Clone GH03051 Report

Search the DGRC for GH03051

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:30
Well:51
Vector:pOT2
Associated Gene/TranscriptGclm-RA
Protein status:GH03051.pep: gold
Preliminary Size:1300
Sequenced Size:1257

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4919 2001-01-01 Release 2 assignment
CG4919 2003-01-01 Sim4 clustering to Release 3
CG4919 2003-01-10 Blastp of sequenced clone
Gclm 2008-04-29 Release 5.5 accounting
Gclm 2008-08-15 Release 5.9 accounting
Gclm 2008-12-18 5.12 accounting

Clone Sequence Records

GH03051.complete Sequence

1257 bp (1257 high quality bases) assembled on 2003-01-10

GenBank Submission: BT003312

> GH03051.complete
CAGCAGAATTTATTTCTCTCTCCACACTTCGGTGCAAAGTGTATTTAAGT
GGCCAAGCGGTCGGTGCTCGAGAACACACGCGTTTCACACACCTGAGAGG
GCTGCAGTTGTCTGGACGGTCGCGAAAGTAGCAGATACCAAATAAGGAGA
ACACTTGTCACCATGATACCGACCATAACGAAGAAGTACCAGAACGTGGT
GATTAGCACGGGCAACATCATCGCCACGGAACTGGGACAGCGCAAATCGA
ACGAGGAGCTGTACGACGGCCTGAAGATAACGCTCCACACCGACTCGACT
GCGGAGCGCGTGGTGGTTGAAAAGGAGATCGACGAGCTGCATGGGCGGGT
GCAAAGGGCCACCCAGGAGTTGACCACCCGCTTGACGGAGAATGGACGGA
ATGAGATAAGTATCGGTGCCAAGATATTCCTCAATCGCCACTCCACAGAG
TCTGTGAATCAGGCGGTGGAGGAGCTGCTCCACATACTTAGTGTGACGCA
CGTGGACAATGTGGTGTTGGCCTACCACCCGAATGCGGTTGCCACCGCAA
CGCCGGTGGCCACAACCAAACCGCCCTGTTCCGAGGATTCCAACGTCAGC
AGGGCTACAAACTGGAGCCAGCGCAATGGAAAGGAAGGAGTGGCAGAGCT
GAAGGAACTGTACAAAACACTGGAGCAATATGCCCTCAAGCAGCAGATTA
CACAGCTGGGAATTGCCGATCTGGATGCGGCGGCGCTGGAGGAGCTACAC
AACAGCGCACAGGTTGTGCCCACAATTGCCCAGGTCAACCTGTCTACGTG
CTGCGTGGTGCCACCAGAACTGCAGGAGTTCTGCACCGCTCACGACATCC
AACTGAACACGCACAGCGATCCCGAGCTCCTGCTGCCCGTGGAGCAGTTC
GACGGACTGGTCCCTGGCTACACAATCGACTGGACACTGCGTTACCAGGT
GCATGTCCGCTGCCGGGGCGTTCTCACCGCCAAGGGCTACATCGTGGGCG
CGTCGAGGTCGAGCGTTTAGTTTTAAGTAACTCCCACATACAGATGCTAG
GCTATAGTTTTAATGTTTGTAATGTATGCTGTGTACAGTGGTGTACTTAT
TGTTTGTTATACAAAACCCAAATTGATGATTCGAAGCCGATCGATTCACT
TTGCTGTAAACGATTTTAAAATACTTATTCTGAACATAAAGCGTTTCAAA
AACGACAATTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

GH03051.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
Gclm-RA 1522 Gclm-RA 16..1230 1..1215 6075 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18508809..18510021 1213..1 5990 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:29:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22685298..22686512 1215..1 6075 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22426129..22427343 1215..1 6075 100 Minus
Blast to na_te.dros performed on 2019-03-16 01:10:13 has no hits.

