Clone GH02974 Report

Search the DGRC for GH02974

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:29
Well:74
Vector:pOT2
Associated Gene/Transcriptamx-RA
Protein status:GH02974.pep: gold
Preliminary Size:1424
Sequenced Size:1440

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12127 2000-02-14 Blastp of sequenced clone
CG2194 2001-01-01 Release 2 assignment
CG9022 2001-01-01 Release 2 assignment
CG9034 2001-01-01 Release 2 assignment
CG9060 2001-01-01 Release 2 assignment
CG12664 2001-01-01 Release 2 assignment
CG12666 2001-01-01 Release 2 assignment
CG8971 2001-01-01 Release 2 assignment
CG8989 2001-01-01 Release 2 assignment
CG12115 2001-01-01 Release 2 assignment
CG12118 2001-01-01 Release 2 assignment
CG12119 2001-01-01 Release 2 assignment
CG12120 2001-01-01 Release 2 assignment
CG12121 2001-01-01 Release 2 assignment
CG12122 2001-01-01 Release 2 assignment
CG12124 2001-01-01 Release 2 assignment
CG12127 2001-01-01 Release 2 assignment
CG12127 2003-01-01 Sim4 clustering to Release 3
amx 2008-04-29 Release 5.5 accounting
amx 2008-08-15 Release 5.9 accounting
amx 2008-12-18 5.12 accounting

Clone Sequence Records

GH02974.complete Sequence

1440 bp (1440 high quality bases) assembled on 2000-02-14

GenBank Submission: AF181623

> GH02974.complete
CCAATGGTCACAACTTAAATGGAAAGGATATTAGGATTAGATATTACTAA
TTTGTTACGATGAGGGGAGAGGTATACTTATCTGTTTAGCCAATTTAATT
GAGCCAAAACATATCTATAAACTATTCGATACGCTTTTTAAAGAAATTTC
TCCTGAGCATTCGCGGTTGATATTTTCATGCCACGCGTATACGGTCACAC
TCTCCCACCCCACTCATTTTCTTAAAGGGAAAAACAATAACATTTCCGGC
GTATTCCCCGCTCTATCTGACCAAAATGAGGCTCCAACGACAGTGCATTG
TGGTCAACATGCGATCGGCCATTGTCCTGATCATGATCTTCGTGCTGACG
GGGATCAGGAACAGCGAAACGGCCAGCGGTGGCAACCAGATGGACTTATC
GGACTCAAAAGGCGATCACAAGGATAACAGCAATGCGAGCAATGGCAATG
GAAATGCCAACGATAACGAGGTGTATGTGCCGCCCCTGGTGTCCAGCATG
GTGGCCAAGAGTGGAGGAGGTGCCGGTGGACTCCTGGACAACATAACCGC
CTACAGCAGCAGCAGCAGTAGCAGTAGCAGCAATGGGAACAACAACATGC
TATGCCCGTACGATAAGGAAACGCCCTGTGATCGCCTGCAGTTTCCCTGC
ATCCGTTGCAACTACAATCATGGATGCATCTACGGCCGGGACTTGAATGT
AACCTGCGAGGTGATCAACAATGTCCAGTGCCTGGGCGAACGGAGTTTCC
AGCGACAAATGAATTGCCGATACTGCTACCAAACGGAAATGTGGCAACAG
AGCTGTGGCCAGCGCTCCAGTTGCAACTCGGCGACGGATAAGCTATTCCG
TACCAACTGCACCGTGCACCATGATGTGCTCTGCCTCGGCAATCGATCCT
TTACCCGCAACCTGCGATGCAACTGGACGCAGGGCTATCGGTGGAGCACA
GCCCTGCTGATTAGCCTCACGCTAGGGGGCTTTGGAGCCGATCGATTCTA
CTTGGGCCACTGGCAGGAAGGGATTGGAAAGCTGTTCAGCTTTGGCGGCC
TCGGCGTCTGGACCATCATCGATGTCCTGCTCATCTCGATGCATTATTTG
GGGCCAGCGGATGGCTCACTTTACATATAGTTTAGTTTTACAGGGGTTAA
TAGGTCATAAGCTAACTTTTCCATTACAGTGTACATAATAACGAATGCAA
ATATGCAACCATTAGGAATAGCAAGATCTTCTCAAAAACGTGTACATAAT
TAATTAGGAAATGTATTTTATTAATAATGCCAAAAGTTCTTTTTTGTATC
TTTTATCTAGCACAATTCTTTGATCGTATCAATAAATAAGTGAAAGAGAA
AATATAACCATCTCTTTCTCGTTCCTGTAAGATCAGACAAATTTGTAAAA
ATAAATGGTTTGTTTCATTCAGAAAAAAAAAAAAAAAAAA

