Clone GH03163 Report

Search the DGRC for GH03163

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:31
Well:63
Vector:pOT2
Associated Gene/Transcriptcindr-RH
Protein status:GH03163.pep: gold
Preliminary Size:3441
Sequenced Size:2303

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31012 2000-02-14 Blastp of sequenced clone
CG1408 2001-01-01 Release 2 assignment
CG15544 2001-01-01 Release 2 assignment
CG31012 2003-01-01 Sim4 clustering to Release 3
CG31012 2008-04-29 Release 5.5 accounting
CG31012 2008-08-15 Release 5.9 accounting
CG31012 2008-12-18 5.12 accounting

Clone Sequence Records

GH03163.complete Sequence

2303 bp (2303 high quality bases) assembled on 2000-02-14

GenBank Submission: AF145614

> GH03163.complete
ATTTACGTTATTGAAATATTTTCGTCGTCGCGGCAAAACGGCGAGGAGTA
ATCGGTAATCATTTTTCTTGGCTCACTGTGTTGCACCGATCAACGAGCCA
CCGAGTGCCACACAGATTACGCAGAATCAGAGGAAGGTCAGCAACACCGC
CAGCACCACCAGCCACATGACCACAACGAACTCAAGCAATTCCAGCACCA
CCTCGGTGACCACGCAGCAGCAGAAGGAGCAGATCGGAGGCAGTTCCTCC
ACCACATCGAAGGTGTACATCAAGAAGACCGGGAGCAGTAGCAATAGCAC
TACCAGCAGCACCACCACAGCTTCCTCTTCGGCGGGTCGCAAGGAGAGCT
TTGGTTCCCGTGACTCCCTGAACGATATCCTTAGTGAAACGGGTCTGCCC
ACCGGCAATGTGGCTGCCCAAAGGAAATCCCTGGAGAACAAGAACCTGGA
CCTGACTAAGCCACCTGGAGTGGGAGCATCAGTGTCCATTGGACAGCAGC
GGAGCAGCACCTCTAGTGCCACCACCTCCTCAGCCACTACAGTAGCCACT
GGACTAACCTCATCATCAGTGAGCAAGTCCATGGAGAACATGCTGGACGA
GAAGGTCAAGTCGCCACCACCGCCGGTGCTCAGCAAGAAGCCCAGTGTGC
CGCTCAAGAAAACTCCCACCGGCGGAGTTCCTATGACTGGTAACCTTTTG
GGCGGCAAGAAAAAGAATACCGAGGGAAAGCTCACCACTGCCGTGTCCCA
TGATTTGGCGGATGGTCTTGCGGCCAGCAAGATGCTTTCAGGTGCTAATC
AACTACCTGAATCTGGAGCAGCTGGCAATGTGGTGATCCGGAGAGCTGCC
ACGATTGCAGTGGAGGATACAGATTTCGATCGCGTGGAGAGGGCTTCCAT
ACTCACGGATATGCGGCAAGGAAGGGTCAAGGCGCCAAAGAGACGTCCAC
CATCGGCGGCTATCAATGTGCTGGGCGAAAGTAATAACAATTCCGTATAT
GTAAATGGCAGTGGAATGTCCGGATCTGGTGGAGCAGGAAGTGCCAGTGA
GTTGAGTGAAGATGGCGGTGCTGGAGGGAAGACTTCTGATGACAATTCCA
CCGGCGAGGAACCACAGTTGGCCAAACCCAAGCCACGTGAGTGGGAGAAG
AAGAAGGCGCCTTGGATGGAGGAGCTGAAGGCCTCGCAGGTCACCAGGAA
AAAGACCTCACCCAGTGTGGAGCCACGAGGAGCTTCGGTGGCCGAAAGGA
CATCCAAACTCTTTGCGGCCGAGCAAGCTGTCAGCAGCAATAGCAGCAGT
ATCACAACGAAAGTCCAATCTTCAGCGGTGACCTCCTCCATGTTTGTGGA
GAACTCAACGACCAGCAGCTCGGTGATCACCAGTAGCTCCCACACCACCA
CCAACGATGCCATCATGTCGCGCAGCTTGTCGGCTGCCAAAGTCCAAACC
GCCAGCAGCGACGAGGAGACGAGAGCCACAAGGCCAAACAGTCTAGCTAT
ACGAAATCAACGAAGTGTTTCGCCTCTGGTAAAGAGCTCCAATGCCAGCA
GCTCGCAGTCCCAGGAGGAGAAGCCCACCAGCCAGCTGAACAACCACCAG
GATGCCAGTTCCTCAAGGGTGGCCCAATTGGAGCAACGGGTGGATAAGCT
GGAGGGGCTGGTGCTAAACCAACAGCGAACCATTGAGGAGCTGGTAAATG
CCCTGAAATCGGAAGCTGAACGCGTCAAGATTTTGAGGAGCGAACTGGAC
AAATACGCGCAGTGCGTGACGCAAGTTTGAGCCTAGTTGAATCGCCTTTT
AGCTAGCTTTTGAATACTTGATTTTTAGCGTCTGCTGAACTCTACAATAT
ACCCAGGCCTAAAAGCGTAGAACGTAGTAGAGTAGAGACCGAACCCAAGA
CAATCCCAAATATCTGTACTCTGTGTTCTGTACTTATATACCAGAATGAT
CTATCCAAAACCACTAGCGATCAATCGTTTTTGCATGCCAAAACCGTTTC
GTTTTTCGCTACAATACTTTGTATTCCCCTGTATATCTGATAATTTCGAT
AAGTATTTTTTATACACTCGTACATTCCGAAGAGCAAAAGGGTGTGATTT
CTTTTAGCTGCTTTCGATTGCGATTTGTTTTGTTTATTCGATTTATGATT
ATTTTTTAAAGATGTATTAAAGTTATGAGTAAACTGTACTATAAACTATA
TACCTAACGAGAGAGAAACATACAAAGTTCGATGGAGTCGATGATGATGC
CTAAAACTTAAGCAATACCAATAAATAATGCAAATAAAAAAAAAAAAAAA
AAA

