Clone GH02976 Report

Search the DGRC for GH02976

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:29
Well:76
Vector:pOT2
Associated Gene/Transcriptobst-B-RA
Protein status:GH02976.pep: gold
Preliminary Size:1181
Sequenced Size:1161

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4778 2000-02-14 Blastp of sequenced clone
CG4778 2001-01-01 Release 2 assignment
CG4778 2003-01-01 Sim4 clustering to Release 3
obst-B 2008-04-29 Release 5.5 accounting
obst-B 2008-08-15 Release 5.9 accounting
obst-B 2008-12-18 5.12 accounting

Clone Sequence Records

GH02976.complete Sequence

1161 bp (1161 high quality bases) assembled on 2000-02-14

GenBank Submission: AF145612

> GH02976.complete
CGAGACGTAGACGCGTGCGCACGTACGAGTTTGGTTTATGTCGGCTAACG
AAATGGCGCTTGTGAAAATCTGCATATTTGCTTTGGCTTTGGCCGTGGGT
CTGACCGCAACCAAGGCGCAGGAGTCGAGAGGCGGTTTCCGTGGCAGTAA
CAGCCAGTTTCGCGTGGGTCCTGGCCATCCGCCCTCGCAGCGCCACCTGC
CGCCCCGAAACCGTGATCCCGTCCAGGAGGCATCGGTGGTGCCAAAGAGC
AAACAGACGGCGGCGGAGAAGGAGTACGAGCCCACCGAGGAGTGCCCGGA
GCCCAATGGCTTCTATCCGGACAGCAAGCAGTGCGACAAGTACTACGCCT
GCCTGGATGGTGTGCCCACGGAGCGACTGTGCGCCGATGGCATGGTCTTC
AATGACTACTCACCCATCGAGGAGAAGTGCGATCTGCCCTACAACATTGA
CTGCATGAAGCGGAGCAAGCTACAAACACCTCAGCCATCGCTTCACTGTC
CCCGGAAGAATGGATACTTTGGCCACGAGAAGCCAGGCATCTGCGATAAG
TTCTACTTTTGCGTGGATGGTCAGTTCAATATGATTACCTGCCCGGCTGG
ACTGGTCTTCAATCCCAAGACGGGCATATGTGGCTGGCCTGACCAAGTGG
GCGTCACTGGCTGCAAGTCGGAGGATGTCTTCGACTTTGAGTGCCCCAAG
GTGAACGAGAGCATCGCAGTGACACATCCCCGCTACGCCGATCCCAACGA
TTGCCAGTTCTTCTACGTCTGCGTCAACGGAGATCTGCCCAGGCGAAACG
GATGCAAACTGGGCCAGGTCTTCGACGAGGAGAAGGAGACCTGCGACTGG
GCACGCAAGGTGCCAGATTGTGCCGACTGGTACAAGGATCGTCTGACCGA
CAAGGAGCTGGATGAGCTGGAGAACCCGAAGCCCAAGACCACGACCACCA
AGAGGCCGCCACGTGTCCGCGGTCAGTCGAGGCGCAAGCCCCAGCCGAAG
CGAGTGGAACCGGAGCAGGTTAAGGAGGAGGAGGAGGAGGAGGAGGAGTA
GGCCTGATCCCCCCGACTGTGTTAGTCTTAAGTGAACCCCCCGCTGATTG
TCGCCATTAAAAAGCGTGCAGAAGGTGTACCTAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

GH02976.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
obst-B-RA 1507 obst-B-RA 118..1251 1..1134 5670 100 Plus
obst-B.a 1911 obst-B.a 118..1251 1..1134 5670 100 Plus
nc_2229.a 113 nc_2229.a 44..113 98..167 350 100 Plus
nc_2229.a 113 nc_2229.a 12..46 1..35 175 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10037184..10037580 474..870 1910 98.7 Plus
chr2L 23010047 chr2L 10037658..10037920 870..1132 1315 100 Plus
chr2L 23010047 chr2L 10035785..10036042 98..355 1260 99.2 Plus
chr2L 23010047 chr2L 10036129..10036247 355..473 580 99.2 Plus
chr2L 23010047 chr2L 10031875..10031942 33..100 340 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:28:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10038218..10038614 474..870 1985 100 Plus
2L 23513712 2L 10038692..10038956 870..1134 1325 100 Plus
2L 23513712 2L 10036817..10037074 98..355 1290 100 Plus
2L 23513712 2L 10037161..10037279 355..473 595 100 Plus
2L 23513712 2L 10032888..10032955 33..100 340 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10038218..10038614 474..870 1985 100 Plus
2L 23513712 2L 10038692..10038956 870..1134 1325 100 Plus
2L 23513712 2L 10036817..10037074 98..355 1290 100 Plus
2L 23513712 2L 10037161..10037279 355..473 595 100 Plus
2L 23513712 2L 10032888..10032955 33..100 340 100 Plus
2L 23513712 2L 10032707..10032741 1..35 175 100 Plus
Blast to na_te.dros performed 2019-03-16 19:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 819..911 750..845 130 65.3 Plus