GH02974.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
amx-RA 1422 amx-RA 1..1422 1..1422 7110 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9137733..9139154 1422..1 7020 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:28:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9245913..9247336 1424..1 7120 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9254011..9255434 1424..1 7120 100 Minus
Blast to na_te.dros performed 2019-03-16 06:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2418..2477 539..598 120 66.7 Plus

GH02974.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:13:41 Download gff for GH02974.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9137733..9139154 1..1422 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:09:21 Download gff for GH02974.complete
Subject Subject Range Query Range Percent Splice Strand
amx-RA 1..855 276..1130 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:33:03 Download gff for GH02974.complete
Subject Subject Range Query Range Percent Splice Strand
amx-RA 1..855 276..1130 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:25:50 Download gff for GH02974.complete
Subject Subject Range Query Range Percent Splice Strand
amx-RA 1..855 276..1130 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:07:30 Download gff for GH02974.complete
Subject Subject Range Query Range Percent Splice Strand
amx-RA 1..855 276..1130 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:18:16 Download gff for GH02974.complete
Subject Subject Range Query Range Percent Splice Strand
amx-RA 1..855 276..1130 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:35:05 Download gff for GH02974.complete
Subject Subject Range Query Range Percent Splice Strand
amx-RA 1..1422 1..1422 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:33:02 Download gff for GH02974.complete
Subject Subject Range Query Range Percent Splice Strand
amx-RA 1..1422 1..1422 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:50 Download gff for GH02974.complete
Subject Subject Range Query Range Percent Splice Strand
amx-RA 1..1422 1..1422 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:07:30 Download gff for GH02974.complete
Subject Subject Range Query Range Percent Splice Strand
amx-RA 1..1422 1..1422 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:18:16 Download gff for GH02974.complete
Subject Subject Range Query Range Percent Splice Strand
amx-RA 1..1422 1..1422 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:13:41 Download gff for GH02974.complete
Subject Subject Range Query Range Percent Splice Strand
X 9245915..9247336 1..1422 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:13:41 Download gff for GH02974.complete
Subject Subject Range Query Range Percent Splice Strand
X 9245915..9247336 1..1422 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:13:41 Download gff for GH02974.complete
Subject Subject Range Query Range Percent Splice Strand
X 9245915..9247336 1..1422 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:50 Download gff for GH02974.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9139948..9141369 1..1422 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:45:04 Download gff for GH02974.complete
Subject Subject Range Query Range Percent Splice Strand
X 9254013..9255434 1..1422 100   Minus

GH02974.pep Sequence

Translation from 275 to 1129

> GH02974.pep
MRLQRQCIVVNMRSAIVLIMIFVLTGIRNSETASGGNQMDLSDSKGDHKD
NSNASNGNGNANDNEVYVPPLVSSMVAKSGGGAGGLLDNITAYSSSSSSS
SSNGNNNMLCPYDKETPCDRLQFPCIRCNYNHGCIYGRDLNVTCEVINNV
QCLGERSFQRQMNCRYCYQTEMWQQSCGQRSSCNSATDKLFRTNCTVHHD
VLCLGNRSFTRNLRCNWTQGYRWSTALLISLTLGGFGADRFYLGHWQEGI
GKLFSFGGLGVWTIIDVLLISMHYLGPADGSLYI*