GH03163.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG31012-RB 2309 CG31012-RB 23..2309 1..2287 11435 100 Plus
CG31012.d 3219 CG31012.d 1005..3213 80..2288 11045 100 Plus
CG31012-RC 4119 CG31012-RC 1753..3961 80..2288 11045 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26647393..26648989 689..2285 7985 100 Plus
chr3R 27901430 chr3R 26646716..26647327 80..691 3060 100 Plus
chr3R 27901430 chr3R 26644934..26645017 1..84 405 98.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:29:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30824954..30826553 689..2288 8000 100 Plus
3R 32079331 3R 30824277..30824888 80..691 3060 100 Plus
3R 32079331 3R 30822495..30822578 1..84 405 98.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30565785..30567384 689..2288 8000 100 Plus
3R 31820162 3R 30565108..30565719 80..691 3060 100 Plus
3R 31820162 3R 30563326..30563409 1..84 405 98.8 Plus
Blast to na_te.dros performed 2019-03-16 09:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 8915..8990 2116..2038 117 64.6 Minus
roo 9092 roo DM_ROO 9092bp 1092..1142 273..321 114 74.5 Plus

GH03163.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:54:10 Download gff for GH03163.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26644934..26645013 1..80 100 -> Plus
chr3R 26646717..26647325 81..689 100 -> Plus
chr3R 26647394..26648989 690..2285 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:10:01 Download gff for GH03163.complete
Subject Subject Range Query Range Percent Splice Strand
CG31012-RD 208..1908 80..1780 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:41:27 Download gff for GH03163.complete
Subject Subject Range Query Range Percent Splice Strand
cindr-RD 208..1908 80..1780 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:59:42 Download gff for GH03163.complete
Subject Subject Range Query Range Percent Splice Strand
cindr-RC 949..2649 80..1780 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:19:46 Download gff for GH03163.complete
Subject Subject Range Query Range Percent Splice Strand
CG31012-RD 208..1908 80..1780 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:47:12 Download gff for GH03163.complete
Subject Subject Range Query Range Percent Splice Strand
cindr-RC 949..2649 80..1780 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:47:23 Download gff for GH03163.complete
Subject Subject Range Query Range Percent Splice Strand
CG31012-RB 23..2307 1..2285 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:41:27 Download gff for GH03163.complete
Subject Subject Range Query Range Percent Splice Strand
cindr-RB 23..2307 1..2285 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:42 Download gff for GH03163.complete
Subject Subject Range Query Range Percent Splice Strand
cindr-RB 23..2307 1..2285 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:19:46 Download gff for GH03163.complete
Subject Subject Range Query Range Percent Splice Strand
CG31012-RB 23..2307 1..2285 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:47:12 Download gff for GH03163.complete
Subject Subject Range Query Range Percent Splice Strand
cindr-RB 23..2307 1..2285 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:54:10 Download gff for GH03163.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30822495..30822574 1..80 100 -> Plus
3R 30824278..30824886 81..689 100 -> Plus
3R 30824955..30826550 690..2285 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:54:10 Download gff for GH03163.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30822495..30822574 1..80 100 -> Plus
3R 30824278..30824886 81..689 100 -> Plus
3R 30824955..30826550 690..2285 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:54:10 Download gff for GH03163.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30822495..30822574 1..80 100 -> Plus
3R 30824278..30824886 81..689 100 -> Plus
3R 30824955..30826550 690..2285 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:42 Download gff for GH03163.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26648217..26648296 1..80 100 -> Plus
arm_3R 26650000..26650608 81..689 100 -> Plus
arm_3R 26650677..26652272 690..2285 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:54:43 Download gff for GH03163.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30565109..30565717 81..689 100 -> Plus
3R 30565786..30567381 690..2285 100   Plus
3R 30563326..30563405 1..80 100 -> Plus

