Clone GH02984 Report

Search the DGRC for GH02984

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:29
Well:84
Vector:pOT2
Associated Gene/TranscriptCG7708-RA
Protein status:GH02984.pep: gold
Preliminary Size:3371
Sequenced Size:3255

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7708 2001-01-01 Release 2 assignment
CG7708 2001-07-04 Blastp of sequenced clone
CG7708 2003-01-01 Sim4 clustering to Release 3
CG7708 2008-04-29 Release 5.5 accounting
CG7708 2008-08-15 Release 5.9 accounting
CG7708 2008-12-18 5.12 accounting

Clone Sequence Records

GH02984.complete Sequence

3255 bp (3255 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047521

> GH02984.complete
TTTTTAGTTTACCAATAGACCGTAGTCAACTGCTCGTTTGTTTTTACCAA
AAACCGAATGGCTTTAGTTTGATTGCTTAATTCATTTTCAAATATCGATC
TGATTGGATTCAGTCCACCTTGAAGTTGGGTTCGATTTAATAGCCCACGC
GATTGCATTTCAAACAAGCCGAAGGCTTGTCAGCACCACTTGAACGAACG
TGTGGGTGGTTGGTTTTCTTTTTTTTTTTTTATATATAATCTGGAACATT
TTCGACAACTTCTCGGGTGCGAAGCTACATAGTGGCATTGGTTTTGATGT
GGCCGACACGCGTTTCCCCAACAGCCGGAGCACATGTGCGGGTTACATTT
TAGGACGCGTAACAGCCCGTCTCAGAAGACGTCCCTCCGCTGGGGCGACT
GCTGTCTAGCCTAGTCTAGTCTAGTGTTCCGACCGCCATTCGTGTTCCTT
GGCCGGAGACCTCATCCTCGAGTTCGATTCCCTCGCGACTCACTGCGTTC
AAGCTAGTACTACTACGGGGCAGCCCGCATCCACCAAGAGCCCGTTTGGA
ACAGGAAATGTTGCATAAGTCGAGGCGCATTTGATTGGCGCGCTTCTTTG
ATTGTCGTCGCTAAGCTCCACAATCGAAAATTGGCGTCCGCTTGAACTTG
GCGCACAAATCGCAAGACAGAGCTAGAAGGTCAACCCCATTTTGAGAGTA
TTTGGTTACAGCAGCGCGTGGAGAACCTTAAGTTTCGTAGCCAAGGACAC
GACTGAACTGCAAGGATGATCAATATCGCTGGCGTGGTGAGCATCGTGCT
CTTCTACCTCCTGATCCTGGTCGTTGGCATTTGGGCCGGTCGCAAGAAGC
AGTCCGGCAATGATTCGGAGGAGGAGGTCATGCTGGCCGGACGCTCCATC
GGCCTCTTCGTGGGCATCTTCACCATGACGGCCACCTGGGTGGGTGGCGG
CTACATCAACGGCACGGCGGAGGCTATATACACATCGGGTCTGGTGTGGT
GCCAGGCTCCATTTGGATACGCTCTAAGCTTGGTATTTGGTGGCATCTTC
TTTGCCAATCCCATGCGCAAGCAGGGTTACATCACCATGTTGGATCCGTT
GCAGGATTCCTTTGGTGAGCGGATGGGAGGATTGCTCTTCCTGCCCGCTC
TATGCGGTGAGGTCTTTTGGGCAGCCGGCATCCTGGCTGCACTTGGCGCC
ACTCTATCGGTGATCATCGACATGGATCACCGCACCTCGGTGATCCTGTC
CTCCTGCATCGCCATCTTCTACACACTGTTCGGTGGACTGTACTCCGTGG
CGTATACGGACGTGATCCAGTTGTTCTGCATCTTCATCGGTCTGTGGATG
TGCATTCCCTTCGCCTGGAGCAACGAGCACGTGGGCAGCCTGAGTGACCT
GGAGGTGGATTGGATTGGGCACGTGGAGCCTAAAAAGCATTGGCTGTACA
TAGACTACGGCTTGCTGCTCGTCTTTGGTGGCATTCCCTGGCAGGTCTAC
TTCCAGCGGGTGCTGTCCAGCAAAACGGCAGGAAGGGCCCAGCTTCTGTC
CTATGTTGCAGCCGCCGGATGCATTTTGATGGCCATTCCCCCGGTGCTCA
TCGGAGCGATTGCCAAGGCTACACCTTGGAACGAGACAGATTACAAGGGA
CCCTATCCCCTGACCGTGGACGAGACGAGCATGATTCTGCCCATGGTGCT
GCAGTACCTCACGCCTGACTTCGTGTCCTTCTTTGGATTGGGCGCTGTTT
CCGCCGCCGTGATGTCCTCCGCCGACTCCTCGGTGCTCTCCGCCGCCTCC
ATGTTCGCTCGGAACGTGTACAAATTGATTTTCCGTCAGAAGGCGTCCGA
GATGGAAATCATTTGGGTGATGCGAGTCGCCATCATTGTGGTGGGCATCC
TGGCTACCATCATGGCCCTCACCATTCCCTCCATCTACGGTTTGTGGTCC
ATGTGCTCGGATCTGGTCTACGTCATTCTGTTCCCGCAGCTACTGATGGT
GGTGCACTTCAAGAAGCACTGCAACACGTACGGCAGCCTGTCGGCATACA
TTGTGGCCCTGGCCATCCGACTGTCGGGCGGTGAGGCCATCTTGGGACTG
GCTCCATTGATCAAGTATCCCGGCTACGACGAGGAGACCAAGGAGCAGAT
GTTCCCCTTCCGCACCATGGCCATGCTGCTCAGCCTGGTCACGCTCATCT
CGGTCTCCTGGTGGACTAAAATGATGTTTGAGTCCGGCAAGTTGCCGCCC
AGCTACGACTACTTCCGCTGTGTGGTCAATATTCCGGAGGATGTGCAGCG
TGTGGGCGATCCCTCGGAGTCGGGTGAGCAGCTATCCGTGATGGCTGGAC
CGCTGGCCCGATCCTACGGAGCGGCCACCATGGCGGGCAAGGATGAGCGC
AATGGCCGCATCAATCCCGCCCTGGAATCGGACGACGATCTGCCGGTGGC
GGAGGCACGTCGCATCAACCAGGAGACGGCGCAGGCGCAGGTCAAAAAGA
TGCTGGATAACGCCACTGGGGTGAAGCCGTCGGGCGGAGGCGGTGGTCAC
CTCCAGAGCCAAAGCGGGATGGCCATGCCCACGGCGGAGCAGGACAATAC
GGCCTTCTGAGCGGAGTAGCGGAGAATCCCATGGCATCTGGGCAGCTGAA
TGCCCGAAAATAGGCTGCAGTTGATACCAGAGAATTATCCGATTTTATGT
TGCGCTTGTTAGGGGGACACAAATGGGGGGAAGTTGGGGTCATCAGATCG
TGGAATGGAGTACAGAAAGTATTAGGAAACGTACGTTAAACACACAAGTG
CTCAGGTAAAAATTGCAGAAAGCTGATCGTAAGGTTTACATTTTCATTTA
GCCAACTTATTGTGTATAGTTTCTACAAGCTTAAAGCGTTGTTCTATCGG
TATTCATTTTGATGTTAGAGTATCTATCTATGTGTAAATGTTCACAAGTC
AATTGACGACGAATACATATCAATTGCATTTTCCTAGCCCGAGAATTGCC
TAGGAACACGTATTAACCCAAAAGGAGTTAGCCCAGTTAAAGTGGCTATG
GATTAAGATGTATGTATAACCAAAGTGACGAGCATTTGAGCAATATGAAT
TGGCATTCCTGGCATTAGCATATCGATCATATATACTATACTATATAGAT
GCATAAAATGTGAATCATGTGTCCTTCCAGAACGAACAAAGCTAAGCAAA
ACTAACTAACTAACAAACCAATGCAAACGAAACATATCAAAAAAAAAAAA
AAAAA

