Clone GH03227 Report

Search the DGRC for GH03227

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:32
Well:27
Vector:pOT2
Associated Gene/TranscriptCG5538-RA
Protein status:GH03227.pep: gold
Preliminary Size:1463
Sequenced Size:1343

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5538 2001-01-01 Release 2 assignment
CG5538 2001-09-19 Blastp of sequenced clone
CG5538 2003-01-01 Sim4 clustering to Release 3
CG5538 2008-04-29 Release 5.5 accounting
CG5538 2008-08-15 Release 5.9 accounting
CG5538 2008-12-18 5.12 accounting

Clone Sequence Records

GH03227.complete Sequence

1343 bp (1343 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058281

> GH03227.complete
CAAAAGTGAAACACGCACACACTCGGAGAACTTTTGAAACACACATACCA
AAACAAAATTATCGTATTGGTCTTCCAATGGACGAATTTAGAGTACCCAA
AAAGGTTAACCGTAACGTTTTCAAGGCCATTAGCATTCTTCAATCTTCCC
GAACCGATTTTGTCTGCGCTAATGCAATCGTCGACCAGGTAAAGTTCCAA
ATGCGGAACCGCATTCCGGTCGAGCATATAGATGAGGCCATAAAACAGTC
GCTGGCCAACTTGACCATGCTGGGCATAGTGCGGCGTCTGGGATCGTCTA
AGTATTCGCTTAGCACCATAGTGTATGGCCGGTTGGGAATGCCCAATCCC
ATTGCACATCCGCCGGGCAATCCTGGTAGACCACATCGGCGAGCTGCGCA
GAATGCGCGTCAAAAGCGACCTGTCGGGCGCTTGGATCCTTGGAAATCGG
TCAGCAAGATCTTGAGTGAGGACTCTCTGTCTGGAACTGAGATGACCAAG
ATGCGCAAGCGGATGCGCACCAACACAAAGCGCGTTGTCAAGAAGAAACG
AATCCCCAACCGTCGACTATCTCGAGCCAGGAAGTATAAAGAAACAGAAA
TGGCCACCACCAGTATCGACCTAAGATGTTCAGAAAGTCGTTTGGGACTA
GACAATAACGTGCAAATACTATTCGGATCACCGGGATGGACCTATACCAA
ACCCATTCAAAGTACTTTGGTGTTGCCCGATGCACCATTAAGATTGGATC
AAAAAGCGAATGATCCTGAGACCCCGAAAACAACAGTTCTTTCCGGGAAT
AGCAGCAGCACTTCTGTGACAGACGTAAAAGGGAATGTGGTGAAGGATGA
GGAGGGAGGATCTCAACCTTCAATTAGTGGCACAAATTGTCGCGCTGTGC
CCATCGGTTTGGGGATTAGGCCAGCTTACCATACCTCTGGAGGAGAATCC
GATGTGGAGAATGCCTCCGTGGTCGGACTATGTGGCAGTCCCTTATGCCT
GCAATCCACAATGAGTCAATCTCTGGCGCACGATTCAGCTCCAACTACTT
CCCGACCCACAGCAAAACAATCAAATAACTTGGGAATCCAACAAATTACT
GAGTGTCAAGAAAACGATAGAGTAGTGGAGAGTTCAGAAGTTCAGGAAAC
ATTTGAAAATAATTTGGATAAGCAAGCAAGCCAGCCATCCGATGTTTTAG
AAGAGTGCCAGAGCGCACTTAATTATGATTTTTATAAATGATTTTCAATT
TAATAAAACTAATCGAATACCCGCGCCGGCATCGATATATCGATAGTTGG
TTCGCGTGAGCATGCACAAAAAAAAAAAAAAAAAAAAAAAAAA

GH03227.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5538-RA 1466 CG5538-RA 40..1357 1..1318 6590 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8273510..8274420 407..1317 4555 100 Plus
chr3R 27901430 chr3R 8273038..8273444 1..407 2005 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:29:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12448132..12449043 407..1318 4560 100 Plus
3R 32079331 3R 12447660..12448066 1..407 2035 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:18:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12188963..12189874 407..1318 4560 100 Plus
3R 31820162 3R 12188491..12188897 1..407 2035 100 Plus
Blast to na_te.dros performed on 2019-03-16 03:10:22 has no hits.

