BDGP Sequence Production Resources |
Search the DGRC for GH02880
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 28 |
Well: | 80 |
Vector: | pOT2 |
Associated Gene/Transcript | Pgam5-RA |
Protein status: | GH02880.pep: gold |
Preliminary Size: | 1257 |
Sequenced Size: | 1104 |
Gene | Date | Evidence |
---|---|---|
CG14816 | 2001-01-01 | Release 2 assignment |
CG14816 | 2003-01-01 | Sim4 clustering to Release 3 |
CG14816 | 2003-01-13 | Blastp of sequenced clone |
CG14816 | 2008-04-29 | Release 5.5 accounting |
CG14816 | 2008-08-15 | Release 5.9 accounting |
CG14816 | 2008-12-18 | 5.12 accounting |
1104 bp (1104 high quality bases) assembled on 2003-01-13
GenBank Submission: AY060608
> GH02880.complete CGGCACGAGCCTAACGATGCGAAAGTTGACTAGCTTCGTGTGCGGCACAG GAGCCGGACTGGCGGCTTACTACCTACAGCGGCTGCGGGACCCGCAGACG GTCGTGCAGAACTCGTGGACGCACAGTGATAAGCCGGTGGATCCGTGGGC CCTTTGGGACACCAACTGGGATTGCCGGGAGCCACGGGCCCTCGTGCGTC CACTGCGAAACAGCCAGCCGGAGGAGGAGAACCGCTACAACGCGGAGCTT GAGAAGGCGAAGGCCAAGAAGGCGCGCCACATTATCCTAGTGCGGCATGG CGAGTATCTGGACGTGGGTGACTCGGATGACACGCATCATCTCACGGAGC GCGGCCGCAAGCAGGCGGAGTTTACTGGGAAACGGCTCTGCGAGCTGGGC ATCAAGTGGGACAAGGTAGTAGCCTCCACAATGGTGCGGGCCCAGGAGAC TTCCGATATTATTCTCAAGCAGATCGATTTCGAAAAAGAGAAAGTGGTGA ACTGTGCCTTCCTGCGTGAAGGAGCGCCTATTCCGCCCCAGCCGCCAGTC GGCCACTGGAAGCCGGAGGCATCTCAGTTCCTTCGCGACGGATCGCGCAT AGAGGCCGGCTTTCGCCGATACTTCCACCGCGCCTATCCCGACCAAGAGA AGGAGAGCTATACCCTGATCGTGGGACACGGCAACGTGATCCGCTACTTT GTCTGCCGAGCCCTGCAGTTCCCCGCCGAGGGTTGGCTACGGATTAACAT TAATCACGCTTCCATCACCTGGCTGACCATCAGTCCATCCGGCAACGTGT CCATCAAGTACCTGGGCGACTCCGGCTTTATGCCCGCCGAGCTGCTTACC AATCGCATACCGCGCGACGTCAAAAACGTGGTTTAGCCGTCTGTTTATAG AACTGCCCAAAGGAGAAGCAATCATAATGTATTTATTTCCAACACTTTAA CTGAGACCTTGAGCACAGATCGCGAGACTGTGTAAACCACCATGTACATT TTGCCGCACCGTAACGTATATCTCTTAAGGAGGAATCATTGAATCTTCCG ACTGAAATAATAAAGATTTTATAGAATGCCTAAAAAAAAAAAAAAAAAAA AAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 1766243..1766749 | 575..1081 | 100 | <- | Minus |
chrX | 1766816..1767380 | 10..574 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14816-RA | 1..870 | 17..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pgam5-RA | 1..870 | 17..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pgam5-RA | 1..870 | 17..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14816-RA | 1..870 | 17..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pgam5-RA | 1..870 | 17..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14816-RA | 1..1070 | 10..1079 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pgam5-RA | 1..1070 | 10..1079 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pgam5-RA | 29..1100 | 10..1081 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14816-RA | 1..1070 | 10..1079 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pgam5-RA | 29..1100 | 10..1081 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1872400..1872906 | 575..1081 | 100 | <- | Minus |
X | 1872973..1873537 | 10..574 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1872400..1872906 | 575..1081 | 100 | <- | Minus |
X | 1872973..1873537 | 10..574 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1872400..1872906 | 575..1081 | 100 | <- | Minus |