GH02976.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:16:35 Download gff for GH02976.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10031694..10031726 1..33 100 -> Plus
chr2L 10031876..10031940 34..98 100 -> Plus
chr2L 10035786..10036041 99..354 99 -> Plus
chr2L 10036129..10036247 355..473 99 -> Plus
chr2L 10037184..10037580 474..870 98 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:09:22 Download gff for GH02976.complete
Subject Subject Range Query Range Percent Splice Strand
obst-B-RA 1..1014 38..1051 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:33:06 Download gff for GH02976.complete
Subject Subject Range Query Range Percent Splice Strand
obst-B-RA 1..1014 38..1051 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:34:35 Download gff for GH02976.complete
Subject Subject Range Query Range Percent Splice Strand
obst-B-RA 1..1014 38..1051 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:07:36 Download gff for GH02976.complete
Subject Subject Range Query Range Percent Splice Strand
obst-B-RA 1..1014 38..1051 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:25:03 Download gff for GH02976.complete
Subject Subject Range Query Range Percent Splice Strand
obst-B-RA 1..1014 38..1051 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:35:10 Download gff for GH02976.complete
Subject Subject Range Query Range Percent Splice Strand
obst-B-RA 14..1145 1..1132 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:33:06 Download gff for GH02976.complete
Subject Subject Range Query Range Percent Splice Strand
obst-B-RA 14..1145 1..1132 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:35 Download gff for GH02976.complete
Subject Subject Range Query Range Percent Splice Strand
obst-B-RA 18..1149 1..1132 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:07:37 Download gff for GH02976.complete
Subject Subject Range Query Range Percent Splice Strand
obst-B-RA 14..1145 1..1132 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:25:03 Download gff for GH02976.complete
Subject Subject Range Query Range Percent Splice Strand
obst-B-RA 18..1149 1..1132 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:16:35 Download gff for GH02976.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10038693..10038954 871..1132 100   Plus
2L 10038218..10038614 474..870 100 -> Plus
2L 10032707..10032739 1..33 100 -> Plus
2L 10032889..10032953 34..98 100 -> Plus
2L 10036818..10037073 99..354 100 -> Plus
2L 10037161..10037279 355..473 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:16:35 Download gff for GH02976.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10038693..10038954 871..1132 100   Plus
2L 10038218..10038614 474..870 100 -> Plus
2L 10032707..10032739 1..33 100 -> Plus
2L 10032889..10032953 34..98 100 -> Plus
2L 10036818..10037073 99..354 100 -> Plus
2L 10037161..10037279 355..473 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:16:35 Download gff for GH02976.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10038693..10038954 871..1132 100   Plus
2L 10038218..10038614 474..870 100 -> Plus
2L 10032707..10032739 1..33 100 -> Plus
2L 10032889..10032953 34..98 100 -> Plus
2L 10036818..10037073 99..354 100 -> Plus
2L 10037161..10037279 355..473 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:35 Download gff for GH02976.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10037161..10037279 355..473 100 -> Plus
arm_2L 10032707..10032739 1..33 100 -> Plus
arm_2L 10032889..10032953 34..98 100 -> Plus
arm_2L 10036818..10037073 99..354 100 -> Plus
arm_2L 10038218..10038614 474..870 100 -> Plus
arm_2L 10038693..10038954 871..1132 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:45:09 Download gff for GH02976.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10036818..10037073 99..354 100 -> Plus
2L 10037161..10037279 355..473 100 -> Plus
2L 10038218..10038614 474..870 100 -> Plus
2L 10038693..10038954 871..1132 100   Plus
2L 10032707..10032739 1..33 100 -> Plus
2L 10032889..10032953 34..98 100 -> Plus

GH02976.pep Sequence

Translation from 37 to 1050

> GH02976.pep
MSANEMALVKICIFALALAVGLTATKAQESRGGFRGSNSQFRVGPGHPPS
QRHLPPRNRDPVQEASVVPKSKQTAAEKEYEPTEECPEPNGFYPDSKQCD
KYYACLDGVPTERLCADGMVFNDYSPIEEKCDLPYNIDCMKRSKLQTPQP
SLHCPRKNGYFGHEKPGICDKFYFCVDGQFNMITCPAGLVFNPKTGICGW
PDQVGVTGCKSEDVFDFECPKVNESIAVTHPRYADPNDCQFFYVCVNGDL
PRRNGCKLGQVFDEEKETCDWARKVPDCADWYKDRLTDKELDELENPKPK
TTTTKRPPRVRGQSRRKPQPKRVEPEQVKEEEEEEEE*

