Clone GH03493 Report

Search the DGRC for GH03493

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:34
Well:93
Vector:pOT2
Associated Gene/TranscriptCG31798-RA
Protein status:GH03493.pep: gold
Sequenced Size:1977

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31798 2003-01-01 Sim4 clustering to Release 3
CG31798 2005-01-26 Blastp of sequenced clone
CG31798 2008-04-29 Release 5.5 accounting
CG31798 2008-08-15 Release 5.9 accounting
CG31798 2008-12-18 5.12 accounting

Clone Sequence Records

GH03493.complete Sequence

1977 bp (1977 high quality bases) assembled on 2005-01-26

GenBank Submission: BT021441

> GH03493.complete
AAAGCATAACTGCCACAAAACTAAATTGAAAATTTATACATTTAATGCAT
CACTTTTAACCTGATCCAAGGTCATGTCCTTGCAGTGGCAAAATGAGGTG
GTGCGGATTACGCGCCAAGTGAAGCGCAATCTACCGCACCGAAATTTCCG
AGAGATTAACTTTGATCGCGAGACCATAAGGCAAGGAATCACCCCCCTGA
CCTACGATGAGGCGCGCCGTCTTAAGGGACCAGTTTTCGAGGCTCTGGAG
GATGAGTTGCGTCGAGCAGGATGCACCATGCTGCCGGAGTTTCTCCACTG
CCTGGCCACCAAGGAGAATGCTCTTTTCGAGAGCCTAAATATCCGGGAAC
GTCTATCCGATGACTCGGAATTGCTCTACGGAATGGTGGATCGACTCCGG
GATGCCGAACTGGCTGTTTGCCTGAACAAGCACCGGGGTCTCAAAAAGTG
TTTTGGCCTATTCTTCGAGACCATGCAGCTGCTGGAGCCGTATCGTCAGA
AATACGCATACGCCCTGGTGGCCCTCAATGAGCACATCATCTCGTTGTGC
CGCAACATTGCCGGCCAGGAACATGATGCCGCCGAGTACATATCCCGCAT
CTACTACATCTATTCCATGTACCTGGTGAACACAGGCCAGCGAACCTCGG
CCATCAATTTCCTACAAATTGCCATGGATCTGGTGCGTGGTCACGTGTGG
ACCGCCGAGGTGGGAATGCCCGCAGGCAGTCTTACGCTCCACGAGCTGGT
GGCCCAGAATCTCGCCAGGCAGCTCCTCATCCAGGGCAAGTCCATTGTAC
GCCAGCATCCCGAGGATGCGGTGGCCATGGCCCGACGAGCCACTGTACTA
ATAGCCGAAATTGGCAGGGATAAGAACATGGAGATTTTCTGTGACACTTT
TCTGGAGCGTGCCTACTTTCTAATGGAGATTGGTAACTTTAACTCGGCGC
AGCAGTGCCTTGAGCAGATCAAAACCCAGATCCTGGCCTGCACCGAATAT
CGATTCGTTAAGCTCAACATTAAGTACTACCTGATCCAAGGGCAATGTTC
CGAGATTTTTGAGCACGTGGAGAAGGCCACTTCGTGTTACAAGAGAGCTC
TTCGCTTATCCCGACTCTATACCCACCGCGATTTGGAGGCAGAGATACTT
TTGCATCTGGGAAAGATCTTTGCCAAGGACACACAGATGACAAGTATCGC
TAAGAAATGCTATGAGCATGCCAAGCGCATCTACGTCGACTTTAACGATC
TGCACAGCCGCAAGATGGCCAACTATCTGCAGGCCAAGTTAATGGCGGAT
GAAATCACACCACTTTATATGGCCATGCTTAAGTCGTCTACCACTCGCTA
TTGCGCCTTTTTCAACCTGCGTCAGTGGAAGAACCGCTGTCGTCCTTTTT
GGAAGCGACTGGGTGACGAGATCATCAAACAGGAAACGGATAGCATATAC
TGTCTGCTGGATGAGGAGAAGGAGGATCCTGGTCACGATGTGGCTCCCTA
TGACGATATCGATCTCAAGACATTCAAACTGGCTGAGGGAGATATCTAAG
TTAGCTCTGTTCTTGGGAAAAGTTTATTGATTACTGCTCCTGATATTTCT
TTTAGGCAATAATACAAAATTTTCAGAACGGGCTTTTAGGTTGGTTCAAA
TAACAAGTTGATTTTCTTTCACTTATTGAGCTGGCTGTTGTAAACACATT
CTATTTACCCAATGACTAAAATTATTTACACGCATCAGAGTTGTGGAATC
CCCTCGTTGAAGTACTGCCATAAACGGCCGAGTGTATAAATATATGGATG
ATTATCAAATCGTGAGTGTAATGCAAGAATTTATTGACTTCCGATGTCTG
AGTTATTTGATCACGCATTCGGCTGCAATGCCTTAATGTCTGAATGAAAA
TAGAACTACCTGAGCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA

