Clone GH03016 Report

Search the DGRC for GH03016

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:30
Well:16
Vector:pOT2
Associated Gene/TranscriptRh50-RA
Protein status:GH03016.pep: gold
Preliminary Size:1840
Sequenced Size:1838

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7499 2000-02-14 Blastp of sequenced clone
CG7499 2001-01-01 Release 2 assignment
CG7499 2003-01-01 Sim4 clustering to Release 3
Rh50 2008-04-29 Release 5.5 accounting
Rh50 2008-08-15 Release 5.9 accounting
Rh50 2008-12-18 5.12 accounting

Clone Sequence Records

GH03016.complete Sequence

1838 bp (1838 high quality bases) assembled on 2000-02-14

GenBank Submission: AF181624

> GH03016.complete
TGCTCAGCCGCAGCAGATCGTGAATGTGAACGGATATATATAACATATAT
CTATACAGTTGAACAGTGTGCATCCCCATGTCTGGGAGATAGAGCAGAAA
AGCGCACAAATATTTGCACATCCCAAAAGGGGAACAAGACCTCCTGTCCC
CGTACACGTGCTGCATCGTCTGCGGCCGGGATCTGAAAAGTAAAAACTCC
GACTCCGGTTCCGTCTCCACTTTTTACTCGAACTCCAATCAGGAGCCGTT
TCGTCTAGTTTTTTTTTCGTATTTTTTGCCCGAGCTCCACGTCCTTCATC
TTGCCACCATGCATTCGCCGGCTGCCAAAGTGTCGGGCTACGTCGTCCTG
ATGATTGTGCAAATAATCTTCCTGGTTCTATTCTGGCTGTTCGTGCGTTA
CGAAAAGACGGCGCTGCCCCTGGCAATCGACGCCGAAGACGCTGGATCAG
CAAACGAACACGTTTCCAAATATCCGCAGTTCCAGGACATCCAGGTGATG
ATCTTCATTGGCTTTGGCTTCCTAATGACCTTCCTGCGGAAGTACGGATA
CAGTGCCACCGGATTCACCCTGTTCATGGCTGCTCTAGTAGTGCAATGGG
CTGTGCTCATGAAGGGATTCCTCCACATGGAGGGCGGCAAGATCAGCCTC
TCCCTGGAGAACATCATTGATGCGGATATAGCCGCCGCGGTGCCCCTGAT
AAGCATGGGCGCTCTGCTCGGCAGAACCACGCCCATCCAACTCCTGTGCA
TGTCCGTTTTTGAGGTGGCTCTTTTCGCGGCCAATGAGTATCTGGCTCTT
CATGTGTTCAGTATCTGCGACTGCGGCGGCTCTATCACTGTCCATGCTTT
TGGAGCCTACTTTGGACTGGCTGTTGCCCTGATGCTGAGACCCGCCAGCG
ACCAGAACGAAACGGGAAAGCTAGAGGGCGCCAGCTATACGTCGGACATC
TTCGCCATGATCGGCACCACCTTCCTGTGGGTGTACTGGCCCAGCTTTAA
CTCCGTTCTGGCCGACGGAGCCGGCGGCGAGCGGGCCATTTTGAACACGT
TCCTGTCATTAGCCGCGGCAACAGTGACCACCTTCGTTGTATCCGCGCTT
GTCAGCCACGAGAATAAATTGGACATGGTGCACGTGCAGAACTCGACCCT
CGCCGGCGGAGTTGCCGTGGGCACGGTGTGCAACTTGCTGCTCGGCGCCC
ACGGAGCTGTCTTAATTGGCATTATCGCCGGCACGGTCTCGGTGCTCGGC
TATCGCTATTTAACACCCTGGATGACGGCCAATCTGAGGCTGCACGACAC
CTGTGGCGTGCACAACCTGCACGGAATGCCTGCCCTGATTTCGGCCATTG
CCTCCGCCATTTACGCCTCGATGGCCACCGTGGGCGAGTACCAATCCGAG
CTGCAGGACATTTTCCCGGCCATGGTGGGCACCAACGGAACCGAGACCAA
AATCATGGGCGGTCTTGGCCGGAACGCTACTTCGCAGGCGGGCTACCAAT
TGTTTGGCATCGCTGTCACACTGCTCATTGCCATCGGAGGTGGTATTTTG
ACAGGTGCCGTTTTGAAGTACACCAACTTCCGGAACCTGAAGAAGGACGA
ACATCACCAGGACGAGCACTACTGGGAAGTTCCGGCTGCCGAGAACAAGG
AGGAATAGTTAAGTGTTGTGCCTGTCAGATTGATCACAGTTCACGCGACT
CTAATGTGCCTTGTCTAACTACTTACGACTACCTTACTATTATTATTATT
ATTTTATTTACATTATTTTGTTGTATGAAATGCACGCAATGCCATTGTGC
CTGCCCGCATCCGAAATCAAAAAAAAAAAAAAAAAAAA

