Clone GH03305 Report

Search the DGRC for GH03305

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:33
Well:5
Vector:pOT2
Associated Gene/TranscriptCG6287-RA
Protein status:GH03305.pep: gold
Preliminary Size:4600
Sequenced Size:1251

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6287 2001-01-01 Release 2 assignment
CG6287 2001-09-19 Blastp of sequenced clone
CG6287 2003-01-01 Sim4 clustering to Release 3
CG6287 2008-04-29 Release 5.5 accounting
CG6287 2008-08-15 Release 5.9 accounting
CG6287 2008-12-18 5.12 accounting

Clone Sequence Records

GH03305.complete Sequence

1251 bp (1251 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058282

> GH03305.complete
TAATTGGCAAAAATTAACGCAATCTACCGGTTGTCCAGATTTTTCAGTGT
ATTCATTACCCACCCAAATATGCCCCTCAATATAAGAAAAGTGCTGGTCT
GCGATGCTGTGGACAAATCCTGCGTGGAGCTGCTGGAACAGCATGGGATT
AAGGTTACCTACAAACTAAAGCTCCCCGTGGAGGAACTGTGTCAGGAAGT
TAAGAATTTCGACGCAGCCATCGTTCGTTCGGATACCAAAATAACCGCGG
AAGTTTTGGCCGCCGGATCCGGCAGCCTGAAGGTCGTTGGCCGTGCGGGG
GCGGGTGTTGACAACATCGATGTTCCCGCAGCCACAGCGCAAAATGTCGT
TGTCCTGAACACTCCGGGTGGCAATTCCATTTCGGCCTGTGAGCTGACGT
GCATCCTAATTGGCTCCCTGGCCCGTCCCGTCGTCCCCGCCGGTCAGAGC
ATGAAGGAGGGTCGCTGGGACAGGAAGCTCTATGCCGGCACAGAGCTGTA
TGGAAAAACCCTGGCCGTTCTCGGATTGGGACGCATTGGACGCGAGGTCG
CCATTCGGATGAAGACCTGGGGCATGCGGATTATTGGTTACGATCCCATC
ACCACGGAGGCTGAGGCCAAGGCGGCGGGCATCGAGAAGATGACGCTGGA
GGAGATTTGGCCACTGGCGGACTACATAACCGTGCACACGCCGCTGATCC
CAGCCACCAGAAATCTCATATCGGCGGAGACACTGGCCAAGTGCAAACAG
GGCGTTAAGGTGGTGAATGTGGCCCGGGGCGGCATCATCGACGAGCAGGC
CGTGCTCGATGGCCTTGAGAGCGGAAAAGTGGCCGGCGCGGCCTTCGACG
TTTATCCCGAGGAGCCGCCAAAGTCTGCGGTCACCAAGGCCCTCATCAGT
CATCCCAAGGTGGTGGCCACGCCGCATCTGGGCGCGAGCACTTCGGAGGC
GCAGGTCCGTGTTGCCGTGGAGGTGGCGGAGCAGTTCATCGCCCTCAATG
GAACCTCGCCGAAGTACACCAGTTATGCGGGCGTTATTAACAAGGAGGCA
CTCGCCCATTACCAGTGAAGCAAATCGAATATTCACAACCATCAGCACAT
TCTAAATTCGATATTCAGCATTTATAAATAAATAAGTTTACAACCAGGGA
TGTAAACAACGTAAAAACCAAAATACACAAGTAAAAATAAAAAGAAGAAG
AGTTTTCTTAAAATACTCTCAGATCTAAATATTAAAAAAAAAAAAAAAAA
A

GH03305.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6287-RA 1480 CG6287-RA 248..1480 1..1233 6165 100 Plus
CG6287.a 1264 CG6287.a 70..1264 39..1233 5975 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11150227..11150747 1233..713 2560 99.4 Minus
chr2L 23010047 chr2L 11151056..11151275 579..360 1100 100 Minus
chr2L 23010047 chr2L 11154234..11154388 155..1 775 100 Minus
chr2L 23010047 chr2L 11152128..11152284 359..203 770 99.4 Minus
chr2L 23010047 chr2L 11150860..11150997 712..575 675 99.3 Minus
chr2L 23010047 chr2L 11153801..11153854 204..151 270 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:29:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11151506..11152026 1233..713 2605 100 Minus
2L 23513712 2L 11152335..11152554 579..360 1100 100 Minus
2L 23513712 2L 11153410..11153566 359..203 785 100 Minus
2L 23513712 2L 11155516..11155670 155..1 775 100 Minus
2L 23513712 2L 11152139..11152276 712..575 675 99.3 Minus
2L 23513712 2L 11155083..11155136 204..151 270 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11151506..11152026 1233..713 2605 100 Minus
2L 23513712 2L 11152335..11152554 579..360 1100 100 Minus
2L 23513712 2L 11153410..11153566 359..203 785 100 Minus
2L 23513712 2L 11155516..11155670 155..1 775 100 Minus
2L 23513712 2L 11152139..11152276 712..575 675 99.2 Minus
2L 23513712 2L 11155083..11155136 204..151 270 100 Minus
Blast to na_te.dros performed on 2019-03-16 07:16:26 has no hits.

