Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
GH03227.complete Sequence
1343 bp (1343 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058281
> GH03227.complete
CAAAAGTGAAACACGCACACACTCGGAGAACTTTTGAAACACACATACCA
AAACAAAATTATCGTATTGGTCTTCCAATGGACGAATTTAGAGTACCCAA
AAAGGTTAACCGTAACGTTTTCAAGGCCATTAGCATTCTTCAATCTTCCC
GAACCGATTTTGTCTGCGCTAATGCAATCGTCGACCAGGTAAAGTTCCAA
ATGCGGAACCGCATTCCGGTCGAGCATATAGATGAGGCCATAAAACAGTC
GCTGGCCAACTTGACCATGCTGGGCATAGTGCGGCGTCTGGGATCGTCTA
AGTATTCGCTTAGCACCATAGTGTATGGCCGGTTGGGAATGCCCAATCCC
ATTGCACATCCGCCGGGCAATCCTGGTAGACCACATCGGCGAGCTGCGCA
GAATGCGCGTCAAAAGCGACCTGTCGGGCGCTTGGATCCTTGGAAATCGG
TCAGCAAGATCTTGAGTGAGGACTCTCTGTCTGGAACTGAGATGACCAAG
ATGCGCAAGCGGATGCGCACCAACACAAAGCGCGTTGTCAAGAAGAAACG
AATCCCCAACCGTCGACTATCTCGAGCCAGGAAGTATAAAGAAACAGAAA
TGGCCACCACCAGTATCGACCTAAGATGTTCAGAAAGTCGTTTGGGACTA
GACAATAACGTGCAAATACTATTCGGATCACCGGGATGGACCTATACCAA
ACCCATTCAAAGTACTTTGGTGTTGCCCGATGCACCATTAAGATTGGATC
AAAAAGCGAATGATCCTGAGACCCCGAAAACAACAGTTCTTTCCGGGAAT
AGCAGCAGCACTTCTGTGACAGACGTAAAAGGGAATGTGGTGAAGGATGA
GGAGGGAGGATCTCAACCTTCAATTAGTGGCACAAATTGTCGCGCTGTGC
CCATCGGTTTGGGGATTAGGCCAGCTTACCATACCTCTGGAGGAGAATCC
GATGTGGAGAATGCCTCCGTGGTCGGACTATGTGGCAGTCCCTTATGCCT
GCAATCCACAATGAGTCAATCTCTGGCGCACGATTCAGCTCCAACTACTT
CCCGACCCACAGCAAAACAATCAAATAACTTGGGAATCCAACAAATTACT
GAGTGTCAAGAAAACGATAGAGTAGTGGAGAGTTCAGAAGTTCAGGAAAC
ATTTGAAAATAATTTGGATAAGCAAGCAAGCCAGCCATCCGATGTTTTAG
AAGAGTGCCAGAGCGCACTTAATTATGATTTTTATAAATGATTTTCAATT
TAATAAAACTAATCGAATACCCGCGCCGGCATCGATATATCGATAGTTGG
TTCGCGTGAGCATGCACAAAAAAAAAAAAAAAAAAAAAAAAAA
GH03227.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:59:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5538-RA | 1466 | CG5538-RA | 40..1357 | 1..1318 | 6590 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:10:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 8273510..8274420 | 407..1317 | 4555 | 100 | Plus |
chr3R | 27901430 | chr3R | 8273038..8273444 | 1..407 | 2005 | 99.5 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:29:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:10:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12448132..12449043 | 407..1318 | 4560 | 100 | Plus |
3R | 32079331 | 3R | 12447660..12448066 | 1..407 | 2035 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:18:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 12188963..12189874 | 407..1318 | 4560 | 100 | Plus |
3R | 31820162 | 3R | 12188491..12188897 | 1..407 | 2035 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 03:10:22 has no hits.