GH02984.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7708-RA 3380 CG7708-RA 126..3380 1..3255 16260 99.9 Plus
CG7708.f 3667 CG7708.f 126..3380 1..3255 16260 99.9 Plus
CG7708.e 4812 CG7708.e 126..3380 1..3255 16260 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 14508400..14509418 2220..3238 5005 99.4 Plus
chr3R 27901430 chr3R 14504791..14505459 2..672 3200 98.8 Plus
chr3R 27901430 chr3R 14506912..14507497 1039..1624 2855 99.1 Plus
chr3R 27901430 chr3R 14506469..14506839 671..1041 1855 100 Plus
chr3R 27901430 chr3R 14507624..14507951 1621..1948 1625 99.7 Plus
chr3R 27901430 chr3R 14508026..14508299 1946..2219 1355 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:28:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18684272..18685307 2220..3255 5165 99.9 Plus
3R 32079331 3R 18680665..18681336 1..672 3360 100 Plus
3R 32079331 3R 18682788..18683373 1039..1624 2930 100 Plus
3R 32079331 3R 18682345..18682715 671..1041 1855 100 Plus
3R 32079331 3R 18683500..18683827 1621..1948 1625 99.7 Plus
3R 32079331 3R 18683902..18684175 1946..2219 1370 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 18425103..18426138 2220..3255 5165 99.9 Plus
3R 31820162 3R 18421496..18422167 1..672 3360 100 Plus
3R 31820162 3R 18423619..18424204 1039..1624 2930 100 Plus
3R 31820162 3R 18423176..18423546 671..1041 1855 100 Plus
3R 31820162 3R 18424331..18424658 1621..1948 1625 99.6 Plus
3R 31820162 3R 18424733..18425006 1946..2219 1370 100 Plus
Blast to na_te.dros performed on 2019-03-16 19:16:24 has no hits.