GH03305.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:17:05 Download gff for GH03305.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11151056..11151275 360..579 100 <- Minus
chr2L 11152128..11152282 205..359 99 <- Minus
chr2L 11153801..11153851 154..204 100 <- Minus
chr2L 11154236..11154388 1..153 100   Minus
chr2L 11150227..11150747 713..1233 99 <- Minus
chr2L 11150860..11150992 580..712 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:10:21 Download gff for GH03305.complete
Subject Subject Range Query Range Percent Splice Strand
CG6287-RA 1..999 70..1068 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:10:02 Download gff for GH03305.complete
Subject Subject Range Query Range Percent Splice Strand
CG6287-RA 1..999 70..1068 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:30:28 Download gff for GH03305.complete
Subject Subject Range Query Range Percent Splice Strand
CG6287-RA 1..999 70..1068 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:40:55 Download gff for GH03305.complete
Subject Subject Range Query Range Percent Splice Strand
CG6287-RA 1..999 70..1068 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:30:19 Download gff for GH03305.complete
Subject Subject Range Query Range Percent Splice Strand
CG6287-RA 1..999 70..1068 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:01:04 Download gff for GH03305.complete
Subject Subject Range Query Range Percent Splice Strand
CG6287-RA 47..1279 1..1233 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:10:02 Download gff for GH03305.complete
Subject Subject Range Query Range Percent Splice Strand
CG6287-RA 47..1279 1..1233 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:28 Download gff for GH03305.complete
Subject Subject Range Query Range Percent Splice Strand
CG6287-RA 52..1284 1..1233 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:40:55 Download gff for GH03305.complete
Subject Subject Range Query Range Percent Splice Strand
CG6287-RA 47..1279 1..1233 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:30:19 Download gff for GH03305.complete
Subject Subject Range Query Range Percent Splice Strand
CG6287-RA 52..1284 1..1233 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:17:05 Download gff for GH03305.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11151506..11152026 713..1233 100 <- Minus
2L 11152139..11152271 580..712 100 <- Minus
2L 11152335..11152554 360..579 100 <- Minus
2L 11153410..11153564 205..359 100 <- Minus
2L 11155083..11155133 154..204 100 <- Minus
2L 11155518..11155670 1..153 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:17:05 Download gff for GH03305.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11151506..11152026 713..1233 100 <- Minus
2L 11152139..11152271 580..712 100 <- Minus
2L 11152335..11152554 360..579 100 <- Minus
2L 11153410..11153564 205..359 100 <- Minus
2L 11155083..11155133 154..204 100 <- Minus
2L 11155518..11155670 1..153 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:17:05 Download gff for GH03305.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11151506..11152026 713..1233 100 <- Minus
2L 11152139..11152271 580..712 100 <- Minus
2L 11152335..11152554 360..579 100 <- Minus
2L 11153410..11153564 205..359 100 <- Minus
2L 11155083..11155133 154..204 100 <- Minus
2L 11155518..11155670 1..153 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:28 Download gff for GH03305.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11155083..11155133 154..204 100 <- Minus
arm_2L 11155518..11155670 1..153 100   Minus
arm_2L 11151506..11152026 713..1233 100 <- Minus
arm_2L 11152139..11152271 580..712 100 <- Minus
arm_2L 11152335..11152554 360..579 100 <- Minus
arm_2L 11153410..11153564 205..359 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:18:29 Download gff for GH03305.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11155083..11155133 154..204 100 <- Minus
2L 11155518..11155670 1..153 100   Minus
2L 11151506..11152026 713..1233 100 <- Minus
2L 11152139..11152271 580..712 100 <- Minus
2L 11152335..11152554 360..579 100 <- Minus
2L 11153410..11153564 205..359 100 <- Minus

GH03305.hyp Sequence

Translation from 69 to 1067

> GH03305.hyp
MPLNIRKVLVCDAVDKSCVELLEQHGIKVTYKLKLPVEELCQEVKNFDAA
IVRSDTKITAEVLAAGSGSLKVVGRAGAGVDNIDVPAATAQNVVVLNTPG
GNSISACELTCILIGSLARPVVPAGQSMKEGRWDRKLYAGTELYGKTLAV
LGLGRIGREVAIRMKTWGMRIIGYDPITTEAEAKAAGIEKMTLEEIWPLA
DYITVHTPLIPATRNLISAETLAKCKQGVKVVNVARGGIIDEQAVLDGLE
SGKVAGAAFDVYPEEPPKSAVTKALISHPKVVATPHLGASTSEAQVRVAV
EVAEQFIALNGTSPKYTSYAGVINKEALAHYQ*