GH03163.hyp Sequence

Translation from 166 to 1779

> GH03163.hyp
MTTTNSSNSSTTSVTTQQQKEQIGGSSSTTSKVYIKKTGSSSNSTTSSTT
TASSSAGRKESFGSRDSLNDILSETGLPTGNVAAQRKSLENKNLDLTKPP
GVGASVSIGQQRSSTSSATTSSATTVATGLTSSSVSKSMENMLDEKVKSP
PPPVLSKKPSVPLKKTPTGGVPMTGNLLGGKKKNTEGKLTTAVSHDLADG
LAASKMLSGANQLPESGAAGNVVIRRAATIAVEDTDFDRVERASILTDMR
QGRVKAPKRRPPSAAINVLGESNNNSVYVNGSGMSGSGGAGSASELSEDG
GAGGKTSDDNSTGEEPQLAKPKPREWEKKKAPWMEELKASQVTRKKTSPS
VEPRGASVAERTSKLFAAEQAVSSNSSSITTKVQSSAVTSSMFVENSTTS
SSVITSSSHTTTNDAIMSRSLSAAKVQTASSDEETRATRPNSLAIRNQRS
VSPLVKSSNASSSQSQEEKPTSQLNNHQDASSSRVAQLEQRVDKLEGLVL
NQQRTIEELVNALKSEAERVKILRSELDKYAQCVTQV*

GH03163.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
cindr-PJ 941 CG31012-PJ 405..941 1..537 2621 100 Plus
cindr-PI 537 CG31012-PI 1..537 1..537 2621 100 Plus
cindr-PH 537 CG31012-PH 1..537 1..537 2621 100 Plus
cindr-PG 694 CG31012-PG 158..694 1..537 2621 100 Plus
cindr-PF 692 CG31012-PF 156..692 1..537 2621 100 Plus

GH03163.pep Sequence

Translation from 166 to 1779

> GH03163.pep
MTTTNSSNSSTTSVTTQQQKEQIGGSSSTTSKVYIKKTGSSSNSTTSSTT
TASSSAGRKESFGSRDSLNDILSETGLPTGNVAAQRKSLENKNLDLTKPP
GVGASVSIGQQRSSTSSATTSSATTVATGLTSSSVSKSMENMLDEKVKSP
PPPVLSKKPSVPLKKTPTGGVPMTGNLLGGKKKNTEGKLTTAVSHDLADG
LAASKMLSGANQLPESGAAGNVVIRRAATIAVEDTDFDRVERASILTDMR
QGRVKAPKRRPPSAAINVLGESNNNSVYVNGSGMSGSGGAGSASELSEDG
GAGGKTSDDNSTGEEPQLAKPKPREWEKKKAPWMEELKASQVTRKKTSPS
VEPRGASVAERTSKLFAAEQAVSSNSSSITTKVQSSAVTSSMFVENSTTS
SSVITSSSHTTTNDAIMSRSLSAAKVQTASSDEETRATRPNSLAIRNQRS
VSPLVKSSNASSSQSQEEKPTSQLNNHQDASSSRVAQLEQRVDKLEGLVL
NQQRTIEELVNALKSEAERVKILRSELDKYAQCVTQV*