GH03051.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:11:12 Download gff for GH03051.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18508809..18510021 1..1213 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:09:40 Download gff for GH03051.complete
Subject Subject Range Query Range Percent Splice Strand
Gclm-RA 1..858 163..1020 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:58:57 Download gff for GH03051.complete
Subject Subject Range Query Range Percent Splice Strand
Gclm-RA 1..858 163..1020 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:02:37 Download gff for GH03051.complete
Subject Subject Range Query Range Percent Splice Strand
Gclm-RA 1..858 163..1020 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:49:40 Download gff for GH03051.complete
Subject Subject Range Query Range Percent Splice Strand
Gclm-RA 1..858 163..1020 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:24:53 Download gff for GH03051.complete
Subject Subject Range Query Range Percent Splice Strand
Gclm-RA 1..858 163..1020 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:15:40 Download gff for GH03051.complete
Subject Subject Range Query Range Percent Splice Strand
Gclm-RA 16..1228 1..1213 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:58:57 Download gff for GH03051.complete
Subject Subject Range Query Range Percent Splice Strand
Gclm-RA 16..1228 1..1213 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:02:37 Download gff for GH03051.complete
Subject Subject Range Query Range Percent Splice Strand
Gclm-RA 1..1211 3..1213 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:49:40 Download gff for GH03051.complete
Subject Subject Range Query Range Percent Splice Strand
Gclm-RA 16..1228 1..1213 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:24:53 Download gff for GH03051.complete
Subject Subject Range Query Range Percent Splice Strand
Gclm-RA 1..1211 3..1213 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:11:12 Download gff for GH03051.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22685300..22686512 1..1213 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:11:12 Download gff for GH03051.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22685300..22686512 1..1213 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:11:12 Download gff for GH03051.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22685300..22686512 1..1213 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:02:37 Download gff for GH03051.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18511022..18512234 1..1213 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:21:14 Download gff for GH03051.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22426131..22427343 1..1213 100   Minus

GH03051.pep Sequence

Translation from 162 to 1019

> GH03051.pep
MIPTITKKYQNVVISTGNIIATELGQRKSNEELYDGLKITLHTDSTAERV
VVEKEIDELHGRVQRATQELTTRLTENGRNEISIGAKIFLNRHSTESVNQ
AVEELLHILSVTHVDNVVLAYHPNAVATATPVATTKPPCSEDSNVSRATN
WSQRNGKEGVAELKELYKTLEQYALKQQITQLGIADLDAAALEELHNSAQ
VVPTIAQVNLSTCCVVPPELQEFCTAHDIQLNTHSDPELLLPVEQFDGLV
PGYTIDWTLRYQVHVRCRGVLTAKGYIVGASRSSV*

GH03051.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18002-PA 294 GF18002-PA 1..293 1..284 1159 79.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12498-PA 285 GG12498-PA 1..284 1..284 1394 92.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21780-PA 294 GH21780-PA 1..290 1..284 1060 72 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
Gclm-PB 285 CG4919-PB 1..285 1..285 1455 100 Plus
Gclm-PA 285 CG4919-PA 1..285 1..285 1455 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21925-PA 295 GI21925-PA 1..292 1..284 1044 72.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24293-PA 225 GL24293-PA 52..212 124..282 644 76.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18525-PA 305 GA18525-PA 1..292 1..282 1122 74.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23630-PA 285 GM23630-PA 1..285 1..285 1448 96.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18440-PA 285 GD18440-PA 1..285 1..285 1469 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10701-PA 296 GJ10701-PA 1..291 1..282 1068 72 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11954-PA 294 GK11954-PA 1..292 1..284 1134 76.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24018-PA 285 GE24018-PA 1..284 1..284 1419 93.7 Plus

GH03051.hyp Sequence

Translation from 162 to 1019

> GH03051.hyp
MIPTITKKYQNVVISTGNIIATELGQRKSNEELYDGLKITLHTDSTAERV
VVEKEIDELHGRVQRATQELTTRLTENGRNEISIGAKIFLNRHSTESVNQ
AVEELLHILSVTHVDNVVLAYHPNAVATATPVATTKPPCSEDSNVSRATN
WSQRNGKEGVAELKELYKTLEQYALKQQITQLGIADLDAAALEELHNSAQ
VVPTIAQVNLSTCCVVPPELQEFCTAHDIQLNTHSDPELLLPVEQFDGLV
PGYTIDWTLRYQVHVRCRGVLTAKGYIVGASRSSV*

GH03051.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:32:59
Subject Length Description Subject Range Query Range Score Percent Strand
Gclm-PB 285 CG4919-PB 1..285 1..285 1455 100 Plus
Gclm-PA 285 CG4919-PA 1..285 1..285 1455 100 Plus