GH02976.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15739-PA 322 GF15739-PA 1..313 6..323 1511 88.4 Plus
Dana\GF20239-PA 239 GF20239-PA 26..233 85..284 488 46.2 Plus
Dana\GF18629-PA 257 GF18629-PA 22..255 85..314 319 34.3 Plus
Dana\GF14304-PA 237 GF14304-PA 13..220 85..285 312 33.2 Plus
Dana\GF14303-PA 242 GF14303-PA 26..228 86..285 308 34.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10079-PA 333 GG10079-PA 1..333 1..333 1755 98.5 Plus
Dere\GG19275-PA 237 GG19275-PA 24..231 85..284 496 46.6 Plus
Dere\GG10600-PA 258 GG10600-PA 22..224 85..284 315 36.1 Plus
Dere\GG24283-PA 250 GG24283-PA 24..232 85..285 310 33 Plus
Dere\GG19276-PA 230 GG19276-PA 5..216 63..270 222 30.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11070-PA 313 GH11070-PA 1..306 6..324 1363 79.9 Plus
Dgri\GH12617-PA 235 GH12617-PA 23..230 85..284 501 47.6 Plus
Dgri\GH14287-PA 255 GH14287-PA 22..224 85..284 315 36.1 Plus
Dgri\GH10690-PA 237 GH10690-PA 8..220 80..285 307 32.4 Plus
Dgri\GH10689-PA 249 GH10689-PA 25..222 86..280 300 34.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
obst-B-PA 337 CG4778-PA 1..337 1..337 1879 100 Plus
obst-A-PB 237 CG17052-PB 24..231 85..284 548 46.6 Plus
obst-A-PA 237 CG17052-PA 24..231 85..284 548 46.6 Plus
Gasp-PB 235 CG10287-PB 22..224 85..284 351 36.1 Plus
Gasp-PA 258 CG10287-PA 22..224 85..284 351 36.1 Plus
obst-E-PA 242 CG11142-PA 26..228 86..285 339 34.3 Plus
obst-E-PB 249 CG11142-PB 24..232 85..285 337 33.5 Plus
Peritrophin-A-PB 230 CG17058-PB 27..216 85..270 243 32 Plus
Peritrophin-A-PA 230 CG17058-PA 27..216 85..270 243 32 Plus
CG10725-PB 269 CG10725-PB 95..261 97..269 216 29.6 Plus
CG10725-PB 269 CG10725-PB 145..268 87..205 189 31.8 Plus
CG7248-PA 796 CG7248-PA 67..228 90..245 188 32 Plus
teq-PC 563 CG4821-PC 59..259 80..269 172 26.4 Plus
teq-PF 2379 CG4821-PF 59..259 80..269 172 26.4 Plus
teq-PG 2792 CG4821-PG 59..259 80..269 172 26.4 Plus
Peritrophin-A-PC 157 CG17058-PC 27..147 85..204 169 29.3 Plus
CG10154-PB 316 CG10154-PB 192..316 87..206 163 30.2 Plus
CG10154-PA 316 CG10154-PA 192..316 87..206 163 30.2 Plus
Muc68D-PB 1514 CG6004-PB 1293..1505 64..269 161 27.3 Plus
obst-E-PB 249 CG11142-PB 69..222 64..204 151 28 Plus
CG10140-PA 297 CG10140-PA 61..248 90..308 151 25.8 Plus
CG10140-PA 297 CG10140-PA 178..297 92..206 151 30.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17587-PA 316 GI17587-PA 1..305 6..323 1429 83 Plus
Dmoj\GI11032-PA 247 GI11032-PA 24..247 85..303 507 44.5 Plus
Dmoj\GI11221-PA 233 GI11221-PA 15..222 85..285 313 33.5 Plus
Dmoj\GI23181-PA 256 GI23181-PA 22..255 85..314 312 33.1 Plus
Dmoj\GI11215-PA 247 GI11215-PA 26..222 86..279 301 34.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18956-PA 316 GL18956-PA 1..309 6..321 1447 85.1 Plus
Dper\GL13082-PA 238 GL13082-PA 25..232 85..284 512 47.6 Plus
Dper\GL19116-PA 243 GL19116-PA 26..228 86..285 327 35.7 Plus
Dper\GL19117-PA 227 GL19117-PA 9..216 85..285 315 34.4 Plus
Dper\GL23484-PA 259 GL23484-PA 22..224 85..284 309 35.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18424-PA 316 GA18424-PA 1..309 6..321 1447 85.1 Plus
Dpse\GA14300-PA 238 GA14300-PA 25..232 85..284 512 47.6 Plus
Dpse\GA10790-PA 243 GA10790-PA 26..228 86..285 329 35.7 Plus
Dpse\GA25356-PA 228 GA25356-PA 10..217 85..285 313 34.4 Plus
Dpse\GA10221-PA 259 GA10221-PA 22..224 85..284 309 35.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17883-PA 334 GM17883-PA 1..334 1..334 1770 99.4 Plus
Dsec\GM23014-PA 226 GM23014-PA 24..220 85..284 361 40.4 Plus
Dsec\GM10569-PA 258 GM10569-PA 22..255 85..314 323 34.3 Plus
Dsec\GM17998-PA 242 GM17998-PA 26..241 86..298 311 33.2 Plus
Dsec\GM23015-PA 230 GM23015-PA 5..216 63..270 224 30.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23651-PA 334 GD23651-PA 1..334 1..334 1775 99.7 Plus
Dsim\GD17480-PA 429 GD17480-PA 175..330 85..232 338 43.6 Plus
Dsim\GD19561-PA 258 GD19561-PA 22..255 85..314 319 34.3 Plus
Dsim\GD22632-PA 249 GD22632-PA 24..232 85..285 304 32.1 Plus
Dsim\GD17481-PA 230 GD17481-PA 5..216 63..270 222 30.1 Plus
Dsim\GD17480-PA 429 GD17480-PA 148..290 130..271 149 35.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17929-PA 313 GJ17929-PA 1..301 6..319 1380 82.8 Plus
Dvir\GJ15813-PA 237 GJ15813-PA 24..231 85..284 495 46.7 Plus
Dvir\GJ18328-PA 247 GJ18328-PA 26..222 86..279 312 35.8 Plus
Dvir\GJ14495-PA 256 GJ14495-PA 22..255 85..314 309 33.1 Plus
Dvir\GJ18329-PA 242 GJ18329-PA 18..229 85..289 307 33.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12722-PA 309 GK12722-PA 1..299 6..321 1331 82.6 Plus
Dwil\GK22307-PA 186 GK22307-PA 1..176 146..321 823 92 Plus
Dwil\GK25193-PA 233 GK25193-PA 23..230 85..284 481 44.2 Plus
Dwil\GK14210-PA 256 GK14210-PA 22..255 85..314 316 33.9 Plus
Dwil\GK15420-PA 244 GK15420-PA 26..228 86..285 305 34.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18893-PA 334 GE18893-PA 1..334 1..334 1763 98.8 Plus
Dyak\GE17864-PA 237 GE17864-PA 24..231 85..284 497 46.6 Plus
Dyak\GE24117-PA 258 GE24117-PA 22..255 85..314 314 33.9 Plus
Dyak\GE18979-PA 249 GE18979-PA 24..232 85..285 305 32.1 Plus
Dyak\GE17865-PA 230 GE17865-PA 5..216 63..270 222 30.1 Plus