GH03163.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22925-PA 884 GF22925-PA 357..871 18..532 1704 78.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11778-PA 895 GG11778-PA 367..882 17..532 2149 96.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14216-PA 951 GH14216-PA 397..951 32..537 1109 53.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
cindr-PJ 941 CG31012-PJ 405..941 1..537 2621 100 Plus
cindr-PI 537 CG31012-PI 1..537 1..537 2621 100 Plus
cindr-PH 537 CG31012-PH 1..537 1..537 2621 100 Plus
cindr-PG 694 CG31012-PG 158..694 1..537 2621 100 Plus
cindr-PF 692 CG31012-PF 156..692 1..537 2621 100 Plus
cindr-PE 848 CG31012-PE 312..848 1..537 2621 100 Plus
cindr-PB 537 CG31012-PB 1..537 1..537 2621 100 Plus
cindr-PD 635 CG31012-PD 99..635 1..537 2621 100 Plus
cindr-PC 882 CG31012-PC 346..882 1..537 2621 100 Plus
cindr-PA 545 CG31012-PA 1..536 1..536 2590 99.3 Plus
Muc68D-PB 1514 CG6004-PB 539..1019 2..488 217 21.8 Plus
Muc68D-PB 1514 CG6004-PB 403..880 2..483 201 20.9 Plus
Muc68D-PB 1514 CG6004-PB 594..1081 2..483 190 20 Plus
Muc68D-PB 1514 CG6004-PB 336..836 2..487 187 21.3 Plus
Muc68D-PB 1514 CG6004-PB 369..846 2..483 183 21.3 Plus
Muc68D-PB 1514 CG6004-PB 302..780 2..483 178 20 Plus
Muc68Ca-PA 3135 CG18331-PA 989..1453 2..490 176 20.7 Plus
Muc68Ca-PA 3135 CG18331-PA 659..1133 5..490 172 21.6 Plus
Muc68Ca-PA 3135 CG18331-PA 1379..1853 5..490 170 21.5 Plus
Muc68Ca-PA 3135 CG18331-PA 589..1053 2..490 169 21.3 Plus
Muc68Ca-PA 3135 CG18331-PA 700..1213 5..490 168 21.2 Plus
Muc68Ca-PA 3135 CG18331-PA 1469..1933 2..490 168 21.4 Plus
Mur89F-PC 2158 CG4090-PC 548..1008 2..486 168 21 Plus
Mur89F-PB 2159 CG4090-PB 548..1008 2..486 168 21 Plus
Muc68Ca-PA 3135 CG18331-PA 380..893 5..490 167 22.1 Plus
Muc68Ca-PA 3135 CG18331-PA 1055..1533 4..490 166 21.2 Plus
Muc68Ca-PA 3135 CG18331-PA 175..653 4..490 164 21.3 Plus
Muc68Ca-PA 3135 CG18331-PA 221..733 3..490 164 21.6 Plus
Muc68Ca-PA 3135 CG18331-PA 780..1293 5..490 162 21.8 Plus
Muc68Ca-PA 3135 CG18331-PA 1100..1613 5..490 162 22 Plus
Muc68Ca-PA 3135 CG18331-PA 1581..2093 3..490 162 21 Plus
Muc68Ca-PA 3135 CG18331-PA 1501..2013 3..490 161 21.7 Plus
Muc68Ca-PA 3135 CG18331-PA 1710..2173 2..490 161 20.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22123-PA 591 GI22123-PA 29..582 29..536 1416 61 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13519-PA 663 GL13519-PA 131..650 18..532 1565 68.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26879-PE 561 GA26879-PE 22..561 18..537 1618 66.7 Plus
Dpse\GA26879-PD 857 GA26879-PD 333..857 18..537 1585 68.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:16:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12908-PA 774 GM12908-PA 361..518 17..174 601 96.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21548-PA 892 GD21548-PA 348..879 1..532 2658 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24244-PA 943 GJ24244-PA 371..930 26..532 1484 61.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14156-PA 879 GK14156-PA 353..870 32..536 1452 66 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:16:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10904-PA 903 GE10904-PA 359..890 1..532 2637 97.2 Plus