X | 1872973..1873537 | 10..574 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 1766433..1766939 | 575..1081 | 100 | <- | Minus |
arm_X | 1767006..1767570 | 10..574 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1880498..1881004 | 575..1081 | 100 | <- | Minus |
X | 1881071..1881635 | 10..574 | 100 | Minus |
Translation from 10 to 885
> GH02880.hyp LTMRKLTSFVCGTGAGLAAYYLQRLRDPQTVVQNSWTHSDKPVDPWALWD TNWDCREPRALVRPLRNSQPEEENRYNAELEKAKAKKARHIILVRHGEYL DVGDSDDTHHLTERGRKQAEFTGKRLCELGIKWDKVVASTMVRAQETSDI ILKQIDFEKEKVVNCAFLREGAPIPPQPPVGHWKPEASQFLRDGSRIEAG FRRYFHRAYPDQEKESYTLIVGHGNVIRYFVCRALQFPAEGWLRININHA SITWLTISPSGNVSIKYLGDSGFMPAELLTNRIPRDVKNVV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pgam5-PA | 289 | CG14816-PA | 1..289 | 3..291 | 1553 | 100 | Plus |
Pgam5-PB | 288 | CG14816-PB | 1..288 | 3..291 | 1536 | 99.7 | Plus |
Pgam5-2-PA | 280 | CG15874-PA | 8..277 | 4..289 | 573 | 44.2 | Plus |
Translation from 16 to 885
> GH02880.pep MRKLTSFVCGTGAGLAAYYLQRLRDPQTVVQNSWTHSDKPVDPWALWDTN WDCREPRALVRPLRNSQPEEENRYNAELEKAKAKKARHIILVRHGEYLDV GDSDDTHHLTERGRKQAEFTGKRLCELGIKWDKVVASTMVRAQETSDIIL KQIDFEKEKVVNCAFLREGAPIPPQPPVGHWKPEASQFLRDGSRIEAGFR RYFHRAYPDQEKESYTLIVGHGNVIRYFVCRALQFPAEGWLRININHASI TWLTISPSGNVSIKYLGDSGFMPAELLTNRIPRDVKNVV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21073-PA | 289 | GF21073-PA | 1..289 | 1..289 | 1345 | 83.4 | Plus |
Dana\GF11250-PA | 287 | GF11250-PA | 72..273 | 79..282 | 562 | 54.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12675-PA | 289 | GG12675-PA | 1..289 | 1..289 | 1506 | 96.2 | Plus |
Dere\GG19931-PA | 280 | GG19931-PA | 8..276 | 2..286 | 578 | 44.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24297-PA | 289 | GH24297-PA | 1..289 | 1..289 | 1264 | 77.9 | Plus |
Dgri\GH20896-PA | 266 | GH20896-PA | 76..266 | 87..279 | 562 | 57.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pgam5-PA | 289 | CG14816-PA | 1..289 | 1..289 | 1553 | 100 | Plus |
Pgam5-PB | 288 | CG14816-PB | 1..288 | 1..289 | 1536 | 99.7 | Plus |
Pgam5-2-PA | 280 | CG15874-PA | 8..277 | 2..287 | 573 | 44.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16420-PA | 289 | GI16420-PA | 1..289 | 1..289 | 1258 | 76.8 | Plus |
Dmoj\GI18906-PA | 278 | GI18906-PA | 48..275 | 47..284 | 577 | 51 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20215-PA | 289 | GL20215-PA | 1..289 | 1..289 | 1267 | 77.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13269-PA | 289 | GA13269-PA | 1..289 | 1..289 | 1269 | 77.9 | Plus |
Dpse\GA13996-PA | 267 | GA13996-PA | 40..251 | 47..275 | 564 | 50.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18947-PA | 289 | GM18947-PA | 1..289 | 1..289 | 1548 | 99 | Plus |
Dsec\GM11831-PA | 135 | GM11831-PA | 8..132 | 2..143 | 186 | 36.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16411-PA | 289 | GD16411-PA | 1..289 | 1..289 | 1547 | 99 | Plus |
Dsim\GD24953-PA | 153 | GD24953-PA | 1..151 | 139..288 | 414 | 53 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17041-PA | 289 | GJ17041-PA | 1..289 | 1..289 | 1288 | 79.2 | Plus |
Dvir\GJ20730-PA | 274 | GJ20730-PA | 10..273 | 4..286 | 601 | 47.2 | Plus |