BDGP Sequence Production Resources |
Search the DGRC for GH03016
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 30 |
Well: | 16 |
Vector: | pOT2 |
Associated Gene/Transcript | Rh50-RA |
Protein status: | GH03016.pep: gold |
Preliminary Size: | 1840 |
Sequenced Size: | 1838 |
Gene | Date | Evidence |
---|---|---|
CG7499 | 2000-02-14 | Blastp of sequenced clone |
CG7499 | 2001-01-01 | Release 2 assignment |
CG7499 | 2003-01-01 | Sim4 clustering to Release 3 |
Rh50 | 2008-04-29 | Release 5.5 accounting |
Rh50 | 2008-08-15 | Release 5.9 accounting |
Rh50 | 2008-12-18 | 5.12 accounting |
1838 bp (1838 high quality bases) assembled on 2000-02-14
GenBank Submission: AF181624
> GH03016.complete TGCTCAGCCGCAGCAGATCGTGAATGTGAACGGATATATATAACATATAT CTATACAGTTGAACAGTGTGCATCCCCATGTCTGGGAGATAGAGCAGAAA AGCGCACAAATATTTGCACATCCCAAAAGGGGAACAAGACCTCCTGTCCC CGTACACGTGCTGCATCGTCTGCGGCCGGGATCTGAAAAGTAAAAACTCC GACTCCGGTTCCGTCTCCACTTTTTACTCGAACTCCAATCAGGAGCCGTT TCGTCTAGTTTTTTTTTCGTATTTTTTGCCCGAGCTCCACGTCCTTCATC TTGCCACCATGCATTCGCCGGCTGCCAAAGTGTCGGGCTACGTCGTCCTG ATGATTGTGCAAATAATCTTCCTGGTTCTATTCTGGCTGTTCGTGCGTTA CGAAAAGACGGCGCTGCCCCTGGCAATCGACGCCGAAGACGCTGGATCAG CAAACGAACACGTTTCCAAATATCCGCAGTTCCAGGACATCCAGGTGATG ATCTTCATTGGCTTTGGCTTCCTAATGACCTTCCTGCGGAAGTACGGATA CAGTGCCACCGGATTCACCCTGTTCATGGCTGCTCTAGTAGTGCAATGGG CTGTGCTCATGAAGGGATTCCTCCACATGGAGGGCGGCAAGATCAGCCTC TCCCTGGAGAACATCATTGATGCGGATATAGCCGCCGCGGTGCCCCTGAT AAGCATGGGCGCTCTGCTCGGCAGAACCACGCCCATCCAACTCCTGTGCA TGTCCGTTTTTGAGGTGGCTCTTTTCGCGGCCAATGAGTATCTGGCTCTT CATGTGTTCAGTATCTGCGACTGCGGCGGCTCTATCACTGTCCATGCTTT TGGAGCCTACTTTGGACTGGCTGTTGCCCTGATGCTGAGACCCGCCAGCG ACCAGAACGAAACGGGAAAGCTAGAGGGCGCCAGCTATACGTCGGACATC TTCGCCATGATCGGCACCACCTTCCTGTGGGTGTACTGGCCCAGCTTTAA CTCCGTTCTGGCCGACGGAGCCGGCGGCGAGCGGGCCATTTTGAACACGT TCCTGTCATTAGCCGCGGCAACAGTGACCACCTTCGTTGTATCCGCGCTT GTCAGCCACGAGAATAAATTGGACATGGTGCACGTGCAGAACTCGACCCT CGCCGGCGGAGTTGCCGTGGGCACGGTGTGCAACTTGCTGCTCGGCGCCC ACGGAGCTGTCTTAATTGGCATTATCGCCGGCACGGTCTCGGTGCTCGGC TATCGCTATTTAACACCCTGGATGACGGCCAATCTGAGGCTGCACGACAC CTGTGGCGTGCACAACCTGCACGGAATGCCTGCCCTGATTTCGGCCATTG CCTCCGCCATTTACGCCTCGATGGCCACCGTGGGCGAGTACCAATCCGAG CTGCAGGACATTTTCCCGGCCATGGTGGGCACCAACGGAACCGAGACCAA AATCATGGGCGGTCTTGGCCGGAACGCTACTTCGCAGGCGGGCTACCAAT TGTTTGGCATCGCTGTCACACTGCTCATTGCCATCGGAGGTGGTATTTTG ACAGGTGCCGTTTTGAAGTACACCAACTTCCGGAACCTGAAGAAGGACGA ACATCACCAGGACGAGCACTACTGGGAAGTTCCGGCTGCCGAGAACAAGG AGGAATAGTTAAGTGTTGTGCCTGTCAGATTGATCACAGTTCACGCGACT CTAATGTGCCTTGTCTAACTACTTACGACTACCTTACTATTATTATTATT ATTTTATTTACATTATTTTGTTGTATGAAATGCACGCAATGCCATTGTGC CTGCCCGCATCCGAAATCAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rh50-RA | 2247 | Rh50-RA | 74..1894 | 1..1821 | 9105 | 100 | Plus |
Rh50.a | 2025 | Rh50.a | 70..1726 | 1..1657 | 8285 | 100 | Plus |