GH03016.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
Rh50-RA 2247 Rh50-RA 74..1894 1..1821 9105 100 Plus
Rh50.a 2025 Rh50.a 70..1726 1..1657 8285 100 Plus
Rh50.b 2094 Rh50.b 248..1826 243..1821 7895 100 Plus
Rh50.b 2094 Rh50.b 59..248 1..190 950 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4909859..4910335 1..477 2325 99.2 Plus
chr3L 24539361 chr3L 4918234..4918501 1551..1818 1340 100 Plus
chr3L 24539361 chr3L 4913168..4913429 813..1074 1310 100 Plus
chr3L 24539361 chr3L 4917799..4917994 1266..1461 980 100 Plus
chr3L 24539361 chr3L 4916924..4917117 1072..1265 970 100 Plus
chr3L 24539361 chr3L 4912145..4912313 478..646 845 100 Plus
chr3L 24539361 chr3L 4912924..4913092 644..812 845 100 Plus
chr3L 24539361 chr3L 4918075..4918170 1461..1556 480 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:29:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4910386..4910862 1..477 2385 100 Plus
3L 28110227 3L 4918755..4919025 1551..1821 1355 100 Plus
3L 28110227 3L 4913695..4913956 813..1074 1310 100 Plus
3L 28110227 3L 4918320..4918515 1266..1461 980 100 Plus
3L 28110227 3L 4917454..4917647 1072..1265 970 100 Plus
3L 28110227 3L 4912672..4912840 478..646 845 100 Plus
3L 28110227 3L 4913451..4913619 644..812 845 100 Plus
3L 28110227 3L 4918596..4918691 1461..1556 480 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4910386..4910862 1..477 2385 100 Plus
3L 28103327 3L 4918755..4919025 1551..1821 1355 100 Plus
3L 28103327 3L 4913695..4913956 813..1074 1310 100 Plus
3L 28103327 3L 4918320..4918515 1266..1461 980 100 Plus
3L 28103327 3L 4917454..4917647 1072..1265 970 100 Plus
3L 28103327 3L 4913451..4913619 644..812 845 100 Plus
3L 28103327 3L 4912672..4912840 478..646 845 100 Plus
3L 28103327 3L 4918596..4918691 1461..1556 480 100 Plus
Blast to na_te.dros performed 2019-03-15 19:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
pogo 2121 pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). 264..320 744..800 114 66.7 Plus

GH03016.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:09:21 Download gff for GH03016.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4909859..4910335 1..477 99 -> Plus
chr3L 4912145..4912313 478..646 100 -> Plus
chr3L 4912927..4913092 647..812 100 -> Plus
chr3L 4913168..4913429 813..1074 100 -> Plus
chr3L 4916927..4917117 1075..1265 100 -> Plus
chr3L 4917799..4917993 1266..1460 100 -> Plus
chr3L 4918075..4918168 1461..1554 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:09:34 Download gff for GH03016.complete
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 1..1350 309..1658 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:34:33 Download gff for GH03016.complete
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 1..1350 309..1658 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:43:10 Download gff for GH03016.complete
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 1..1350 309..1658 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:09:09 Download gff for GH03016.complete
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 1..1350 309..1658 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:11:09 Download gff for GH03016.complete
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 1..1350 309..1658 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:37:06 Download gff for GH03016.complete
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 1..1818 1..1818 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:34:33 Download gff for GH03016.complete
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 17..1834 1..1818 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:43:10 Download gff for GH03016.complete
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 19..1836 1..1818 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:09:09 Download gff for GH03016.complete
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 1..1818 1..1818 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:11:09 Download gff for GH03016.complete
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 19..1836 1..1818 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:09:21 Download gff for GH03016.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4918320..4918514 1266..1460 100 -> Plus
3L 4918596..4918689 1461..1554 100 -> Plus
3L 4918759..4919022 1555..1818 100   Plus
3L 4910386..4910862 1..477 100 -> Plus
3L 4912672..4912840 478..646 100 -> Plus
3L 4913454..4913619 647..812 100 -> Plus
3L 4913695..4913956 813..1074 100 -> Plus
3L 4917457..4917647 1075..1265 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:09:21 Download gff for GH03016.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4918320..4918514 1266..1460 100 -> Plus
3L 4918596..4918689 1461..1554 100 -> Plus
3L 4918759..4919022 1555..1818 100   Plus
3L 4910386..4910862 1..477 100 -> Plus
3L 4912672..4912840 478..646 100 -> Plus
3L 4913454..4913619 647..812 100 -> Plus
3L 4913695..4913956 813..1074 100 -> Plus
3L 4917457..4917647 1075..1265 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:09:21 Download gff for GH03016.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4918320..4918514 1266..1460 100 -> Plus
3L 4918596..4918689 1461..1554 100 -> Plus
3L 4918759..4919022 1555..1818 100   Plus
3L 4910386..4910862 1..477 100 -> Plus
3L 4912672..4912840 478..646 100 -> Plus
3L 4913454..4913619 647..812 100 -> Plus
3L 4913695..4913956 813..1074 100 -> Plus
3L 4917457..4917647 1075..1265 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:43:10 Download gff for GH03016.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4910386..4910862 1..477 100 -> Plus
arm_3L 4912672..4912840 478..646 100 -> Plus
arm_3L 4913454..4913619 647..812 100 -> Plus
arm_3L 4913695..4913956 813..1074 100 -> Plus
arm_3L 4917457..4917647 1075..1265 100 -> Plus
arm_3L 4918320..4918514 1266..1460 100 -> Plus
arm_3L 4918596..4918689 1461..1554 100 -> Plus
arm_3L 4918759..4919022 1555..1818 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:46:44 Download gff for GH03016.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4910386..4910862 1..477 100 -> Plus
3L 4912672..4912840 478..646 100 -> Plus
3L 4913454..4913619 647..812 100 -> Plus
3L 4913695..4913956 813..1074 100 -> Plus
3L 4917457..4917647 1075..1265 100 -> Plus
3L 4918320..4918514 1266..1460 100 -> Plus
3L 4918596..4918689 1461..1554 100 -> Plus
3L 4918759..4919022 1555..1818 100   Plus

