Clone GH03502 Report

Search the DGRC for GH03502

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:35
Well:2
Vector:pOT2
Associated Gene/TranscriptPpcs-RA
Protein status:GH03502.pep: gold
Preliminary Size:2160
Sequenced Size:2174

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5629 2000-02-14 Blastp of sequenced clone
CG5629 2003-01-01 Sim4 clustering to Release 3
CG5629 2008-04-29 Release 5.5 accounting
CG5629 2008-08-15 Release 5.9 accounting
CG5629 2008-12-18 5.12 accounting

Clone Sequence Records

GH03502.complete Sequence

2174 bp (2174 high quality bases) assembled on 2000-02-14

GenBank Submission: AF132150

> GH03502.complete
CCAACGCGTTTTTTTTTTTTGGCCTGCACTTTGAACCCCGAGGTTTCGTG
CGAATAAAGATACGGATTTGAGTGCGCCTGTCCACATTCCCGCTCGTCCC
GCTCCGCCATCCATCGCTGCCTATCGCATTTTCGGTTCAGAATCCCGCGG
ACCTTGCTGCCGTGCACATCGCATCGCATTTCCACAGCTGCGTTTTTCAG
CATTTTCGTTCGCTCTCTCTCTCTCCGGTTTTTCAGAGCGCTCCGTTCCG
CTCTCCCGCTCGCGCGCGCTCCCCTTAACGGTTCCATTGATAAGCAGCGC
CACCCGCAGCCCCTGCCCCGCCCCCCTGCCACGCATATTCCGCCCTTCGC
ATTTCGGAAACTGCAAAAAAAAACCAAACCAAAGCAAAGCAAAAGCAAAT
CAATCAATTAAGATAGTACGCCGAATAGTGCAGTGCGTGTGTTAATTAAT
TTTGGTTGCCATTTCGCACATTCTGTATTTATTAATTGGCAGTGCATAGC
TTCCGGCGGAAGAGGGCAACTTTCCGTTCATTTTCGAGCTTCCGTTTGTC
GGCCAATTAGCAGCAGGTCGACAAAGAAAAAGCAAAAACAAGCGTAAAGG
ATAAGCCAACATGACGCACTGGGAGGACTTCTACAACACGCACCTGCCGC
CCGCGGACTTCGAGGACAATCGCTCCCTGCTCAAGGAGTTCTGCGAACGG
CACAACAAGCTCCAGAATCGCATCGTCCTCGTCACGTCCGGTGGCACCAC
AGTTCCCCTGGAGCACAATACGGTGCGGTTTGTGGACAATTTTAGTGCTG
GAACGCGTGGCTCCGCCTCGGCGGAATACTTCCTCGACCACGACTATGCC
GTGATTTTCATGCATCGCCACAAGTCGCTGGAGCCCTTCACGCGCCACTT
CACCGGCCAGCAGTTCTTCGACATGCTGGACATTGCGGACAACAGCCAGA
GTTCGACGATAGCCATCAAACCGGATTCGGTGGACGTGTTTGCTCCGGTG
CTGGCCAAATACAAGATAGCCCGCGAAACGCAGATGATCCTGTACGTGAA
CTTCACCAGCGTGGTGGACTACATGTGGCTGCTCCGCGCCGCCTGCGAGT
GCCTGGCCGCCTTCGAGGAGCGAGCCGTGCTCTACCTAGCCGCAGCCGTA
TCCGATTTCTACATACCCGAGGACATGATGCCCACCCACAAAATGCAATC
AGGAGATGGAGCGCCGACGATTTCGCTGCAGCTGGTGCCAAAAATGCTGG
CCCCCCTCGCCAGTTTGTGGGTCCCGCACGCCTTTGTGGTGTCCTTTAAA
CTGGAAACGGACGAGAGCCTATTGATTGTGAAGGCACGTGACAGTCTCAA
CAAATACAAGCACAAGCTGGTCATTGCCAATGTGCTGCAGACACGCAAGC
ATCGCGTGGTGTTCGTCACGCCCACAGATTCCTACGAGCTGCATTTGACT
CGCGAACAGACGCTGCAAGGACTCGAGATCGAGGAGCCCATCGTGGCCGA
TGTGGTGCAAAAGCACGGCGAGTTCATCAGTAACGCTCAACAGCGCCAAT
GACCGTTGTCGATGCGCCGGAGGCCACAGACGCAGCATCAGCAGCACCAC
CACCAACAACTGGCCACCGGTGACGAGGACGAGGATGGCGGCGATCTTGA
TCGGGATCCATATTGCGTGACCAGCTCGCATTATTGCCGTGTTCTGAATC
CGGGCACGCCAGGCTTTGCCCGCAAATATTGAGCAGGTTATAGTCCATAG
TGTATACTGGCATGTGGATGACAGACATTTACATTCGATTCATCCTTGCC
CTTGGACTTTGAGTTCCCGCCACAATTTAGCTATCTATTTATGGTCGCGC
CTCATAATTGAGGTGGCACCGCTCCATTAGTCCATTATCCTGTTGTTATT
ATTATTTTGGTATTAGTTAATGTATTGGCCCTATTGTTGTCCTGAGAAAT
GATGTCACTTGTATGTATCCGCCATTCCCTTGGCTCCTTTTCTTATCTTC
CTTTGTCTGCCGGCACGTTTATGTCATCGAGTATACGCAGCGTGTTGCGC
AGACATCAATAAGCGATTTTGATTTATGTTTGTGACAGAGCTTATGATGC
TTATACATTTAATGAAGCATCGATCGATCCGGCGAACTGGAATTTAAATC
CCAAAAAAAAAAAAAAAAAAAAAA