GH03305.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6287-PA 332 CG6287-PA 1..332 1..332 1675 100 Plus
CtBP-PI 379 CG7583-PI 91..337 69..307 318 31.4 Plus
CtBP-PF 383 CG7583-PF 91..337 69..307 318 31.4 Plus
CtBP-PG 473 CG7583-PG 91..337 69..307 318 31.4 Plus
CtBP-PJ 476 CG7583-PJ 91..337 69..307 318 31.4 Plus

GH03305.pep Sequence

Translation from 69 to 1067

> GH03305.pep
MPLNIRKVLVCDAVDKSCVELLEQHGIKVTYKLKLPVEELCQEVKNFDAA
IVRSDTKITAEVLAAGSGSLKVVGRAGAGVDNIDVPAATAQNVVVLNTPG
GNSISACELTCILIGSLARPVVPAGQSMKEGRWDRKLYAGTELYGKTLAV
LGLGRIGREVAIRMKTWGMRIIGYDPITTEAEAKAAGIEKMTLEEIWPLA
DYITVHTPLIPATRNLISAETLAKCKQGVKVVNVARGGIIDEQAVLDGLE
SGKVAGAAFDVYPEEPPKSAVTKALISHPKVVATPHLGASTSEAQVRVAV
EVAEQFIALNGTSPKYTSYAGVINKEALAHYQ*