Rh50.b | 2094 | Rh50.b | 248..1826 | 243..1821 | 7895 | 100 | Plus |
Rh50.b | 2094 | Rh50.b | 59..248 | 1..190 | 950 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 4909859..4910335 | 1..477 | 2325 | 99.2 | Plus |
chr3L | 24539361 | chr3L | 4918234..4918501 | 1551..1818 | 1340 | 100 | Plus |
chr3L | 24539361 | chr3L | 4913168..4913429 | 813..1074 | 1310 | 100 | Plus |
chr3L | 24539361 | chr3L | 4917799..4917994 | 1266..1461 | 980 | 100 | Plus |
chr3L | 24539361 | chr3L | 4916924..4917117 | 1072..1265 | 970 | 100 | Plus |
chr3L | 24539361 | chr3L | 4912145..4912313 | 478..646 | 845 | 100 | Plus |
chr3L | 24539361 | chr3L | 4912924..4913092 | 644..812 | 845 | 100 | Plus |
chr3L | 24539361 | chr3L | 4918075..4918170 | 1461..1556 | 480 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 4910386..4910862 | 1..477 | 2385 | 100 | Plus |
3L | 28110227 | 3L | 4918755..4919025 | 1551..1821 | 1355 | 100 | Plus |
3L | 28110227 | 3L | 4913695..4913956 | 813..1074 | 1310 | 100 | Plus |
3L | 28110227 | 3L | 4918320..4918515 | 1266..1461 | 980 | 100 | Plus |
3L | 28110227 | 3L | 4917454..4917647 | 1072..1265 | 970 | 100 | Plus |
3L | 28110227 | 3L | 4912672..4912840 | 478..646 | 845 | 100 | Plus |
3L | 28110227 | 3L | 4913451..4913619 | 644..812 | 845 | 100 | Plus |
3L | 28110227 | 3L | 4918596..4918691 | 1461..1556 | 480 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 4910386..4910862 | 1..477 | 2385 | 100 | Plus |
3L | 28103327 | 3L | 4918755..4919025 | 1551..1821 | 1355 | 100 | Plus |
3L | 28103327 | 3L | 4913695..4913956 | 813..1074 | 1310 | 100 | Plus |
3L | 28103327 | 3L | 4918320..4918515 | 1266..1461 | 980 | 100 | Plus |
3L | 28103327 | 3L | 4917454..4917647 | 1072..1265 | 970 | 100 | Plus |
3L | 28103327 | 3L | 4913451..4913619 | 644..812 | 845 | 100 | Plus |
3L | 28103327 | 3L | 4912672..4912840 | 478..646 | 845 | 100 | Plus |
3L | 28103327 | 3L | 4918596..4918691 | 1461..1556 | 480 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
pogo | 2121 | pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). | 264..320 | 744..800 | 114 | 66.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 4909859..4910335 | 1..477 | 99 | -> | Plus |
chr3L | 4912145..4912313 | 478..646 | 100 | -> | Plus |
chr3L | 4912927..4913092 | 647..812 | 100 | -> | Plus |
chr3L | 4913168..4913429 | 813..1074 | 100 | -> | Plus |
chr3L | 4916927..4917117 | 1075..1265 | 100 | -> | Plus |
chr3L | 4917799..4917993 | 1266..1460 | 100 | -> | Plus |