GH02976.hyp Sequence

Translation from 37 to 1050

> GH02976.hyp
MSANEMALVKICIFALALAVGLTATKAQESRGGFRGSNSQFRVGPGHPPS
QRHLPPRNRDPVQEASVVPKSKQTAAEKEYEPTEECPEPNGFYPDSKQCD
KYYACLDGVPTERLCADGMVFNDYSPIEEKCDLPYNIDCMKRSKLQTPQP
SLHCPRKNGYFGHEKPGICDKFYFCVDGQFNMITCPAGLVFNPKTGICGW
PDQVGVTGCKSEDVFDFECPKVNESIAVTHPRYADPNDCQFFYVCVNGDL
PRRNGCKLGQVFDEEKETCDWARKVPDCADWYKDRLTDKELDELENPKPK
TTTTKRPPRVRGQSRRKPQPKRVEPEQVKEEEEEEEE*

GH02976.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
obst-B-PA 337 CG4778-PA 1..337 1..337 1879 100 Plus
obst-A-PB 237 CG17052-PB 24..231 85..284 548 46.6 Plus
obst-A-PA 237 CG17052-PA 24..231 85..284 548 46.6 Plus
Gasp-PB 235 CG10287-PB 22..224 85..284 351 36.1 Plus
Gasp-PA 258 CG10287-PA 22..224 85..284 351 36.1 Plus