GH02984.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:17:05 Download gff for GH02984.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 14504790..14505459 1..672 95 -> Plus
chr3R 14506471..14506837 673..1039 100 -> Plus
chr3R 14506913..14507497 1040..1624 99 -> Plus
chr3R 14507628..14507949 1625..1946 100 -> Plus
chr3R 14508027..14508299 1947..2219 99 -> Plus
chr3R 14508400..14509363 2220..3183 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:09:25 Download gff for GH02984.complete
Subject Subject Range Query Range Percent Splice Strand
CG7708-RB 1..1845 766..2610 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:30:02 Download gff for GH02984.complete
Subject Subject Range Query Range Percent Splice Strand
CG7708-RB 1..1845 766..2610 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:35:34 Download gff for GH02984.complete
Subject Subject Range Query Range Percent Splice Strand
CG7708-RA 1..1845 766..2610 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:03:30 Download gff for GH02984.complete
Subject Subject Range Query Range Percent Splice Strand
CG7708-RB 1..1845 766..2610 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:26:13 Download gff for GH02984.complete
Subject Subject Range Query Range Percent Splice Strand
CG7708-RA 1..1845 766..2610 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:30:42 Download gff for GH02984.complete
Subject Subject Range Query Range Percent Splice Strand
CG7708-RA 60..3297 1..3238 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:30:02 Download gff for GH02984.complete
Subject Subject Range Query Range Percent Splice Strand
CG7708-RA 60..3297 1..3238 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:34 Download gff for GH02984.complete
Subject Subject Range Query Range Percent Splice Strand
CG7708-RA 60..3297 1..3238 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:03:31 Download gff for GH02984.complete
Subject Subject Range Query Range Percent Splice Strand
CG7708-RA 60..3297 1..3238 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:26:13 Download gff for GH02984.complete
Subject Subject Range Query Range Percent Splice Strand
CG7708-RA 62..3299 1..3238 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:17:05 Download gff for GH02984.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18683504..18683825 1625..1946 100 -> Plus
3R 18683903..18684175 1947..2219 100 -> Plus
3R 18680665..18681336 1..672 100 -> Plus
3R 18682347..18682713 673..1039 100 -> Plus
3R 18682789..18683373 1040..1624 100 -> Plus
3R 18684272..18685290 2220..3238 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:17:05 Download gff for GH02984.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18683504..18683825 1625..1946 100 -> Plus
3R 18683903..18684175 1947..2219 100 -> Plus
3R 18680665..18681336 1..672 100 -> Plus
3R 18682347..18682713 673..1039 100 -> Plus
3R 18682789..18683373 1040..1624 100 -> Plus
3R 18684272..18685290 2220..3238 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:17:05 Download gff for GH02984.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18683504..18683825 1625..1946 100 -> Plus
3R 18683903..18684175 1947..2219 100 -> Plus
3R 18680665..18681336 1..672 100 -> Plus
3R 18682347..18682713 673..1039 100 -> Plus
3R 18682789..18683373 1040..1624 100 -> Plus
3R 18684272..18685290 2220..3238 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:34 Download gff for GH02984.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14506387..14507058 1..672 100 -> Plus
arm_3R 14508069..14508435 673..1039 100 -> Plus
arm_3R 14508511..14509095 1040..1624 100 -> Plus
arm_3R 14509226..14509547 1625..1946 100 -> Plus
arm_3R 14509625..14509897 1947..2219 100 -> Plus
arm_3R 14509994..14511012 2220..3238 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:41:35 Download gff for GH02984.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18421496..18422167 1..672 100 -> Plus
3R 18423178..18423544 673..1039 100 -> Plus
3R 18423620..18424204 1040..1624 100 -> Plus
3R 18424335..18424656 1625..1946 100 -> Plus
3R 18424734..18425006 1947..2219 100 -> Plus
3R 18425103..18426121 2220..3238 100   Plus