GH03493.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG31798-RA 1969 CG31798-RA 53..1969 1..1917 9585 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19393832..19394699 1050..1917 4310 99.8 Plus
chr2L 23010047 chr2L 19392665..19393524 1..860 4255 99.7 Plus
chr2L 23010047 chr2L 19393585..19393780 861..1056 980 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:29:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19395323..19396192 1050..1919 4320 99.8 Plus
2L 23513712 2L 19394156..19395015 1..860 4300 100 Plus
2L 23513712 2L 19395076..19395271 861..1056 980 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19395323..19396192 1050..1919 4320 99.7 Plus
2L 23513712 2L 19394156..19395015 1..860 4300 100 Plus
2L 23513712 2L 19395076..19395271 861..1056 980 100 Plus
Blast to na_te.dros performed on 2019-03-16 01:32:39 has no hits.

GH03493.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:33:18 Download gff for GH03493.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19392665..19393524 1..860 99 -> Plus
chr2L 19393585..19393780 861..1056 100 -> Plus
chr2L 19393839..19394699 1057..1917 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:10:43 Download gff for GH03493.complete
Subject Subject Range Query Range Percent Splice Strand
CG31798-RA 1..1476 74..1549 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:12:31 Download gff for GH03493.complete
Subject Subject Range Query Range Percent Splice Strand
CG31798-RA 1..1476 74..1549 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:55:44 Download gff for GH03493.complete
Subject Subject Range Query Range Percent Splice Strand
CG31798-RA 1..1476 74..1549 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:57:05 Download gff for GH03493.complete
Subject Subject Range Query Range Percent Splice Strand
CG31798-RA 1..1476 74..1549 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:36:28 Download gff for GH03493.complete
Subject Subject Range Query Range Percent Splice Strand
CG31798-RA 1..1476 74..1549 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:07:23 Download gff for GH03493.complete
Subject Subject Range Query Range Percent Splice Strand
CG31798-RA 1..1913 5..1917 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:12:31 Download gff for GH03493.complete
Subject Subject Range Query Range Percent Splice Strand
CG31798-RA 1..1913 5..1917 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:55:44 Download gff for GH03493.complete
Subject Subject Range Query Range Percent Splice Strand
CG31798-RA 1..1913 5..1917 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:57:05 Download gff for GH03493.complete
Subject Subject Range Query Range Percent Splice Strand
CG31798-RA 1..1913 5..1917 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:36:28 Download gff for GH03493.complete
Subject Subject Range Query Range Percent Splice Strand
CG31798-RA 1..1913 5..1917 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:33:18 Download gff for GH03493.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19394156..19395015 1..860 100 -> Plus
2L 19395076..19395271 861..1056 100 -> Plus
2L 19395330..19396190 1057..1917 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:33:18 Download gff for GH03493.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19394156..19395015 1..860 100 -> Plus
2L 19395076..19395271 861..1056 100 -> Plus
2L 19395330..19396190 1057..1917 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:33:18 Download gff for GH03493.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19394156..19395015 1..860 100 -> Plus
2L 19395076..19395271 861..1056 100 -> Plus
2L 19395330..19396190 1057..1917 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:55:44 Download gff for GH03493.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19394156..19395015 1..860 100 -> Plus
arm_2L 19395076..19395271 861..1056 100 -> Plus
arm_2L 19395330..19396190 1057..1917 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:32:25 Download gff for GH03493.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19395076..19395271 861..1056 100 -> Plus
2L 19394156..19395015 1..860 100 -> Plus
2L 19395330..19396190 1057..1917 100   Plus