chr3L | 4918075..4918168 | 1461..1554 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rh50-RA | 1..1350 | 309..1658 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rh50-RA | 1..1350 | 309..1658 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rh50-RA | 1..1350 | 309..1658 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rh50-RA | 1..1350 | 309..1658 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rh50-RA | 1..1350 | 309..1658 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rh50-RA | 1..1818 | 1..1818 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rh50-RA | 17..1834 | 1..1818 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rh50-RA | 19..1836 | 1..1818 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rh50-RA | 1..1818 | 1..1818 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rh50-RA | 19..1836 | 1..1818 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4918320..4918514 | 1266..1460 | 100 | -> | Plus |
3L | 4918596..4918689 | 1461..1554 | 100 | -> | Plus |
3L | 4918759..4919022 | 1555..1818 | 100 | Plus | |
3L | 4910386..4910862 | 1..477 | 100 | -> | Plus |
3L | 4912672..4912840 | 478..646 | 100 | -> | Plus |
3L | 4913454..4913619 | 647..812 | 100 | -> | Plus |
3L | 4913695..4913956 | 813..1074 | 100 | -> | Plus |
3L | 4917457..4917647 | 1075..1265 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4918320..4918514 | 1266..1460 | 100 | -> | Plus |
3L | 4918596..4918689 | 1461..1554 | 100 | -> | Plus |
3L | 4918759..4919022 | 1555..1818 | 100 | Plus | |
3L | 4910386..4910862 | 1..477 | 100 | -> | Plus |
3L | 4912672..4912840 | 478..646 | 100 | -> | Plus |
3L | 4913454..4913619 | 647..812 | 100 | -> | Plus |
3L | 4913695..4913956 | 813..1074 | 100 | -> | Plus |
3L | 4917457..4917647 | 1075..1265 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4918320..4918514 | 1266..1460 | 100 | -> | Plus |
3L | 4918596..4918689 | 1461..1554 | 100 | -> | Plus |
3L | 4918759..4919022 | 1555..1818 | 100 | Plus | |
3L | 4910386..4910862 | 1..477 | 100 | -> | Plus |
3L | 4912672..4912840 | 478..646 | 100 | -> | Plus |
3L | 4913454..4913619 | 647..812 | 100 | -> | Plus |
3L | 4913695..4913956 | 813..1074 | 100 | -> | Plus |
3L | 4917457..4917647 | 1075..1265 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 4910386..4910862 | 1..477 | 100 | -> | Plus |
arm_3L | 4912672..4912840 | 478..646 | 100 | -> | Plus |
arm_3L | 4913454..4913619 | 647..812 | 100 | -> | Plus |
arm_3L | 4913695..4913956 | 813..1074 | 100 | -> | Plus |
arm_3L | 4917457..4917647 | 1075..1265 | 100 | -> | Plus |
arm_3L | 4918320..4918514 | 1266..1460 | 100 | -> | Plus |
arm_3L | 4918596..4918689 | 1461..1554 | 100 | -> | Plus |
arm_3L | 4918759..4919022 | 1555..1818 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4910386..4910862 | 1..477 | 100 | -> | Plus |
3L | 4912672..4912840 | 478..646 | 100 | -> | Plus |
3L | 4913454..4913619 | 647..812 | 100 | -> | Plus |
3L | 4913695..4913956 | 813..1074 | 100 | -> | Plus |
3L | 4917457..4917647 | 1075..1265 | 100 | -> | Plus |
