Clone GH03119 Report

Search the DGRC for GH03119

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:31
Well:19
Vector:pOT2
Associated Gene/Transcriptund-RA
Protein status:GH03119.pep: gold
Preliminary Size:1640
Sequenced Size:1643

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4008 2001-01-01 Release 2 assignment
CG4008 2001-07-04 Blastp of sequenced clone
CG4008 2003-01-01 Sim4 clustering to Release 3
und 2008-04-29 Release 5.5 accounting
und 2008-08-15 Release 5.9 accounting
und 2008-12-18 5.12 accounting

Clone Sequence Records

GH03119.complete Sequence

1643 bp (1643 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047525

> GH03119.complete
TCCACAGCACGTTTTACAGCACTGGCCTCTGACACCTCGTGTTTTTGTTC
TTTTCTCCGCATCGCCATCGCCAGGCAAGAGTGCGCGCTACATTTTCGTT
TATTTCATCGTTCAGCCAGCAACCAAGGCACTGCGAAATGTCTGCAACCG
AGACTCTGAATGTGGAGGCGGCAACGCCCGAGATCGGCGAGGAGGTCAAG
AAACAAAAGAAGCCCAAGCCGAACAACAAGAAGCTCCGCCAAGAAGCGGC
AGCCAAAATAGCCTCCGGAGAAGGCGGCGACGAGGAGCTGACCACAAACG
GAGATGCCAAACCGGCAACACCGGCCGCTCAGCCGGCAAAGAAGAAGGGG
AACAAGGGCAAGAAAAGCGGTCAGACTGATCCGCCCACCATACCCATTGC
TAAGCTTTATCCGGACGGCAACTTCCCCGAGGGCGAGATCGTGGAGCACC
CCACGCCCAAGGATATGCCCGACGATCGTACGGCCAAGGACCGATTCACA
TCGGAGGAGAAGCGTGCTCTGGACCGTATCAACACGGACATCTACCAGGA
ATTGCGCCAGGCGGCTGAGGCCCATCGTCAGACGCGTCAGTATATGCAGC
GCTACATTAAGCCGGGCATGACCATGATCCAAATCTGCGAGGAGCTGGAG
AACACTGCTCGGCGCCTGATCGGCGAAAATGGTCTGGAGGCTGGTTTGGC
CTTCCCGACTGGTTGCTCTCTTAACCATTGCGCCGCCCACTACACGCCCA
ATGCCGGAGACCCCACTGTACTGCAGTACGACGATGTGTGCAAGATTGAT
TTTGGTACCCATATCAAGGGGCGGATCATTGATTGCGCCTTCACCCTGAC
CTTCAACAACAAGTACGACAAGTTGCTGCAGGCCGTCAAGGAGGCCACCA
ACACGGGCATCAGAGAGGCGGGCATCGATGTGCGCCTATGCGACATCGGC
GCCGCTATCCAGGAGGTCATGGAGTCGTACGAGATCGAGTTGGACGGCAA
AACATATCCCATCAAGGCGATTCGCAACTTAAATGGACACTCCATCAGCC
CGTACCGCATTCATGCTGGAAAAACGGTGCCCATTGTGAAAGGCGGAGAG
TCCACTCGCATGGAGGAGGATGAATTCTACGCCATTGAGACGTTCGGCTC
GACGGGTCGCGGTCTGGTCCATGACGATATGGACTGCTCGCATTACATGA
AGAACTTTGATCTGCCGTTTGTGCCGCTGCGCCTGCAGTCATCCAAGCAG
CTGCTTGGCACCATCAACAAAAACTTCGGCACCCTGGCCTTCTGCAAGCG
TTGGCTGGACCGCGCCGGTGCCACGAAGTACCAGATGGCTCTCAAGGATC
TGTGCGACAAGGGCATTGTGGAGGCTTATCCGCCGTTGTGCGACATTAAG
GGCTGCTACACGGCTCAGTACGAACACACAATTATGCTGCGACCCACCTG
CAAAGAAGTCGTTTCCCGTGGCGACGACTACTAGTGGGATGAGGAACTGG
ACAGTGACCGATTTTCGGCGATGTATGGCTTGCATTATATACGGTTTTTG
ATATAAGTTCATTCTATTGTTGATTTTTTGTGAGCATGCGCCAACCGAAT
TATATATACAATGTATTATGCTCAGAAAAAAAAAAAAAAAAAA