GH03227.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:11:03 Download gff for
GH03227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 8273038..8273444 | 1..407 | 99 | -> | Plus |
chr3R | 8273511..8274420 | 408..1317 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:10:10 Download gff for
GH03227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5538-RA | 1..1164 | 78..1241 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:54 Download gff for
GH03227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5538-RA | 1..1164 | 78..1241 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:55:40 Download gff for
GH03227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5538-RA | 1..1164 | 78..1241 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:42:07 Download gff for
GH03227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5538-RA | 1..1164 | 78..1241 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:33:22 Download gff for
GH03227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5538-RA | 1..1164 | 78..1241 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:13:41 Download gff for
GH03227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5538-RA | 8..1324 | 1..1317 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:53 Download gff for
GH03227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5538-RA | 8..1324 | 1..1317 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:55:40 Download gff for
GH03227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5538-RA | 8..1324 | 1..1317 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:42:07 Download gff for
GH03227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5538-RA | 8..1324 | 1..1317 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:33:22 Download gff for
GH03227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5538-RA | 8..1324 | 1..1317 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:11:03 Download gff for
GH03227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12447660..12448066 | 1..407 | 100 | -> | Plus |
3R | 12448133..12449042 | 408..1317 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:11:03 Download gff for
GH03227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12447660..12448066 | 1..407 | 100 | -> | Plus |
3R | 12448133..12449042 | 408..1317 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:11:03 Download gff for
GH03227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12447660..12448066 | 1..407 | 100 | -> | Plus |
3R | 12448133..12449042 | 408..1317 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:55:40 Download gff for
GH03227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8273382..8273788 | 1..407 | 100 | -> | Plus |
arm_3R | 8273855..8274764 | 408..1317 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:25:22 Download gff for
GH03227.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12188491..12188897 | 1..407 | 100 | -> | Plus |
3R | 12188964..12189873 | 408..1317 | 100 | | Plus |
GH03227.hyp Sequence
Translation from 2 to 1240
> GH03227.hyp
KVKHAHTRRTFETHIPKQNYRIGLPMDEFRVPKKVNRNVFKAISILQSSR
TDFVCANAIVDQVKFQMRNRIPVEHIDEAIKQSLANLTMLGIVRRLGSSK
YSLSTIVYGRLGMPNPIAHPPGNPGRPHRRAAQNARQKRPVGRLDPWKSV
SKILSEDSLSGTEMTKMRKRMRTNTKRVVKKKRIPNRRLSRARKYKETEM
ATTSIDLRCSESRLGLDNNVQILFGSPGWTYTKPIQSTLVLPDAPLRLDQ
KANDPETPKTTVLSGNSSSTSVTDVKGNVVKDEEGGSQPSISGTNCRAVP
IGLGIRPAYHTSGGESDVENASVVGLCGSPLCLQSTMSQSLAHDSAPTTS
RPTAKQSNNLGIQQITECQENDRVVESSEVQETFENNLDKQASQPSDVLE
ECQSALNYDFYK*
GH03227.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:34:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5538-PA | 387 | CG5538-PA | 1..387 | 26..412 | 1985 | 100 | Plus |
GH03227.pep Sequence
Translation from 77 to 1240
> GH03227.pep
MDEFRVPKKVNRNVFKAISILQSSRTDFVCANAIVDQVKFQMRNRIPVEH
IDEAIKQSLANLTMLGIVRRLGSSKYSLSTIVYGRLGMPNPIAHPPGNPG
RPHRRAAQNARQKRPVGRLDPWKSVSKILSEDSLSGTEMTKMRKRMRTNT
KRVVKKKRIPNRRLSRARKYKETEMATTSIDLRCSESRLGLDNNVQILFG
SPGWTYTKPIQSTLVLPDAPLRLDQKANDPETPKTTVLSGNSSSTSVTDV
KGNVVKDEEGGSQPSISGTNCRAVPIGLGIRPAYHTSGGESDVENASVVG
LCGSPLCLQSTMSQSLAHDSAPTTSRPTAKQSNNLGIQQITECQENDRVV
ESSEVQETFENNLDKQASQPSDVLEECQSALNYDFYK*
GH03227.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:00:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF19928-PA | 120 | GF19928-PA | 1..106 | 1..99 | 172 | 41.5 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:00:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG18960-PA | 419 | GG18960-PA | 1..419 | 1..387 | 1059 | 57.1 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:00:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH21240-PA | 159 | GH21240-PA | 1..84 | 1..82 | 147 | 36.9 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vrs-PA | 387 | CG5538-PA | 1..387 | 1..387 | 1985 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:00:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI11733-PA | 236 | GI11733-PA | 1..80 | 1..78 | 197 | 51.2 | Plus |
Dmoj\GI10486-PA | 193 | GI10486-PA | 1..78 | 1..78 | 192 | 50 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:00:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM24038-PA | 379 | GM24038-PA | 1..379 | 1..387 | 1546 | 77.4 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:00:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD18838-PA | 378 | GD18838-PA | 1..378 | 1..387 | 1524 | 77 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:00:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ23167-PA | 258 | GJ23167-PA | 1..97 | 1..93 | 214 | 50.5 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE26199-PA | 412 | GE26199-PA | 1..412 | 1..387 | 1124 | 58.8 | Plus |