Clone GH03029 Report

Search the DGRC for GH03029

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:30
Well:29
Vector:pOT2
Associated Gene/TranscriptCG15012-RC
Protein status:GH03029.pep: gold
Preliminary Size:1300
Sequenced Size:844

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15012 2001-01-01 Release 2 assignment
CG15012 2002-07-13 Blastp of sequenced clone
CG15012 2003-01-01 Sim4 clustering to Release 3
CG15012 2008-04-29 Release 5.5 accounting
CG15012 2008-08-15 Release 5.9 accounting
CG15012 2008-12-18 5.12 accounting

Clone Sequence Records

GH03029.complete Sequence

844 bp (844 high quality bases) assembled on 2002-07-13

GenBank Submission: BT001382

> GH03029.complete
TGCGTCAAAACAAGAAGATTTAAGAGTGGAATAAATTTAATTACGTTTTA
AAACCTAAACAATGGGCGTGTTGGACAATATTGCGTTGCATTTCACGGGG
GATGCGTCCAGGAACAGGAACACCTCCATAATAGCCGGACTTCTGTTTTT
CGCAGGATGGTGGGTTCTAATCGATGCCATGTCCATCGACGGCAAGCACC
AGATTACCACAGGACACGTCTTCATCGGCATCTTCGGGACCATCAGCTTC
TGCATGGTGAACGCAGTGAAGGGAGAACATATTTCTGATGAGAACTCATC
GGAGTCCGGCGCCAGGATAGCGAAGATCTGGCTGCTTGTGGGCTTCCTAA
TGGGTTTTGCCTCCATCATTGCCGCCATCTGGGTGATGATCGACGACTTC
ATCAACAATGAAAAGAAGGATGGCTGGTTTGGCGTGGCTCTGCTGATGCA
AAACGTCTTCATCCTGTTCGCCAGTTTGGTCTACAAGTTTGGACGCAACG
AGGAAGAGTGGAATGAGTAAAGCTTCCATTCAAATTATTGCACAAGGGAA
CGCAGCTTTTAGTATCTAGACTCATTACGTACATAATCAGGAGTCCAAGG
AGTTTATGCTTGAGGCCGAGGACACCATCACTCGCAAATCCTCACCCCAC
ACATTGAAGCGTAAAATGTCCAACTCTGCTACTGTTCATATTCGAAAAAA
TCGTCGAGTCTGTACGGATTTCCCTCACTATTTCCGACATTCTGCCGCTT
TGAATCGGAAAAGGGCGCAGAGCAGGGCCAATAATCTCATTTATATTTAA
CAAAATAAACGACAAGTCACTTGCGTAAAAAAAAAAAAAAAAAA

GH03029.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG15012-RC 1079 CG15012-RC 176..1003 1..828 4140 100 Plus
CG15012-RB 1079 CG15012-RB 176..1003 1..828 4140 100 Plus
CG15012.b 996 CG15012.b 176..996 1..826 4030 99.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:20:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4290594..4291010 826..410 2085 100 Minus
chr3L 24539361 chr3L 4291456..4291600 145..1 725 100 Minus
chr3L 24539361 chr3L 4291261..4291396 280..145 680 100 Minus
chr3L 24539361 chr3L 4291073..4291202 410..281 650 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:29:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4291206..4291624 828..410 2095 100 Minus
3L 28110227 3L 4292070..4292214 145..1 725 100 Minus
3L 28110227 3L 4291875..4292010 280..145 680 100 Minus
3L 28110227 3L 4291687..4291816 410..281 650 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4291206..4291624 828..410 2095 100 Minus
3L 28103327 3L 4292070..4292214 145..1 725 100 Minus
3L 28103327 3L 4291875..4292010 280..145 680 100 Minus
3L 28103327 3L 4291687..4291816 410..281 650 100 Minus
Blast to na_te.dros performed on 2019-03-16 23:20:11 has no hits.