GH02984.pep Sequence

Translation from 765 to 2609

> GH02984.pep
MINIAGVVSIVLFYLLILVVGIWAGRKKQSGNDSEEEVMLAGRSIGLFVG
IFTMTATWVGGGYINGTAEAIYTSGLVWCQAPFGYALSLVFGGIFFANPM
RKQGYITMLDPLQDSFGERMGGLLFLPALCGEVFWAAGILAALGATLSVI
IDMDHRTSVILSSCIAIFYTLFGGLYSVAYTDVIQLFCIFIGLWMCIPFA
WSNEHVGSLSDLEVDWIGHVEPKKHWLYIDYGLLLVFGGIPWQVYFQRVL
SSKTAGRAQLLSYVAAAGCILMAIPPVLIGAIAKATPWNETDYKGPYPLT
VDETSMILPMVLQYLTPDFVSFFGLGAVSAAVMSSADSSVLSAASMFARN
VYKLIFRQKASEMEIIWVMRVAIIVVGILATIMALTIPSIYGLWSMCSDL
VYVILFPQLLMVVHFKKHCNTYGSLSAYIVALAIRLSGGEAILGLAPLIK
YPGYDEETKEQMFPFRTMAMLLSLVTLISVSWWTKMMFESGKLPPSYDYF
RCVVNIPEDVQRVGDPSESGEQLSVMAGPLARSYGAATMAGKDERNGRIN
PALESDDDLPVAEARRINQETAQAQVKKMLDNATGVKPSGGGGGHLQSQS
GMAMPTAEQDNTAF*

GH02984.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17121-PA 613 GF17121-PA 1..613 1..614 3151 97.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23047-PA 614 GG23047-PA 1..614 1..614 3237 99.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18618-PA 610 GH18618-PA 1..610 1..614 2953 93.3 Plus
Dgri\GH23999-PA 591 GH23999-PA 20..400 8..380 158 24.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7708-PB 614 CG7708-PB 1..614 1..614 3175 100 Plus
CG7708-PA 614 CG7708-PA 1..614 1..614 3175 100 Plus
CG6723-PA 587 CG6723-PA 20..407 8..387 198 22.9 Plus
CG10444-PA 587 CG10444-PA 12..453 5..434 168 19.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10807-PA 610 GI10807-PA 1..610 1..614 2955 93 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24427-PA 609 GL24427-PA 1..310 1..310 1633 98.4 Plus
Dper\GL24427-PA 609 GL24427-PA 496..609 495..614 504 85 Plus
Dper\GL12607-PA 589 GL12607-PA 20..407 8..387 161 23.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20532-PA 608 GA20532-PA 1..608 1..614 2988 94.6 Plus
Dpse\GA27570-PA 589 GA27570-PA 20..407 8..387 161 23.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17885-PA 586 GM17885-PA 1..586 1..614 3062 95.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:53:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19244-PA 614 GD19244-PA 1..614 1..614 3245 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14405-PA 609 GJ14405-PA 1..609 1..614 2911 91.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13737-PA 605 GK13737-PA 1..605 1..614 2977 93.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25555-PA 614 GE25555-PA 1..614 1..614 3242 99.8 Plus

GH02984.hyp Sequence

Translation from 765 to 2609

> GH02984.hyp
MINIAGVVSIVLFYLLILVVGIWAGRKKQSGNDSEEEVMLAGRSIGLFVG
IFTMTATWVGGGYINGTAEAIYTSGLVWCQAPFGYALSLVFGGIFFANPM
RKQGYITMLDPLQDSFGERMGGLLFLPALCGEVFWAAGILAALGATLSVI
IDMDHRTSVILSSCIAIFYTLFGGLYSVAYTDVIQLFCIFIGLWMCIPFA
WSNEHVGSLSDLEVDWIGHVEPKKHWLYIDYGLLLVFGGIPWQVYFQRVL
SSKTAGRAQLLSYVAAAGCILMAIPPVLIGAIAKATPWNETDYKGPYPLT
VDETSMILPMVLQYLTPDFVSFFGLGAVSAAVMSSADSSVLSAASMFARN
VYKLIFRQKASEMEIIWVMRVAIIVVGILATIMALTIPSIYGLWSMCSDL
VYVILFPQLLMVVHFKKHCNTYGSLSAYIVALAIRLSGGEAILGLAPLIK
YPGYDEETKEQMFPFRTMAMLLSLVTLISVSWWTKMMFESGKLPPSYDYF
RCVVNIPEDVQRVGDPSESGEQLSVMAGPLARSYGAATMAGKDERNGRIN
PALESDDDLPVAEARRINQETAQAQVKKMLDNATGVKPSGGGGGHLQSQS
GMAMPTAEQDNTAF*

GH02984.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7708-PB 614 CG7708-PB 1..614 1..614 3175 100 Plus
CG7708-PA 614 CG7708-PA 1..614 1..614 3175 100 Plus
CG6723-PA 587 CG6723-PA 20..407 8..387 198 22.9 Plus
CG10444-PA 587 CG10444-PA 12..453 5..434 168 19.4 Plus