GH03119.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
und-RA 1842 und-RA 148..1774 1..1627 8135 100 Plus
und.b 1710 und.b 66..1692 1..1627 8135 100 Plus
und.c 1789 und.c 148..1771 1..1627 8065 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9762673..9763488 242..1057 4080 100 Plus
chr2L 23010047 chr2L 9763609..9764177 1057..1625 2845 100 Plus
chr2L 23010047 chr2L 9762331..9762573 1..243 1215 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:29:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9763834..9764649 242..1057 4080 100 Plus
2L 23513712 2L 9764770..9765340 1057..1627 2855 100 Plus
2L 23513712 2L 9763492..9763734 1..243 1215 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9763834..9764649 242..1057 4080 100 Plus
2L 23513712 2L 9764770..9765340 1057..1627 2855 100 Plus
2L 23513712 2L 9763492..9763734 1..243 1215 100 Plus
Blast to na_te.dros performed on 2019-03-15 19:10:16 has no hits.

GH03119.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:11:09 Download gff for GH03119.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9762331..9762573 1..243 100 -> Plus
chr2L 9762675..9763487 244..1056 100 -> Plus
chr2L 9763609..9764177 1057..1625 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:09:59 Download gff for GH03119.complete
Subject Subject Range Query Range Percent Splice Strand
und-RA 1..1347 138..1484 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:29:55 Download gff for GH03119.complete
Subject Subject Range Query Range Percent Splice Strand
und-RA 1..1347 138..1484 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:44:37 Download gff for GH03119.complete
Subject Subject Range Query Range Percent Splice Strand
und-RA 1..1347 138..1484 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:03:21 Download gff for GH03119.complete
Subject Subject Range Query Range Percent Splice Strand
und-RA 1..1347 138..1484 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:12:29 Download gff for GH03119.complete
Subject Subject Range Query Range Percent Splice Strand
und-RA 1..1347 138..1484 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:30:31 Download gff for GH03119.complete
Subject Subject Range Query Range Percent Splice Strand
und-RA 148..1772 1..1625 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:29:54 Download gff for GH03119.complete
Subject Subject Range Query Range Percent Splice Strand
und-RA 148..1772 1..1625 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:44:37 Download gff for GH03119.complete
Subject Subject Range Query Range Percent Splice Strand
und-RA 148..1772 1..1625 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:03:21 Download gff for GH03119.complete
Subject Subject Range Query Range Percent Splice Strand
und-RA 148..1772 1..1625 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:12:29 Download gff for GH03119.complete
Subject Subject Range Query Range Percent Splice Strand
und-RA 124..1748 1..1625 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:11:09 Download gff for GH03119.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9763492..9763734 1..243 100 -> Plus
2L 9763836..9764648 244..1056 100 -> Plus
2L 9764770..9765338 1057..1625 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:11:09 Download gff for GH03119.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9763492..9763734 1..243 100 -> Plus
2L 9763836..9764648 244..1056 100 -> Plus
2L 9764770..9765338 1057..1625 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:11:09 Download gff for GH03119.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9763492..9763734 1..243 100 -> Plus
2L 9763836..9764648 244..1056 100 -> Plus
2L 9764770..9765338 1057..1625 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:44:37 Download gff for GH03119.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9763492..9763734 1..243 100 -> Plus
arm_2L 9763836..9764648 244..1056 100 -> Plus
arm_2L 9764770..9765338 1057..1625 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:41:24 Download gff for GH03119.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9763492..9763734 1..243 100 -> Plus
2L 9763836..9764648 244..1056 100 -> Plus
2L 9764770..9765338 1057..1625 100   Plus

GH03119.hyp Sequence

Translation from 137 to 1483

> GH03119.hyp
MSATETLNVEAATPEIGEEVKKQKKPKPNNKKLRQEAAAKIASGEGGDEE
LTTNGDAKPATPAAQPAKKKGNKGKKSGQTDPPTIPIAKLYPDGNFPEGE
IVEHPTPKDMPDDRTAKDRFTSEEKRALDRINTDIYQELRQAAEAHRQTR
QYMQRYIKPGMTMIQICEELENTARRLIGENGLEAGLAFPTGCSLNHCAA
HYTPNAGDPTVLQYDDVCKIDFGTHIKGRIIDCAFTLTFNNKYDKLLQAV
KEATNTGIREAGIDVRLCDIGAAIQEVMESYEIELDGKTYPIKAIRNLNG
HSISPYRIHAGKTVPIVKGGESTRMEEDEFYAIETFGSTGRGLVHDDMDC
SHYMKNFDLPFVPLRLQSSKQLLGTINKNFGTLAFCKRWLDRAGATKYQM
ALKDLCDKGIVEAYPPLCDIKGCYTAQYEHTIMLRPTCKEVVSRGDDY*