GH03305.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15130-PA 332 GF15130-PA 1..332 1..332 1655 94.3 Plus
Dana\GF16928-PA 502 GF16928-PA 91..335 69..302 311 32 Plus
Dana\GF20930-PA 327 GF20930-PA 43..306 39..299 263 26.3 Plus
Dana\GF20919-PA 324 GF20919-PA 7..311 7..307 262 24.8 Plus
Dana\GF16345-PA 325 GF16345-PA 14..312 14..308 252 28.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10320-PA 332 GG10320-PA 1..332 1..332 1726 99.4 Plus
Dere\GG19357-PA 474 GG19357-PA 91..335 69..302 310 32 Plus
Dere\GG21257-PA 326 GG21257-PA 9..313 7..307 249 24.1 Plus
Dere\GG21258-PA 327 GG21258-PA 43..306 39..299 243 25.2 Plus
Dere\GG13007-PA 325 GG13007-PA 14..299 14..295 237 29.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13534-PA 332 GH13534-PA 1..332 1..332 1585 89.8 Plus
Dgri\CtBP-PA 492 GH18368-PA 91..335 69..302 309 32 Plus
Dgri\GH18259-PA 324 GH18259-PA 14..312 14..308 249 28.2 Plus
Dgri\GH10588-PA 325 GH10588-PA 8..325 7..319 233 24.7 Plus
Dgri\GH10587-PA 356 GH10587-PA 38..343 7..307 222 23.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6287-PA 332 CG6287-PA 1..332 1..332 1675 100 Plus
CtBP-PI 379 CG7583-PI 91..337 69..307 318 31.4 Plus
CtBP-PF 383 CG7583-PF 91..337 69..307 318 31.4 Plus
CtBP-PG 473 CG7583-PG 91..337 69..307 318 31.4 Plus
CtBP-PJ 476 CG7583-PJ 91..337 69..307 318 31.4 Plus
CtBP-PH 481 CG7583-PH 91..337 69..307 318 31.4 Plus
CtBP-PA 386 CG7583-PA 91..340 69..307 315 31.4 Plus
CtBP-PB 386 CG7583-PB 91..340 69..307 315 31.4 Plus
CtBP-PD 386 CG7583-PD 91..340 69..307 315 31.4 Plus
CtBP-PC 386 CG7583-PC 91..340 69..307 315 31.4 Plus
CtBP-PE 476 CG7583-PE 91..340 69..307 315 31.4 Plus
CG1236-PA 347 CG1236-PA 36..334 14..308 279 28.9 Plus
CG31674-PB 327 CG31674-PB 43..306 39..299 261 25.8 Plus
CG31674-PA 327 CG31674-PA 43..306 39..299 261 25.8 Plus
CG31673-PA 326 CG31673-PA 9..313 7..307 251 23.8 Plus
CG31673-PB 325 CG31673-PB 9..312 7..307 239 23.5 Plus
CG9331-PK 326 CG9331-PK 8..313 7..307 237 23.1 Plus
CG9331-PJ 326 CG9331-PJ 8..313 7..307 237 23.1 Plus
CG9331-PG 326 CG9331-PG 8..313 7..307 237 23.1 Plus
CG9331-PF 326 CG9331-PF 8..313 7..307 237 23.1 Plus
CG9331-PB 326 CG9331-PB 8..313 7..307 237 23.1 Plus
CG9331-PD 326 CG9331-PD 8..313 7..307 237 23.1 Plus
CG9331-PL 364 CG9331-PL 46..351 7..307 237 23.1 Plus
CG9331-PI 364 CG9331-PI 46..351 7..307 237 23.1 Plus
CG9331-PH 364 CG9331-PH 46..351 7..307 237 23.1 Plus
CG9331-PM 364 CG9331-PM 46..351 7..307 237 23.1 Plus
CG9331-PA 364 CG9331-PA 46..351 7..307 237 23.1 Plus
CG9331-PC 364 CG9331-PC 46..351 7..307 237 23.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18148-PA 332 GI18148-PA 1..332 1..332 1598 90.7 Plus
Dmoj\CtBP-PA 512 GI23357-PA 91..335 69..302 309 32 Plus
Dmoj\GI23658-PA 324 GI23658-PA 14..316 14..311 264 30.2 Plus
Dmoj\GI23165-PA 401 GI23165-PA 41..307 7..266 209 24.9 Plus
Dmoj\GI23143-PA 357 GI23143-PA 40..345 7..308 181 18.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18582-PA 332 GL18582-PA 1..332 1..332 1627 92.2 Plus
Dper\CtBP-PA 482 GL24381-PA 91..335 69..302 310 32 Plus
Dper\GL18524-PA 330 GL18524-PA 13..317 7..307 250 25.4 Plus
Dper\GL18523-PA 362 GL18523-PA 44..349 7..307 236 25.6 Plus
Dper\GL24519-PA 304 GL24519-PA 14..291 14..308 191 27.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19489-PA 332 GA19489-PA 1..332 1..332 1627 92.2 Plus
Dpse\GA20456-PD 383 GA20456-PD 91..332 69..302 316 32 Plus
Dpse\GA20456-PE 381 GA20456-PE 91..335 69..302 314 32 Plus
Dpse\GA20456-PC 382 GA20456-PC 91..335 69..302 314 32 Plus
Dpse\GA20456-PB 479 GA20456-PB 91..332 69..302 312 32 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11122-PA 332 GM11122-PA 1..332 1..332 1727 99.4 Plus
Dsec\CtBP-PA 476 GM24076-PA 91..335 69..302 309 32 Plus
Dsec\GM23376-PA 327 GM23376-PA 43..306 39..299 255 25.8 Plus
Dsec\GM10835-PA 325 GM10835-PA 14..312 14..308 244 28.6 Plus
Dsec\GM23374-PA 364 GM23374-PA 46..351 7..307 234 23.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22186-PA 332 GD22186-PA 1..332 1..332 1725 99.4 Plus
Dsim\GD18873-PA 386 GD18873-PA 91..335 69..302 315 32 Plus
Dsim\GD24286-PA 327 GD24286-PA 43..306 39..299 258 25.8 Plus
Dsim\GD24284-PA 326 GD24284-PA 22..313 19..307 246 23.5 Plus
Dsim\GD19816-PA 307 GD19816-PA 19..294 35..308 234 28.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14930-PA 332 GJ14930-PA 1..332 1..332 1616 91.6 Plus
Dvir\CtBP-PA 502 GJ10351-PA 91..335 69..302 308 32 Plus
Dvir\GJ23501-PA 324 GJ23501-PA 14..312 14..308 261 28.2 Plus
Dvir\GJ23664-PA 325 GJ23664-PA 8..312 7..307 215 24.6 Plus
Dvir\GJ23653-PA 359 GJ23653-PA 41..346 7..307 215 24.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15239-PA 332 GK15239-PA 1..332 1..332 1624 91.9 Plus
Dwil\GK12223-PA 482 GK12223-PA 91..335 69..302 312 32 Plus
Dwil\GK13923-PA 324 GK13923-PA 13..311 14..308 297 30.2 Plus
Dwil\GK15437-PA 329 GK15437-PA 17..329 14..316 285 26.3 Plus
Dwil\GK15436-PA 326 GK15436-PA 9..313 7..307 251 25.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12961-PA 332 GE12961-PA 1..332 1..332 1706 98.5 Plus
Dyak\GE26234-PA 477 GE26234-PA 91..335 69..302 309 32 Plus
Dyak\GE12351-PA 326 GE12351-PA 9..313 7..307 261 25.1 Plus
Dyak\GE12352-PA 327 GE12352-PA 43..306 39..299 259 25.8 Plus
Dyak\GE10159-PA 325 GE10159-PA 14..312 14..308 244 28.6 Plus