Clone GH03058 Report

Search the DGRC for GH03058

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:30
Well:58
Vector:pOT2
Associated Gene/TranscriptCG11796-RB
Protein status:GH03058.pep: gold
Preliminary Size:1646
Sequenced Size:1507

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11796 2001-01-01 Release 2 assignment
CG11796 2001-07-04 Blastp of sequenced clone
CG11796 2003-01-01 Sim4 clustering to Release 3
CG11796 2008-04-29 Release 5.5 accounting
CG11796 2008-08-15 Release 5.9 accounting
CG11796 2008-12-18 5.12 accounting

Clone Sequence Records

GH03058.complete Sequence

1507 bp (1507 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047523

> GH03058.complete
AGATCGACGGAACGAAGAAATCTATATCGCGTGCGAGGAGAGGATTTGCA
TAAATTGAGTCTGAGTGATAATGGTAAATGAGACGATGGGACATGTGGTG
GCTATGTGGTTATGTAACAGCCCTTTAGTGCGAATTAAATGGACTTTAAA
GAGTTCTCAAACAGGATTTATAACAAATACTGTCTAACAAAAGCGGATAA
ACCAATGATAATTATACAGACTTTCTAAGGATCCATTTCAAGGTGATCTA
ATTCTAATGACTTCTATTATTTCTTTTTAACTACCAACAGACCAGCTATA
CTGACAAAGGAACCAAACCTGAAGCCGGCAAATTTCTAAGCTTTGATCAC
TTAACCTTCTACGTTGGCAACGCCAAGCAGGCGGCCAGCTACTATACCAC
TCGACTGGGCTTCGAACCACTTGGCTATCAGGGATTAGACCGGGGAGCGA
CGCTTCGCCAAGCATGCCGTCCGCCAGAACAAGATCGTCTTTGTGTTCGT
CTCCGCCTACACGCCGGATGACGAGGAGCATGGACTCCACCTGATGCGCC
ACGGCGACGGTGTCAAGGATGTAGCCTTCGAAGTGGAGGATTTGAATGCC
ATTTTCACACTGGCCGTGTCCCGTGGGGCCGAAGTGGTCCGCGACATCTG
GGAGGAGAGCGATGATCAGGGATTCGTGAGATTCGCTACCATCAAGACGT
ACGGCGACACTACCCACACTTTCGTGGAGCGCAATGGGTACGCTGGAGAT
TTCCTGCCTGGATTCCAGCGGTCGCCCAAAGATGTCCTTCTAAACGGATT
GCCCTCCACCAAGCTGAACTTCATTGATCACGTGGTGGGCAACCAGCCGG
ATCTGCAGATGGAGAGCGTGGCCTCCTGGTACGAGAGAATCCTGCAGTTC
CACCGCTTCTGGTCCGTGGATGACTCGCAGATTCACACGGAATACTCCGC
CCTGCGGTCCATCGTGATGGCAAACTACGAGGAGACGGTGAAGATGCCGA
TCAATGAGCCAGCCAATGGGAAAAAGAAGTCACAGATCCAGGAGTACGTG
GAGTACTACGGCGGCGGTGGTGTCCAGCACATTGCTCTTAATACGGATGA
CATTATCGAGGCGGTGAGCAACCTAAAGGCTCGAGGAACCGAGTTCCTGA
CCATCCCATCCTCGTACTACGAGATCCTTCAGGAGCAGCTCTCGCACAGC
CGCACCAAGATCAAGGAGGACATGGAGGTCTTGAAGAAGTTGAACATTTT
GATTGACTTCGACGAGAACGGATATCTGCTGCAGATCTTCACAAAGAACT
GCCAGGATAGACCGACCCTCTTCCTGGAAGTTATCCAACGCTACAATCAC
AATGGATTTGGCGCTGGCAACTTTAAGTCCTTGTTCACGGCCATTGAAAT
TGAACAAGCCAAGCGAGGAAACTTGTGAATCAAATGTGATCAAATTGAGA
ACTAACAAAATCAATAATAAATGAAATGGTCTAAACTGAAAAAAAAAAAA
AAAAAAA

GH03058.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-RB 1516 CG11796-RB 23..1516 1..1492 7415 99.8 Plus
CG11796-RA 1301 CG11796-RA 97..1301 290..1492 5970 99.8 Plus
CG5872-RA 2012 CG5872-RA 1694..1833 1493..1354 700 100 Minus
CG5872-RA 2012 CG5872-RA 1897..2012 1354..1239 580 100 Minus
CG11796-RA 1301 CG11796-RA 25..97 1..73 365 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20427373..20428028 1354..699 3280 100 Minus
chr3L 24539361 chr3L 20428086..20428469 699..318 1855 99.5 Minus
chr3L 24539361 chr3L 20428537..20428853 317..1 1585 100 Minus
chr3L 24539361 chr3L 20427175..20427309 1488..1354 675 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:29:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20438364..20439019 1354..699 3280 100 Minus
3L 28110227 3L 20439077..20439460 699..318 1855 99.5 Minus
3L 28110227 3L 20439528..20439844 317..1 1585 100 Minus
3L 28110227 3L 20438161..20438300 1493..1354 700 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20431464..20432119 1354..699 3280 100 Minus
3L 28103327 3L 20432177..20432560 699..318 1865 99.4 Minus
3L 28103327 3L 20432628..20432944 317..1 1585 100 Minus
3L 28103327 3L 20431261..20431400 1493..1354 700 100 Minus
Blast to na_te.dros performed on 2019-03-16 06:52:50 has no hits.