GH02974.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19095-PA 282 GF19095-PA 1..282 1..284 1146 78.9 Plus
Dana\GF12097-PA 183 GF12097-PA 24..158 149..284 214 36.2 Plus
Dana\GF15960-PA 205 GF15960-PA 109..199 192..281 188 44 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18987-PA 285 GG18987-PA 1..285 1..284 1481 98.6 Plus
Dere\GG20778-PA 178 GG20778-PA 59..153 192..284 214 44.2 Plus
Dere\GG17813-PA 223 GG17813-PA 130..217 195..281 181 45.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12700-PA 275 GH12700-PA 1..275 1..284 1038 72.5 Plus
Dgri\GH21182-PA 182 GH21182-PA 62..153 195..284 226 47.8 Plus
Dgri\GH17747-PA 216 GH17747-PA 120..210 192..281 186 44 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
amx-PB 284 CG12127-PB 1..284 1..284 1543 100 Plus
amx-PA 284 CG12127-PA 1..284 1..284 1543 100 Plus
CG10795-PA 178 CG10795-PA 59..153 192..284 218 44.2 Plus
CG11103-PB 172 CG11103-PB 79..166 195..281 184 45.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14465-PA 268 GI14465-PA 1..268 1..284 1047 73.2 Plus
Dmoj\GI20469-PA 183 GI20469-PA 60..154 192..284 220 45.3 Plus
Dmoj\GI15502-PA 218 GI15502-PA 122..212 192..281 185 42.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18280-PA 271 GL18280-PA 1..271 1..284 1118 79.6 Plus
Dper\GL11844-PA 179 GL11844-PA 60..154 192..284 212 44.2 Plus
Dper\GL19845-PA 219 GL19845-PA 123..213 192..281 187 42.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11421-PA 282 GA11421-PA 1..249 1..262 971 75.6 Plus
Dpse\GA10564-PA 179 GA10564-PA 60..154 192..284 212 44.2 Plus
Dpse\GA10761-PA 219 GA10761-PA 123..213 192..281 187 42.9 Plus
Dpse\GA26125-PA 78 GA26125-PA 1..58 12..71 175 80 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22327-PA 286 GM22327-PA 1..286 1..284 1490 98.6 Plus
Dsec\GM15723-PA 178 GM15723-PA 59..153 192..284 214 44.2 Plus
Dsec\GM17641-PA 224 GM17641-PA 131..218 195..281 181 45.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24561-PA 285 GD24561-PA 1..285 1..284 1470 97.9 Plus
Dsim\GD25200-PA 178 GD25200-PA 59..153 192..284 214 44.2 Plus
Dsim\GD17144-PA 224 GD17144-PA 131..218 195..281 181 45.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18800-PA 268 GJ18800-PA 1..268 1..284 1075 73.2 Plus
Dvir\GJ22319-PA 182 GJ22319-PA 59..153 192..284 222 45.3 Plus
Dvir\GJ19261-PA 220 GJ19261-PA 124..214 192..281 182 42.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25793-PA 269 GK25793-PA 1..269 1..284 1031 73.9 Plus
Dwil\GK10083-PA 201 GK10083-PA 1..198 1..213 595 59.2 Plus
Dwil\GK20744-PA 179 GK20744-PA 56..154 188..284 214 43.4 Plus
Dwil\GK25073-PA 218 GK25073-PA 122..212 192..281 185 42.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15460-PA 283 GE15460-PA 1..283 1..284 1470 98.2 Plus
Dyak\GE13716-PA 178 GE13716-PA 59..153 180..284 213 43.8 Plus
Dyak\GE17109-PA 224 GE17109-PA 131..218 195..281 182 45.5 Plus

GH02974.hyp Sequence

Translation from 275 to 1129

> GH02974.hyp
MRLQRQCIVVNMRSAIVLIMIFVLTGIRNSETASGGNQMDLSDSKGDHKD
NSNASNGNGNANDNEVYVPPLVSSMVAKSGGGAGGLLDNITAYSSSSSSS
SSNGNNNMLCPYDKETPCDRLQFPCIRCNYNHGCIYGRDLNVTCEVINNV
QCLGERSFQRQMNCRYCYQTEMWQQSCGQRSSCNSATDKLFRTNCTVHHD
VLCLGNRSFTRNLRCNWTQGYRWSTALLISLTLGGFGADRFYLGHWQEGI
GKLFSFGGLGVWTIIDVLLISMHYLGPADGSLYI*

GH02974.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
amx-PB 284 CG12127-PB 1..284 1..284 1543 100 Plus
amx-PA 284 CG12127-PA 1..284 1..284 1543 100 Plus
CG10795-PA 178 CG10795-PA 59..153 192..284 218 44.2 Plus
CG11103-PB 172 CG11103-PB 79..166 195..281 184 45.5 Plus