Clone GH03377 Report

Search the DGRC for GH03377

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:33
Well:77
Vector:pOT2
Associated Gene/TranscriptCG17712-RA
Protein status:GH03377.pep: gold
Preliminary Size:1422
Sequenced Size:1446

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17712 2000-02-14 Blastp of sequenced clone
CG17712 2001-01-01 Release 2 assignment
CG17712 2003-01-01 Sim4 clustering to Release 3
CG17712 2008-04-29 Release 5.5 accounting
CG17712 2008-08-15 Release 5.9 accounting
CG17712 2008-12-18 5.12 accounting

Clone Sequence Records

GH03377.complete Sequence

1446 bp (1446 high quality bases) assembled on 2000-02-14

GenBank Submission: AF145615

> GH03377.complete
GGCACGAGGGCAGCCCTGGTCGGCCACCAAAAAATAAACATTGGAATTTT
CCCTTAACTTTATAGAGTTTTATCCAATTTGAGCGATGCTGCCGGGCGTT
GGAGTGTTCGGAACGGGAGAGATAGCCAATGTGCTGGTGCCGCTGCTGCG
GGAGAAAGGATTCGAGGTGCGGGCCATTTGGGGCAGGACCCTGAAAGAGG
CGAAAGAGACTGCGACCACGCAGAATGTACAATTCCATACGAACGTAATC
GACGATGTCCTGCTGCGGAAGGATGTGGATCTGGTGTTCATCGTGTGCCA
GCCCTTTCTGCACGCGGAGATCTCGGTGAAGGCCTTGGGCATCGGGAAGC
ATGTGGTGTGCGACAAGCCAGCAGGATTGCACCAGCAGGACGCACTCAAA
ATGGTTCGGGCTTCTCAGTACTATCCCACTCTGATTTCCCTGGTCAATCA
CCCGCTGAGGTTCCTGCCCGCCTTTACACATATGCGTCGTTGTCTGCAGG
AGGAGCTAATTGGCTCTATTGGCGACGTGGTACTCATGGATGTGCGCGTC
CAGATGGGAACGCTCTTTCCCGAGAAGTACAACTGGATGTGCGATGCGCA
AATGGGCGGCGGTGCCCTGAATCTCGTGGGATCCGTGGTGGACTTGGTCA
CCTTTCTGCTGCAACAGCAGGCAATAAGAGTGCATGGAGTCCTACGATCC
TACACGAAAACCACACCGGCCATCAATGGCATTCGACAAATTACGGCTCC
GGATTTCTGCAACTTCCAAATGGAACTGGCCAGTGGAACGCTGGTCACAG
TGGCCCTGCACAGTCACACTGTGCCAGCAAAAGCCTTCTCGCAGGAAGTG
CTCATCTATGGCAGCAAAGGACACCTGGTGGTCCGCGGCGGCGACCTATT
TGTCCTCAAGGAGGGCCAACCCAAAGAGGAAGCTGTTTACGTGGATGTCC
AGGATTTGCACTTCGCCACCAACAACTCTTTGCTACCACGACCATATATC
AAAGGACTCTGCAAGATGGTGGGCGCTCTGAAGGAAGCCTTCGGCAGCAA
GGAGTCCTCCTGGGTTAAGGCTCCAGTTTCCACAGCGGCCACCTTTGAGG
ACGGCCTCTACGTTCAGGCTGTGGTTGAGGCCATCCGGAAATCGAACGAG
ACCAGGCAGTGGCAAAGGGTTCAGCTGTCCACCGACAGCCCCCTGAATCA
CGACCAGATAATTCGATATGCACGCATGTCCACAATGTGAGGGAGTCTGT
ATTACATAGGTGCAATATATGAATGATTCCACTATATATTTTTTATATAA
TGTACGTGTTTAGTCTTTAAGCGTTCAAAAGATTCAGGCTTTCCAGCCGG
CGTCATCTTCATCAATGTATTTAACTTATTTGTACGGCATCAGCATTTTG
CAACTAATAAAATTGATTTGTTAGAAAAAAAAAAAAAAAAAAAAAA

GH03377.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17712-RA 1430 CG17712-RA 15..1430 9..1424 7080 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1750500..1751915 1424..9 7050 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:29:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1750686..1752102 1425..9 7085 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1750686..1752102 1425..9 7085 100 Minus
Blast to na_te.dros performed on 2019-03-16 23:34:20 has no hits.