GH03016.hyp Sequence

Translation from 308 to 1657

> GH03016.hyp
MHSPAAKVSGYVVLMIVQIIFLVLFWLFVRYEKTALPLAIDAEDAGSANE
HVSKYPQFQDIQVMIFIGFGFLMTFLRKYGYSATGFTLFMAALVVQWAVL
MKGFLHMEGGKISLSLENIIDADIAAAVPLISMGALLGRTTPIQLLCMSV
FEVALFAANEYLALHVFSICDCGGSITVHAFGAYFGLAVALMLRPASDQN
ETGKLEGASYTSDIFAMIGTTFLWVYWPSFNSVLADGAGGERAILNTFLS
LAAATVTTFVVSALVSHENKLDMVHVQNSTLAGGVAVGTVCNLLLGAHGA
VLIGIIAGTVSVLGYRYLTPWMTANLRLHDTCGVHNLHGMPALISAIASA
IYASMATVGEYQSELQDIFPAMVGTNGTETKIMGGLGRNATSQAGYQLFG
IAVTLLIAIGGGILTGAVLKYTNFRNLKKDEHHQDEHYWEVPAAENKEE*

GH03016.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
Rh50-PC 460 CG7499-PC 1..449 1..449 2295 100 Plus
Rh50-PB 460 CG7499-PB 1..449 1..449 2295 100 Plus
Rh50-PA 449 CG7499-PA 1..449 1..449 2295 100 Plus

GH03016.pep Sequence

Translation from 308 to 1657

> GH03016.pep
MHSPAAKVSGYVVLMIVQIIFLVLFWLFVRYEKTALPLAIDAEDAGSANE
HVSKYPQFQDIQVMIFIGFGFLMTFLRKYGYSATGFTLFMAALVVQWAVL
MKGFLHMEGGKISLSLENIIDADIAAAVPLISMGALLGRTTPIQLLCMSV
FEVALFAANEYLALHVFSICDCGGSITVHAFGAYFGLAVALMLRPASDQN
ETGKLEGASYTSDIFAMIGTTFLWVYWPSFNSVLADGAGGERAILNTFLS
LAAATVTTFVVSALVSHENKLDMVHVQNSTLAGGVAVGTVCNLLLGAHGA
VLIGIIAGTVSVLGYRYLTPWMTANLRLHDTCGVHNLHGMPALISAIASA
IYASMATVGEYQSELQDIFPAMVGTNGTETKIMGGLGRNATSQAGYQLFG
IAVTLLIAIGGGILTGAVLKYTNFRNLKKDEHHQDEHYWEVPAAENKEE*

GH03016.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25097-PA 449 GF25097-PA 1..449 1..449 2252 94.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15254-PA 449 GG15254-PA 1..449 1..449 2311 97.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
Rh50-PC 460 CG7499-PC 1..449 1..449 2295 100 Plus
Rh50-PB 460 CG7499-PB 1..449 1..449 2295 100 Plus
Rh50-PA 449 CG7499-PA 1..449 1..449 2295 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12755-PA 449 GI12755-PA 1..449 1..449 2164 89.5 Plus
Dmoj\GI11271-PA 130 GI11271-PA 1..130 320..449 606 84.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15334-PA 78 GL15334-PA 1..78 372..449 356 84.6 Plus
Dper\GL15333-PA 63 GL15333-PA 1..57 1..57 266 87.7 Plus
Dper\GL16041-PA 68 GL16041-PA 1..53 273..325 233 92.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20395-PA 449 GA20395-PA 1..449 1..449 2192 91.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14687-PA 449 GM14687-PA 1..449 1..449 2357 99.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Rh50-PA 449 GD13869-PA 1..449 1..449 2357 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15523-PA 449 GJ15523-PA 1..449 1..449 2171 89.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16605-PA 449 GK16605-PA 1..449 1..449 2208 92.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21473-PA 449 GE21473-PA 1..449 1..449 2339 98.2 Plus