3L | 4918320..4918514 | 1266..1460 | 100 | -> | Plus |
3L | 4918596..4918689 | 1461..1554 | 100 | -> | Plus |
3L | 4918759..4919022 | 1555..1818 | 100 | Plus |
Translation from 308 to 1657
> GH03016.hyp MHSPAAKVSGYVVLMIVQIIFLVLFWLFVRYEKTALPLAIDAEDAGSANE HVSKYPQFQDIQVMIFIGFGFLMTFLRKYGYSATGFTLFMAALVVQWAVL MKGFLHMEGGKISLSLENIIDADIAAAVPLISMGALLGRTTPIQLLCMSV FEVALFAANEYLALHVFSICDCGGSITVHAFGAYFGLAVALMLRPASDQN ETGKLEGASYTSDIFAMIGTTFLWVYWPSFNSVLADGAGGERAILNTFLS LAAATVTTFVVSALVSHENKLDMVHVQNSTLAGGVAVGTVCNLLLGAHGA VLIGIIAGTVSVLGYRYLTPWMTANLRLHDTCGVHNLHGMPALISAIASA IYASMATVGEYQSELQDIFPAMVGTNGTETKIMGGLGRNATSQAGYQLFG IAVTLLIAIGGGILTGAVLKYTNFRNLKKDEHHQDEHYWEVPAAENKEE*
Translation from 308 to 1657
> GH03016.pep MHSPAAKVSGYVVLMIVQIIFLVLFWLFVRYEKTALPLAIDAEDAGSANE HVSKYPQFQDIQVMIFIGFGFLMTFLRKYGYSATGFTLFMAALVVQWAVL MKGFLHMEGGKISLSLENIIDADIAAAVPLISMGALLGRTTPIQLLCMSV FEVALFAANEYLALHVFSICDCGGSITVHAFGAYFGLAVALMLRPASDQN ETGKLEGASYTSDIFAMIGTTFLWVYWPSFNSVLADGAGGERAILNTFLS LAAATVTTFVVSALVSHENKLDMVHVQNSTLAGGVAVGTVCNLLLGAHGA VLIGIIAGTVSVLGYRYLTPWMTANLRLHDTCGVHNLHGMPALISAIASA IYASMATVGEYQSELQDIFPAMVGTNGTETKIMGGLGRNATSQAGYQLFG IAVTLLIAIGGGILTGAVLKYTNFRNLKKDEHHQDEHYWEVPAAENKEE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF25097-PA | 449 | GF25097-PA | 1..449 | 1..449 | 2252 | 94.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15254-PA | 449 | GG15254-PA | 1..449 | 1..449 | 2311 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rh50-PC | 460 | CG7499-PC | 1..449 | 1..449 | 2295 | 100 | Plus |
Rh50-PB | 460 | CG7499-PB | 1..449 | 1..449 | 2295 | 100 | Plus |
Rh50-PA | 449 | CG7499-PA | 1..449 | 1..449 | 2295 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12755-PA | 449 | GI12755-PA | 1..449 | 1..449 | 2164 | 89.5 | Plus |
Dmoj\GI11271-PA | 130 | GI11271-PA | 1..130 | 320..449 | 606 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15334-PA | 78 | GL15334-PA | 1..78 | 372..449 | 356 | 84.6 | Plus |
Dper\GL15333-PA | 63 | GL15333-PA | 1..57 | 1..57 | 266 | 87.7 | Plus |
Dper\GL16041-PA | 68 | GL16041-PA | 1..53 | 273..325 | 233 | 92.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20395-PA | 449 | GA20395-PA | 1..449 | 1..449 | 2192 | 91.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14687-PA | 449 | GM14687-PA | 1..449 | 1..449 | 2357 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\Rh50-PA | 449 | GD13869-PA | 1..449 | 1..449 | 2357 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15523-PA | 449 | GJ15523-PA | 1..449 | 1..449 | 2171 | 89.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16605-PA | 449 | GK16605-PA | 1..449 | 1..449 | 2208 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21473-PA | 449 | GE21473-PA | 1..449 | 1..449 | 2339 | 98.2 | Plus |