GH03493.pep Sequence

Translation from 73 to 1548

> GH03493.pep
MSLQWQNEVVRITRQVKRNLPHRNFREINFDRETIRQGITPLTYDEARRL
KGPVFEALEDELRRAGCTMLPEFLHCLATKENALFESLNIRERLSDDSEL
LYGMVDRLRDAELAVCLNKHRGLKKCFGLFFETMQLLEPYRQKYAYALVA
LNEHIISLCRNIAGQEHDAAEYISRIYYIYSMYLVNTGQRTSAINFLQIA
MDLVRGHVWTAEVGMPAGSLTLHELVAQNLARQLLIQGKSIVRQHPEDAV
AMARRATVLIAEIGRDKNMEIFCDTFLERAYFLMEIGNFNSAQQCLEQIK
TQILACTEYRFVKLNIKYYLIQGQCSEIFEHVEKATSCYKRALRLSRLYT
HRDLEAEILLHLGKIFAKDTQMTSIAKKCYEHAKRIYVDFNDLHSRKMAN
YLQAKLMADEITPLYMAMLKSSTTRYCAFFNLRQWKNRCRPFWKRLGDEI
IKQETDSIYCLLDEEKEDPGHDVAPYDDIDLKTFKLAEGDI*

GH03493.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14717-PA 488 GF14717-PA 1..488 1..491 2113 79.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21173-PA 491 GG21173-PA 1..491 1..491 2593 97.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14806-PA 489 GH14806-PA 5..489 6..491 1602 60.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG31798-PB 491 CG31798-PB 1..491 1..491 2561 100 Plus
CG31798-PA 491 CG31798-PA 1..491 1..491 2561 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11509-PA 490 GI11509-PA 5..489 6..491 1667 63.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21205-PA 489 GL21205-PA 3..489 4..491 1957 73 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16484-PA 489 GA16484-PA 3..489 4..491 1956 73 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17340-PA 491 GM17340-PA 1..491 1..491 2615 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24199-PA 491 GD24199-PA 1..491 1..491 2606 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13701-PA 489 GJ13701-PA 5..489 6..491 1683 63.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23833-PA 488 GK23833-PA 14..488 15..489 1705 65.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13246-PA 491 GE13246-PA 1..491 1..491 2597 97.8 Plus

GH03493.hyp Sequence

Translation from 73 to 1548

> GH03493.hyp
MSLQWQNEVVRITRQVKRNLPHRNFREINFDRETIRQGITPLTYDEARRL
KGPVFEALEDELRRAGCTMLPEFLHCLATKENALFESLNIRERLSDDSEL
LYGMVDRLRDAELAVCLNKHRGLKKCFGLFFETMQLLEPYRQKYAYALVA
LNEHIISLCRNIAGQEHDAAEYISRIYYIYSMYLVNTGQRTSAINFLQIA
MDLVRGHVWTAEVGMPAGSLTLHELVAQNLARQLLIQGKSIVRQHPEDAV
AMARRATVLIAEIGRDKNMEIFCDTFLERAYFLMEIGNFNSAQQCLEQIK
TQILACTEYRFVKLNIKYYLIQGQCSEIFEHVEKATSCYKRALRLSRLYT
HRDLEAEILLHLGKIFAKDTQMTSIAKKCYEHAKRIYVDFNDLHSRKMAN
YLQAKLMADEITPLYMAMLKSSTTRYCAFFNLRQWKNRCRPFWKRLGDEI
IKQETDSIYCLLDEEKEDPGHDVAPYDDIDLKTFKLAEGDI*

GH03493.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31798-PB 491 CG31798-PB 1..491 1..491 2561 100 Plus
CG31798-PA 491 CG31798-PA 1..491 1..491 2561 100 Plus