GH03502.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
Ppcs.a 3954 Ppcs.a 313..2465 1..2153 10765 100 Plus
Ppcs.d 4053 Ppcs.d 396..2548 1..2153 10765 100 Plus
Ppcs.c 4406 Ppcs.c 313..2465 1..2153 10765 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 14971113..14971847 736..1 3540 99 Minus
chr3R 27901430 chr3R 14964981..14965629 2152..1504 3245 100 Minus
chr3R 27901430 chr3R 14969459..14969903 1180..736 2180 99.3 Minus
chr3R 27901430 chr3R 14966073..14966259 1366..1180 935 100 Minus
chr3R 27901430 chr3R 14965864..14966005 1506..1365 710 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:29:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19147135..19147870 736..1 3680 100 Minus
3R 32079331 3R 19140995..19141644 2153..1504 3250 100 Minus
3R 32079331 3R 19145481..19145925 1180..736 2225 100 Minus
3R 32079331 3R 19142088..19142274 1366..1180 935 100 Minus
3R 32079331 3R 19141879..19142020 1506..1365 710 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 18887966..18888701 736..1 3680 100 Minus
3R 31820162 3R 18881826..18882475 2153..1504 3250 100 Minus
3R 31820162 3R 18886312..18886756 1180..736 2225 100 Minus
3R 31820162 3R 18882919..18883105 1366..1180 935 100 Minus
3R 31820162 3R 18882710..18882851 1506..1365 710 100 Minus
Blast to na_te.dros performed 2019-03-15 12:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2267..2397 1476..1610 125 57 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1177..1228 1873..1926 120 76.4 Plus
invader3 5484 invader3 INVADER3 5484bp 5044..5084 1925..1884 117 78.6 Minus

GH03502.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:07:47 Download gff for GH03502.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 14964981..14965628 1505..2152 100 <- Minus
chr3R 14965866..14966003 1367..1504 100 <- Minus
chr3R 14966073..14966258 1181..1366 100 <- Minus
chr3R 14969459..14969902 737..1180 99 <- Minus
chr3R 14971113..14971847 1..736 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:10:44 Download gff for GH03502.complete
Subject Subject Range Query Range Percent Splice Strand
CG5629-RB 1..942 611..1552 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:29:26 Download gff for GH03502.complete
Subject Subject Range Query Range Percent Splice Strand
Ppcs-RA 1..942 611..1552 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:37:25 Download gff for GH03502.complete
Subject Subject Range Query Range Percent Splice Strand
Ppcs-RC 1..1122 611..1732 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:02:53 Download gff for GH03502.complete
Subject Subject Range Query Range Percent Splice Strand
CG5629-RB 1..942 611..1552 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:51:39 Download gff for GH03502.complete
Subject Subject Range Query Range Percent Splice Strand
Ppcs-RC 1..1122 611..1732 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:29:53 Download gff for GH03502.complete
Subject Subject Range Query Range Percent Splice Strand
CG5629-RB 38..2189 1..2152 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:29:26 Download gff for GH03502.complete
Subject Subject Range Query Range Percent Splice Strand
Ppcs-RA 38..2189 1..2152 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:37:25 Download gff for GH03502.complete
Subject Subject Range Query Range Percent Splice Strand
Ppcs-RA 41..2192 1..2152 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:02:53 Download gff for GH03502.complete
Subject Subject Range Query Range Percent Splice Strand
CG5629-RB 38..2189 1..2152 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:51:39 Download gff for GH03502.complete
Subject Subject Range Query Range Percent Splice Strand
Ppcs-RA 41..2192 1..2152 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:07:47 Download gff for GH03502.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19140996..19141643 1505..2152 100 <- Minus
3R 19141881..19142018 1367..1504 100 <- Minus
3R 19142088..19142273 1181..1366 100 <- Minus
3R 19145481..19145924 737..1180 100 <- Minus
3R 19147135..19147870 1..736 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:07:47 Download gff for GH03502.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19140996..19141643 1505..2152 100 <- Minus
3R 19141881..19142018 1367..1504 100 <- Minus
3R 19142088..19142273 1181..1366 100 <- Minus
3R 19145481..19145924 737..1180 100 <- Minus
3R 19147135..19147870 1..736 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:07:47 Download gff for GH03502.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19140996..19141643 1505..2152 100 <- Minus
3R 19141881..19142018 1367..1504 100 <- Minus
3R 19142088..19142273 1181..1366 100 <- Minus
3R 19145481..19145924 737..1180 100 <- Minus
3R 19147135..19147870 1..736 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:37:25 Download gff for GH03502.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14966718..14967365 1505..2152 100 <- Minus
arm_3R 14967603..14967740 1367..1504 100 <- Minus
arm_3R 14967810..14967995 1181..1366 100 <- Minus
arm_3R 14971203..14971646 737..1180 100 <- Minus
arm_3R 14972857..14973592 1..736 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:40:52 Download gff for GH03502.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18881827..18882474 1505..2152 100 <- Minus
3R 18882712..18882849 1367..1504 100 <- Minus
3R 18882919..18883104 1181..1366 100 <- Minus
3R 18886312..18886755 737..1180 100 <- Minus
3R 18887966..18888701 1..736 100   Minus