GH03119.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
und-PC 448 CG4008-PC 1..448 1..448 2378 100 Plus
und-PB 448 CG4008-PB 1..448 1..448 2378 100 Plus
und-PA 448 CG4008-PA 1..448 1..448 2378 100 Plus
CG10576-PD 391 CG10576-PD 58..333 171..443 233 26.9 Plus
CG10576-PC 391 CG10576-PC 58..333 171..443 233 26.9 Plus

GH03119.pep Sequence

Translation from 137 to 1483

> GH03119.pep
MSATETLNVEAATPEIGEEVKKQKKPKPNNKKLRQEAAAKIASGEGGDEE
LTTNGDAKPATPAAQPAKKKGNKGKKSGQTDPPTIPIAKLYPDGNFPEGE
IVEHPTPKDMPDDRTAKDRFTSEEKRALDRINTDIYQELRQAAEAHRQTR
QYMQRYIKPGMTMIQICEELENTARRLIGENGLEAGLAFPTGCSLNHCAA
HYTPNAGDPTVLQYDDVCKIDFGTHIKGRIIDCAFTLTFNNKYDKLLQAV
KEATNTGIREAGIDVRLCDIGAAIQEVMESYEIELDGKTYPIKAIRNLNG
HSISPYRIHAGKTVPIVKGGESTRMEEDEFYAIETFGSTGRGLVHDDMDC
SHYMKNFDLPFVPLRLQSSKQLLGTINKNFGTLAFCKRWLDRAGATKYQM
ALKDLCDKGIVEAYPPLCDIKGCYTAQYEHTIMLRPTCKEVVSRGDDY*

GH03119.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22806-PA 444 GF22806-PA 1..444 1..448 2012 92.2 Plus
Dana\GF21352-PA 460 GF21352-PA 65..460 56..448 1459 68.2 Plus
Dana\GF10449-PA 394 GF10449-PA 58..333 171..443 242 27.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10053-PA 448 GG10053-PA 1..448 1..448 2381 98.4 Plus
Dere\GG14116-PA 391 GG14116-PA 58..326 171..436 238 28.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH25144-PA 458 GH25144-PA 1..458 1..448 2008 85.4 Plus
Dgri\GH15010-PA 394 GH15010-PA 58..333 171..443 239 27.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
und-PC 448 CG4008-PC 1..448 1..448 2378 100 Plus
und-PB 448 CG4008-PB 1..448 1..448 2378 100 Plus
und-PA 448 CG4008-PA 1..448 1..448 2378 100 Plus
CG10576-PD 391 CG10576-PD 58..333 171..443 233 26.9 Plus
CG10576-PC 391 CG10576-PC 58..333 171..443 233 26.9 Plus
CG10576-PA 391 CG10576-PA 58..333 171..443 233 26.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20096-PA 449 GI20096-PA 1..449 1..448 2041 89.1 Plus
Dmoj\GI13173-PA 390 GI13173-PA 58..324 171..436 230 28.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18932-PA 429 GL18932-PA 1..429 1..448 1802 80.7 Plus
Dper\GL16317-PA 391 GL16317-PA 58..333 171..443 238 28.3 Plus
Dper\GL24799-PA 318 GL24799-PA 11..260 194..443 190 26.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17851-PA 461 GA17851-PA 1..461 1..448 2037 87.4 Plus
Dpse\GA10407-PA 391 GA10407-PA 58..333 171..443 238 28.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17682-PA 448 GM17682-PA 1..448 1..448 2413 100 Plus
Dsec\GM13901-PA 391 GM13901-PA 58..326 171..436 237 28.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23627-PA 448 GD23627-PA 1..448 1..448 2413 100 Plus
Dsim\GD13178-PA 391 GD13178-PA 58..326 171..436 236 28.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13491-PA 456 GJ13491-PA 1..456 1..448 2023 86.2 Plus
Dvir\GJ11948-PA 394 GJ11948-PA 17..333 135..443 236 25.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24191-PA 456 GK24191-PA 5..456 3..448 2026 88.9 Plus
Dwil\GK16873-PA 399 GK16873-PA 58..331 171..443 242 28.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18867-PA 448 GE18867-PA 1..448 1..448 2370 98 Plus
Dyak\GE20541-PA 391 GE20541-PA 58..326 171..436 239 28.7 Plus