GH03377.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:35:19 Download gff for GH03377.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1750500..1751921 5..1424 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:10:31 Download gff for GH03377.complete
Subject Subject Range Query Range Percent Splice Strand
CG17712-RA 1..1155 86..1240 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:33:23 Download gff for GH03377.complete
Subject Subject Range Query Range Percent Splice Strand
CG17712-RA 1..1155 86..1240 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:44:42 Download gff for GH03377.complete
Subject Subject Range Query Range Percent Splice Strand
CG17712-RA 1..1155 86..1240 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:07:53 Download gff for GH03377.complete
Subject Subject Range Query Range Percent Splice Strand
CG17712-RA 1..1155 86..1240 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:52:00 Download gff for GH03377.complete
Subject Subject Range Query Range Percent Splice Strand
CG17712-RA 1..1155 86..1240 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:35:33 Download gff for GH03377.complete
Subject Subject Range Query Range Percent Splice Strand
CG17712-RA 9..1430 5..1424 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:33:23 Download gff for GH03377.complete
Subject Subject Range Query Range Percent Splice Strand
CG17712-RA 9..1430 5..1424 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:42 Download gff for GH03377.complete
Subject Subject Range Query Range Percent Splice Strand
CG17712-RA 15..1436 5..1424 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:07:53 Download gff for GH03377.complete
Subject Subject Range Query Range Percent Splice Strand
CG17712-RA 9..1430 5..1424 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:52:00 Download gff for GH03377.complete
Subject Subject Range Query Range Percent Splice Strand
CG17712-RA 15..1436 5..1424 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:35:19 Download gff for GH03377.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1750687..1752108 5..1424 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:35:19 Download gff for GH03377.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1750687..1752108 5..1424 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:35:19 Download gff for GH03377.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1750687..1752108 5..1424 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:42 Download gff for GH03377.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1750687..1752108 5..1424 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:45:28 Download gff for GH03377.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1750687..1752108 5..1424 99   Minus

GH03377.pep Sequence

Translation from 85 to 1239

> GH03377.pep
MLPGVGVFGTGEIANVLVPLLREKGFEVRAIWGRTLKEAKETATTQNVQF
HTNVIDDVLLRKDVDLVFIVCQPFLHAEISVKALGIGKHVVCDKPAGLHQ
QDALKMVRASQYYPTLISLVNHPLRFLPAFTHMRRCLQEELIGSIGDVVL
MDVRVQMGTLFPEKYNWMCDAQMGGGALNLVGSVVDLVTFLLQQQAIRVH
GVLRSYTKTTPAINGIRQITAPDFCNFQMELASGTLVTVALHSHTVPAKA
FSQEVLIYGSKGHLVVRGGDLFVLKEGQPKEEAVYVDVQDLHFATNNSLL
PRPYIKGLCKMVGALKEAFGSKESSWVKAPVSTAATFEDGLYVQAVVEAI
RKSNETRQWQRVQLSTDSPLNHDQIIRYARMSTM*

GH03377.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15874-PA 384 GF15874-PA 1..384 1..384 2030 97.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24577-PA 384 GG24577-PA 1..384 1..384 2045 99.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH25023-PA 386 GH25023-PA 1..386 1..384 1882 90.4 Plus
Dgri\GH25259-PA 369 GH25259-PA 1..369 1..384 1762 86.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17712-PA 384 CG17712-PA 1..384 1..384 1977 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13770-PA 386 GI13770-PA 1..386 1..384 1911 91.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18471-PA 384 GL18471-PA 1..384 1..384 2014 97.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14620-PA 384 GA14620-PA 1..384 1..384 2014 97.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16595-PA 384 GM16595-PA 1..384 1..384 2052 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22896-PA 384 GD22896-PA 1..384 1..384 2058 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17446-PA 386 GJ17446-PA 1..386 1..384 1892 90.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18466-PA 382 GK18466-PA 1..382 1..384 1957 94 Plus
Dwil\GK18465-PA 181 GK18465-PA 1..173 1..175 869 92.6 Plus
Dwil\GK21156-PA 133 GK21156-PA 1..133 252..384 683 93.2 Plus
Dwil\GK14982-PA 334 GK14982-PA 8..206 6..205 149 25.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15445-PA 384 GE15445-PA 1..384 1..384 2051 99.7 Plus

GH03377.hyp Sequence

Translation from 85 to 1239

> GH03377.hyp
MLPGVGVFGTGEIANVLVPLLREKGFEVRAIWGRTLKEAKETATTQNVQF
HTNVIDDVLLRKDVDLVFIVCQPFLHAEISVKALGIGKHVVCDKPAGLHQ
QDALKMVRASQYYPTLISLVNHPLRFLPAFTHMRRCLQEELIGSIGDVVL
MDVRVQMGTLFPEKYNWMCDAQMGGGALNLVGSVVDLVTFLLQQQAIRVH
GVLRSYTKTTPAINGIRQITAPDFCNFQMELASGTLVTVALHSHTVPAKA
FSQEVLIYGSKGHLVVRGGDLFVLKEGQPKEEAVYVDVQDLHFATNNSLL
PRPYIKGLCKMVGALKEAFGSKESSWVKAPVSTAATFEDGLYVQAVVEAI
RKSNETRQWQRVQLSTDSPLNHDQIIRYARMSTM*

GH03377.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG17712-PA 384 CG17712-PA 1..384 1..384 1977 100 Plus