GH03502.hyp Sequence

Translation from 610 to 1551

> GH03502.hyp
MTHWEDFYNTHLPPADFEDNRSLLKEFCERHNKLQNRIVLVTSGGTTVPL
EHNTVRFVDNFSAGTRGSASAEYFLDHDYAVIFMHRHKSLEPFTRHFTGQ
QFFDMLDIADNSQSSTIAIKPDSVDVFAPVLAKYKIARETQMILYVNFTS
VVDYMWLLRAACECLAAFEERAVLYLAAAVSDFYIPEDMMPTHKMQSGDG
APTISLQLVPKMLAPLASLWVPHAFVVSFKLETDESLLIVKARDSLNKYK
HKLVIANVLQTRKHRVVFVTPTDSYELHLTREQTLQGLEIEEPIVADVVQ
KHGEFISNAQQRQ*

GH03502.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
Ppcs-PD 313 CG5629-PD 1..313 1..313 1625 100 Plus
Ppcs-PA 313 CG5629-PA 1..313 1..313 1625 100 Plus
Ppcs-PC 373 CG5629-PC 1..313 1..313 1625 100 Plus

GH03502.pep Sequence

Translation from 610 to 1551

> GH03502.pep
MTHWEDFYNTHLPPADFEDNRSLLKEFCERHNKLQNRIVLVTSGGTTVPL
EHNTVRFVDNFSAGTRGSASAEYFLDHDYAVIFMHRHKSLEPFTRHFTGQ
QFFDMLDIADNSQSSTIAIKPDSVDVFAPVLAKYKIARETQMILYVNFTS
VVDYMWLLRAACECLAAFEERAVLYLAAAVSDFYIPEDMMPTHKMQSGDG
APTISLQLVPKMLAPLASLWVPHAFVVSFKLETDESLLIVKARDSLNKYK
HKLVIANVLQTRKHRVVFVTPTDSYELHLTREQTLQGLEIEEPIVADVVQ
KHGEFISNAQQRQ*

GH03502.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18942-PA 313 GF18942-PA 1..313 1..313 1685 99.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16174-PA 313 GG16174-PA 1..313 1..313 1688 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18479-PA 315 GH18479-PA 1..315 1..313 1622 95.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
Ppcs-PD 313 CG5629-PD 1..313 1..313 1625 100 Plus
Ppcs-PC 373 CG5629-PC 1..313 1..313 1625 100 Plus
Ppcs-PA 313 CG5629-PA 1..313 1..313 1625 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24057-PA 313 GI24057-PA 1..313 1..313 1661 98.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23707-PA 313 GL23707-PA 1..313 1..313 1657 97.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19016-PA 313 GA19016-PA 1..313 1..313 1657 97.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10046-PA 313 GM10046-PA 1..313 1..313 1655 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20133-PA 313 GD20133-PA 1..313 1..313 1688 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23683-PA 313 GJ23683-PA 1..313 1..313 1661 98.1 Plus
Dvir\GJ11210-PA 62 GJ11210-PA 1..53 142..194 260 92.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14408-PA 313 GK14408-PA 1..313 1..313 1654 97.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25151-PA 313 GE25151-PA 1..313 1..313 1688 100 Plus
Dyak\GE11083-PA 79 GE11083-PA 1..72 1..68 237 69.4 Plus