L | 18667645..18668077 | 58..490 | 100 | <- | Minus |
arm_3L | 18668438..18668494 | 1..57 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18666574..18667075 | 926..1427 | 100 | <- | Minus |
3L | 18667148..18667582 | 491..925 | 100 | <- | Minus |
3L | 18667645..18668077 | 58..490 | 100 | <- | Minus |
3L | 18668438..18668494 | 1..57 | 100 | Minus |
Translation from 86 to 811
> GH02872.pep MFQIDDTCPALMDYITEAVNGSWVSKQKMSLQNNDKLQISMLVQFNEEIF EKSETRVIINTRLLTTKDSSSRGITFLTGEGECQAYLAPAQQAKRCKAAQ TIVSNGRHTCQGELIFEDNFSEAQLNKTTWKHDIRQRMYHVEEELVAFDD AARNCFVKEGELHIVPTIATEVTDGSFKLGDRCTAVESPEQECNIAHGIF YSIKPPVFSAQIHTRNSFSFKFGKIVVRAKLPKGDWLFPCE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10811-PA | 466 | GF10811-PA | 57..295 | 1..239 | 1014 | 74.9 | Plus |
Dana\GF23634-PA | 492 | GF23634-PA | 69..300 | 15..236 | 235 | 29.8 | Plus |
Dana\GF24364-PA | 492 | GF24364-PA | 160..305 | 96..239 | 188 | 30.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15732-PA | 432 | GG15732-PA | 23..261 | 1..239 | 1229 | 94.6 | Plus |
Dere\GG13669-PA | 492 | GG13669-PA | 70..301 | 15..237 | 236 | 29.3 | Plus |
Dere\GG13671-PA | 427 | GG13671-PA | 36..250 | 23..239 | 189 | 29.2 | Plus |
Dere\GG14358-PA | 486 | GG14358-PA | 72..298 | 15..239 | 176 | 25.4 | Plus |
Dere\GG13670-PA | 389 | GG13670-PA | 10..218 | 23..239 | 150 | 24.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14367-PA | 432 | GH14367-PA | 23..261 | 1..239 | 905 | 66.5 | Plus |
Dgri\GH14368-PA | 490 | GH14368-PA | 171..298 | 109..236 | 240 | 37.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
GNBP2-PD | 410 | CG4144-PD | 1..239 | 1..239 | 1254 | 100 | Plus |
GNBP2-PA | 432 | CG4144-PA | 23..261 | 1..239 | 1254 | 100 | Plus |
GNBP2-PB | 461 | CG4144-PB | 52..290 | 1..239 | 1254 | 100 | Plus |
GNBP1-PA | 492 | CG6895-PA | 70..303 | 15..239 | 231 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11311-PA | 451 | GI11311-PA | 30..280 | 1..239 | 786 | 57.8 | Plus |
Dmoj\GI13965-PA | 495 | GI13965-PA | 177..303 | 110..236 | 238 | 38.8 | Plus |
Dmoj\GI12940-PA | 487 | GI12940-PA | 70..297 | 15..239 | 170 | 26 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22693-PA | 432 | GL22693-PA | 23..261 | 1..239 | 1091 | 81.2 | Plus |
Dper\GL22887-PA | 499 | GL22887-PA | 162..307 | 96..236 | 218 | 31.1 | Plus |
Dper\GL22889-PA | 109 | GL22889-PA | 9..106 | 143..241 | 202 | 40.4 | Plus |
Dper\GL20727-PA | 449 | GL20727-PA | 132..261 | 114..239 | 162 | 32.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17986-PA | 432 | GA17986-PA | 23..261 | 1..239 | 1091 | 81.2 | Plus |
Dpse\GA23915-PA | 392 | GA23915-PA | 43..212 | 64..239 | 269 | 35 | Plus |
Dpse\GA19936-PA | 499 | GA19936-PA | 162..307 | 96..236 | 218 | 31.1 | Plus |
Dpse\GA18590-PA | 496 | GA18590-PA | 76..308 | 15..239 | 190 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14928-PA | 432 | GM14928-PA | 23..261 | 1..239 | 1264 | 97.9 | Plus |
Dsec\GM14984-PA | 492 | GM14984-PA | 70..301 | 15..237 | 245 | 28.1 | Plus |
Dsec\GM25102-PA | 490 | GM25102-PA | 76..302 | 15..239 | 171 | 24.6 | Plus |
Dsec\GM14986-PA | 625 | GM14986-PA | 321..448 | 112..239 | 169 | 34.8 | Plus |
Dsec\GM14986-PA | 625 | GM14986-PA | 58..286 | 6..240 | 153 | 22.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12334-PA | 432 | GD12334-PA | 23..261 | 1..239 | 1268 | 98.3 | Plus |
Dsim\GNBP1-PA | 492 | GD14761-PA | 70..301 | 15..237 | 241 | 28.1 | Plus |
Dsim\GD14763-PA | 332 | GD14763-PA | 2..155 | 93..239 | 178 | 34.4 | Plus |
Dsim\GD14138-PA | 490 | GD14138-PA | 76..302 | 15..239 | 171 | 24.6 | Plus |
Dsim\GD14762-PA | 376 | GD14762-PA | 157..287 | 109..239 | 145 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14103-PA | 432 | GJ14103-PA | 23..261 | 1..239 | 912 | 68.6 | Plus |
Dvir\GJ11226-PA | 500 | GJ11226-PA | 182..308 | 110..236 | 198 | 35.8 | Plus |
Dvir\GJ13082-PA | 491 | GJ13082-PA | 73..301 | 15..239 | 163 | 24.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10581-PA | 432 | GK10581-PA | 23..261 | 1..239 | 979 | 72 | Plus |
Dwil\GK12242-PA | 495 | GK12242-PA | 85..304 | 30..240 | 248 | 30 | Plus |
Dwil\GK16747-PA | 497 | GK16747-PA | 71..308 | 15..239 | 147 | 22.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22064-PA | 432 | GE22064-PA | 23..261 | 1..239 | 1237 | 95.4 | Plus |
Dyak\GNBP1-PA | 492 | GE19965-PA | 70..301 | 15..237 | 242 | 30.6 | Plus |
Dyak\GE20789-PA | 490 | GE20789-PA | 76..302 | 15..239 | 184 | 25.8 | Plus |
Dyak\GE19968-PA | 464 | GE19968-PA | 160..287 | 112..239 | 181 | 37.2 | Plus |
Dyak\GE19966-PA | 458 | GE19966-PA | 158..287 | 110..239 | 146 | 30.1 | Plus |
Translation from 86 to 811
> GH02872.hyp MFQIDDTCPALMDYITEAVNGSWVSKQKMSLQNNDKLQISMLVQFNEEIF EKSETRVIINTRLLTTKDSSSRGITFLTGEGECQAYLAPAQQAKRCKAAQ TIVSNGRHTCQGELIFEDNFSEAQLNKTTWKHDIRQRMYHVEEELVAFDD AARNCFVKEGELHIVPTIATEVTDGSFKLGDRCTAVESPEQECNIAHGIF YSIKPPVFSAQIHTRNSFSFKFGKIVVRAKLPKGDWLFPCE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
GNBP2-PD | 410 | CG4144-PD | 1..239 | 1..239 | 1254 | 100 | Plus |
GNBP2-PA | 432 | CG4144-PA | 23..261 | 1..239 | 1254 | 100 | Plus |
GNBP2-PB | 461 | CG4144-PB | 52..290 | 1..239 | 1254 | 100 | Plus |
GNBP1-PA | 492 | CG6895-PA | 70..303 | 15..239 | 231 | 28.3 | Plus |