GH03227.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:11:03 Download gff for GH03227.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8273038..8273444 1..407 99 -> Plus
chr3R 8273511..8274420 408..1317 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:10:10 Download gff for GH03227.complete
Subject Subject Range Query Range Percent Splice Strand
CG5538-RA 1..1164 78..1241 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:54 Download gff for GH03227.complete
Subject Subject Range Query Range Percent Splice Strand
CG5538-RA 1..1164 78..1241 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:55:40 Download gff for GH03227.complete
Subject Subject Range Query Range Percent Splice Strand
CG5538-RA 1..1164 78..1241 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:42:07 Download gff for GH03227.complete
Subject Subject Range Query Range Percent Splice Strand
CG5538-RA 1..1164 78..1241 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:33:22 Download gff for GH03227.complete
Subject Subject Range Query Range Percent Splice Strand
CG5538-RA 1..1164 78..1241 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:13:41 Download gff for GH03227.complete
Subject Subject Range Query Range Percent Splice Strand
CG5538-RA 8..1324 1..1317 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:53 Download gff for GH03227.complete
Subject Subject Range Query Range Percent Splice Strand
CG5538-RA 8..1324 1..1317 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:55:40 Download gff for GH03227.complete
Subject Subject Range Query Range Percent Splice Strand
CG5538-RA 8..1324 1..1317 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:42:07 Download gff for GH03227.complete
Subject Subject Range Query Range Percent Splice Strand
CG5538-RA 8..1324 1..1317 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:33:22 Download gff for GH03227.complete
Subject Subject Range Query Range Percent Splice Strand
CG5538-RA 8..1324 1..1317 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:11:03 Download gff for GH03227.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12447660..12448066 1..407 100 -> Plus
3R 12448133..12449042 408..1317 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:11:03 Download gff for GH03227.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12447660..12448066 1..407 100 -> Plus
3R 12448133..12449042 408..1317 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:11:03 Download gff for GH03227.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12447660..12448066 1..407 100 -> Plus
3R 12448133..12449042 408..1317 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:55:40 Download gff for GH03227.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8273382..8273788 1..407 100 -> Plus
arm_3R 8273855..8274764 408..1317 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:25:22 Download gff for GH03227.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12188491..12188897 1..407 100 -> Plus
3R 12188964..12189873 408..1317 100   Plus

GH03227.hyp Sequence

Translation from 2 to 1240

> GH03227.hyp
KVKHAHTRRTFETHIPKQNYRIGLPMDEFRVPKKVNRNVFKAISILQSSR
TDFVCANAIVDQVKFQMRNRIPVEHIDEAIKQSLANLTMLGIVRRLGSSK
YSLSTIVYGRLGMPNPIAHPPGNPGRPHRRAAQNARQKRPVGRLDPWKSV
SKILSEDSLSGTEMTKMRKRMRTNTKRVVKKKRIPNRRLSRARKYKETEM
ATTSIDLRCSESRLGLDNNVQILFGSPGWTYTKPIQSTLVLPDAPLRLDQ
KANDPETPKTTVLSGNSSSTSVTDVKGNVVKDEEGGSQPSISGTNCRAVP
IGLGIRPAYHTSGGESDVENASVVGLCGSPLCLQSTMSQSLAHDSAPTTS
RPTAKQSNNLGIQQITECQENDRVVESSEVQETFENNLDKQASQPSDVLE
ECQSALNYDFYK*

GH03227.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5538-PA 387 CG5538-PA 1..387 26..412 1985 100 Plus

GH03227.pep Sequence

Translation from 77 to 1240

> GH03227.pep
MDEFRVPKKVNRNVFKAISILQSSRTDFVCANAIVDQVKFQMRNRIPVEH
IDEAIKQSLANLTMLGIVRRLGSSKYSLSTIVYGRLGMPNPIAHPPGNPG
RPHRRAAQNARQKRPVGRLDPWKSVSKILSEDSLSGTEMTKMRKRMRTNT
KRVVKKKRIPNRRLSRARKYKETEMATTSIDLRCSESRLGLDNNVQILFG
SPGWTYTKPIQSTLVLPDAPLRLDQKANDPETPKTTVLSGNSSSTSVTDV
KGNVVKDEEGGSQPSISGTNCRAVPIGLGIRPAYHTSGGESDVENASVVG
LCGSPLCLQSTMSQSLAHDSAPTTSRPTAKQSNNLGIQQITECQENDRVV
ESSEVQETFENNLDKQASQPSDVLEECQSALNYDFYK*

GH03227.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19928-PA 120 GF19928-PA 1..106 1..99 172 41.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18960-PA 419 GG18960-PA 1..419 1..387 1059 57.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21240-PA 159 GH21240-PA 1..84 1..82 147 36.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
vrs-PA 387 CG5538-PA 1..387 1..387 1985 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11733-PA 236 GI11733-PA 1..80 1..78 197 51.2 Plus
Dmoj\GI10486-PA 193 GI10486-PA 1..78 1..78 192 50 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:00:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24038-PA 379 GM24038-PA 1..379 1..387 1546 77.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18838-PA 378 GD18838-PA 1..378 1..387 1524 77 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23167-PA 258 GJ23167-PA 1..97 1..93 214 50.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26199-PA 412 GE26199-PA 1..412 1..387 1124 58.8 Plus