GH03029.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:21:02 Download gff for GH03029.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4291073..4291202 281..410 100 <- Minus
chr3L 4291261..4291395 146..280 100 <- Minus
chr3L 4291456..4291600 1..145 100   Minus
chr3L 4290594..4291009 411..826 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:09:36 Download gff for GH03029.complete
Subject Subject Range Query Range Percent Splice Strand
CG15012-RB 1..459 62..520 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:17:44 Download gff for GH03029.complete
Subject Subject Range Query Range Percent Splice Strand
CG15012-RC 1..459 62..520 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:42:07 Download gff for GH03029.complete
Subject Subject Range Query Range Percent Splice Strand
CG15012-RC 1..459 62..520 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:08:55 Download gff for GH03029.complete
Subject Subject Range Query Range Percent Splice Strand
CG15012-RB 1..459 62..520 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:48:39 Download gff for GH03029.complete
Subject Subject Range Query Range Percent Splice Strand
CG15012-RC 1..459 62..520 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:42:15 Download gff for GH03029.complete
Subject Subject Range Query Range Percent Splice Strand
CG15012-RB 176..1001 1..826 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:17:44 Download gff for GH03029.complete
Subject Subject Range Query Range Percent Splice Strand
CG15012-RC 18..843 1..826 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:07 Download gff for GH03029.complete
Subject Subject Range Query Range Percent Splice Strand
CG15012-RC 33..858 1..826 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:08:55 Download gff for GH03029.complete
Subject Subject Range Query Range Percent Splice Strand
CG15012-RB 176..1001 1..826 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:48:39 Download gff for GH03029.complete
Subject Subject Range Query Range Percent Splice Strand
CG15012-RC 33..858 1..826 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:21:02 Download gff for GH03029.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4291687..4291816 281..410 100 <- Minus
3L 4291875..4292009 146..280 100 <- Minus
3L 4292070..4292214 1..145 100   Minus
3L 4291208..4291623 411..826 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:21:02 Download gff for GH03029.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4291687..4291816 281..410 100 <- Minus
3L 4291875..4292009 146..280 100 <- Minus
3L 4292070..4292214 1..145 100   Minus
3L 4291208..4291623 411..826 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:21:02 Download gff for GH03029.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4291687..4291816 281..410 100 <- Minus
3L 4291875..4292009 146..280 100 <- Minus
3L 4292070..4292214 1..145 100   Minus
3L 4291208..4291623 411..826 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:07 Download gff for GH03029.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4291208..4291623 411..826 100 <- Minus
arm_3L 4291687..4291816 281..410 100 <- Minus
arm_3L 4291875..4292009 146..280 100 <- Minus
arm_3L 4292070..4292214 1..145 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:40:55 Download gff for GH03029.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4291208..4291623 411..826 100 <- Minus
3L 4291687..4291816 281..410 100 <- Minus
3L 4291875..4292009 146..280 100 <- Minus
3L 4292070..4292214 1..145 100   Minus

GH03029.hyp Sequence

Translation from 61 to 519

> GH03029.hyp
MGVLDNIALHFTGDASRNRNTSIIAGLLFFAGWWVLIDAMSIDGKHQITT
GHVFIGIFGTISFCMVNAVKGEHISDENSSESGARIAKIWLLVGFLMGFA
SIIAAIWVMIDDFINNEKKDGWFGVALLMQNVFILFASLVYKFGRNEEEW
NE*

GH03029.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG15012-PC 152 CG15012-PC 1..152 1..152 797 100 Plus

GH03029.pep Sequence

Translation from 61 to 519

> GH03029.pep
MGVLDNIALHFTGDASRNRNTSIIAGLLFFAGWWVLIDAMSIDGKHQITT
GHVFIGIFGTISFCMVNAVKGEHISDENSSESGARIAKIWLLVGFLMGFA
SIIAAIWVMIDDFINNEKKDGWFGVALLMQNVFILFASLVYKFGRNEEEW
NE*

GH03029.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24739-PA 153 GF24739-PA 1..153 1..152 681 86.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14195-PA 152 GG14195-PA 1..152 1..152 747 94.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15534-PA 152 GH15534-PA 1..152 1..152 609 74.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG15012-PC 152 CG15012-PC 1..152 1..152 797 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16811-PA 152 GI16811-PA 1..152 1..152 617 75 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17974-PA 152 GL17974-PA 1..152 1..152 662 82.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13431-PA 152 GA13431-PA 1..152 1..152 662 82.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13986-PA 152 GM13986-PA 1..152 1..152 773 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13267-PA 152 GD13267-PA 1..152 1..152 773 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12557-PA 152 GJ12557-PA 1..152 1..152 616 75.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10565-PA 152 GK10565-PA 1..152 1..152 597 74.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20625-PA 152 GE20625-PA 1..152 1..152 731 93.4 Plus