GH03058.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:53:33 Download gff for GH03058.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20427175..20427309 1354..1488 100 <- Minus
chr3L 20427374..20428027 700..1353 100 <- Minus
chr3L 20428086..20428469 318..699 99 <- Minus
chr3L 20428537..20428853 1..317 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:09:45 Download gff for GH03058.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 1..1143 289..1428 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:30:05 Download gff for GH03058.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 1..1143 289..1428 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:45:22 Download gff for GH03058.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 1..1143 289..1428 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:03:33 Download gff for GH03058.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 1..1143 289..1428 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:22:12 Download gff for GH03058.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 1..1143 289..1428 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:30:45 Download gff for GH03058.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RB 23..1512 1..1488 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:30:05 Download gff for GH03058.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RB 23..1512 1..1488 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:45:22 Download gff for GH03058.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RB 29..1518 1..1488 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:03:33 Download gff for GH03058.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RB 23..1512 1..1488 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:22:12 Download gff for GH03058.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RB 29..1518 1..1488 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:53:33 Download gff for GH03058.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20438166..20438300 1354..1488 100 <- Minus
3L 20438365..20439018 700..1353 100 <- Minus
3L 20439077..20439460 318..699 99 <- Minus
3L 20439528..20439844 1..317 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:53:33 Download gff for GH03058.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20438166..20438300 1354..1488 100 <- Minus
3L 20438365..20439018 700..1353 100 <- Minus
3L 20439077..20439460 318..699 99 <- Minus
3L 20439528..20439844 1..317 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:53:33 Download gff for GH03058.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20438166..20438300 1354..1488 100 <- Minus
3L 20438365..20439018 700..1353 100 <- Minus
3L 20439077..20439460 318..699 99 <- Minus
3L 20439528..20439844 1..317 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:45:22 Download gff for GH03058.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20431266..20431400 1354..1488 100 <- Minus
arm_3L 20431465..20432118 700..1353 100 <- Minus
arm_3L 20432177..20432560 318..699 99 <- Minus
arm_3L 20432628..20432944 1..317 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:41:38 Download gff for GH03058.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20431465..20432118 700..1353 100 <- Minus
3L 20432177..20432560 318..699 99 <- Minus
3L 20432628..20432944 1..317 100   Minus
3L 20431266..20431400 1354..1488 100 <- Minus

GH03058.pep Sequence

Translation from 543 to 1427

> GH03058.pep
MRHGDGVKDVAFEVEDLNAIFTLAVSRGAEVVRDIWEESDDQGFVRFATI
KTYGDTTHTFVERNGYAGDFLPGFQRSPKDVLLNGLPSTKLNFIDHVVGN
QPDLQMESVASWYERILQFHRFWSVDDSQIHTEYSALRSIVMANYEETVK
MPINEPANGKKKSQIQEYVEYYGGGGVQHIALNTDDIIEAVSNLKARGTE
FLTIPSSYYEILQEQLSHSRTKIKEDMEVLKKLNILIDFDENGYLLQIFT
KNCQDRPTLFLEVIQRYNHNGFGAGNFKSLFTAIEIEQAKRGNL*

GH03058.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24132-PA 402 GF24132-PA 109..402 1..294 1515 94.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13309-PA 380 GG13309-PA 87..380 1..294 1570 99 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17018-PA 387 GH17018-PA 94..387 1..294 1463 91.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
Hpd-PB 294 CG11796-PB 1..294 1..294 1532 100 Plus
Hpd-PA 380 CG11796-PA 87..380 1..294 1532 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11911-PA 402 GI11911-PA 109..402 1..294 1487 93.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12777-PA 350 GL12777-PA 57..350 1..294 1503 94.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11203-PA 381 GA11203-PA 88..381 1..294 1499 93.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22213-PA 380 GM22213-PA 87..380 1..294 1573 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12185-PA 380 GD12185-PA 87..380 1..294 1571 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13785-PA 380 GJ13785-PA 87..380 1..294 1490 93.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12342-PA 380 GK12342-PA 87..380 1..294 1476 92.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22742-PA 380 GE22742-PA 87..380 1..294 1566 99 Plus

GH03058.hyp Sequence

Translation from 543 to 1427

> GH03058.hyp
MRHGDGVKDVAFEVEDLNAIFTLAVSRGAEVVRDIWEESDDQGFVRFATI
KTYGDTTHTFVERNGYAGDFLPGFQRSPKDVLLNGLPSTKLNFIDHVVGN
QPDLQMESVASWYERILQFHRFWSVDDSQIHTEYSALRSIVMANYEETVK
MPINEPANGKKKSQIQEYVEYYGGGGVQHIALNTDDIIEAVSNLKARGTE
FLTIPSSYYEILQEQLSHSRTKIKEDMEVLKKLNILIDFDENGYLLQIFT
KNCQDRPTLFLEVIQRYNHNGFGAGNFKSLFTAIEIEQAKRGNL*

GH03058.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-PB 294 CG11796-PB 1..294 1..294 1532 100 Plus
CG11796-PA 380 CG11796-PA 87..380 1..294 1532 100 Plus