Clone GH03511 Report

Search the DGRC for GH03511

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:35
Well:11
Vector:pOT2
Associated Gene/TranscriptCp110-RA
Protein status:GH03511.pep: gold
Preliminary Size:2937
Sequenced Size:2773

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14617 2001-07-04 Blastp of sequenced clone
CG14617 2008-04-29 Release 5.5 accounting
CG14617 2008-08-15 Release 5.9 accounting
CG14617 2008-12-18 5.12 accounting

Clone Sequence Records

GH03511.complete Sequence

2773 bp (2773 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047529

> GH03511.complete
CCGTTTGAAAATAAATGTTTTCCCCAGCATTAAAGCAGCATTTCTCATTG
GCTCTTGATGGTAGCTGCGATCCACGGTAGAAACATTGAATACAAAACTC
TCAACGATTCGGGATATCATTTGATTGATGTAATGAACTCTTCAGAGGTT
TCCTAATTTTTGGCGGGAAGTCGAGGGCTCCCTAGTGCCATCGTCATCTC
TAATGGCAACTAAAACATAGCAGACATTTAATGAACTTTCACAAAACACC
TAGATTCAGCTGACCTCTGAGAAGGCTTCCTGACATTTCGACGTCCCAAC
AAAAATTCCCAGTAGCAAAACACCAATGGATGCGACGTGGGCAATGGAGC
AGCTGCTGTCTGCAGTTGAGATGGGAGGTAGCCACAGCGAGGCCACCACA
CCAACGGCCACGACCACCATATCGATCTGGAGCGCCCCCTCCGAGGGCAG
TGGCTCTAGTTCCATGGACCCTGTCTCCTTTCGGTTCCACTTGGACGGGC
AGCCTATACTGCCACCGCTGATGACGAGCGCCAAGAAGCGCGAGGTGCAG
CTGGCCCGCCAGATGGCAGAAGCGCTGGAGAAGCGGTACCGCCTGGCCAG
ACACTCGGCGGGATCCGACATGGCCAGTAGGAGAAGTGTGTCACAGCTGC
AGCAGACAGAAACGTTAATCTATGACAGCACACGGGGCCAGGCTCGTCCT
CAGACTCTGGTCTTTGGCAAACAGTTGCCCACCATACAGGTGGATCCTCC
CACGCCTCAACCATTTGTGAAATCAATAGAAAACACTTCCCCAAGGCGGC
ATAATCGCATTACCGATCGTATCCTGCAGTTCGAGCAGTCGGGACTGGGT
AAGCTGCTGCCCAAAGTTCCAGATAAGTGTATCCTGCGCACAAGTCCTGC
GGTAGCCGAAGACCAGCAGGATCAGGATACAAAGGACACAACGGCAAGGG
AGCTCGGCAGTCCACTGGCAGAACCAGCTAATTTTCAGCGTTCGAGAAGT
TTCACACTAGAGGAGCCCTCCCAGGTTCTCGTGGAGCACATGGAGAGGGA
GGCCCTGGCTGTGAAACCCAGCCAGAGTTTGGCCAACTTCGAGAAGCAGA
CCATCGAGTCTCAGGCCAAGCGGGTGAACCGTAGTGCAAGGAGTATTAGC
AGCAAAATTAGCCACAACAGCTACAATAGCAACAGTAGCGCCGCAACCAA
GAGCACCATCGCCACTAAAACCACAACCGCCGGCAGCAGCTGTTCTAGGC
GGGATCGCGAGGTGGAGCGTATAATAGAACGGGCGCTGGACGAGCATGGC
GCTTTGGAAGCCAGCCGCAAGGCAGGAGTGCGCAACTATCTGCGTGGCCA
TCGGGAGCGAATGAATCAATTGGTCATTCACCAGGAGAAGGAACGTCGTC
GCATGCAGGCCGAGTTTGATCATCAGCAGCGTCAGCTCATAGAGGAACTG
TGTGCCGAAATTGATGTTTCCTCGGCCACCGAAAATCCTGACAGTCTGAT
ATCGCAAAGCACCAGTACGGGAGACCTGCAGCGTTTTTCCCCCTCGCCTA
CGTTACCCTCCTTTTCAGAGGACATAGAAGACTTTCCGACGATGGAAGAC
AAGTGCCAAATTGCGGGGCCTTCTTCCGCTCGCAAGAGGCTGTTTAGTCC
AAAACCATCAAAGGACTCGGAACCGCAGCTGCTCAGTGCCCCCAGCACAC
CGCGATCGTTGCCCCTCCGGAACAGCAGCTTAACCAATAGCAGACGAAGT
GTCCAAGTTGTCCGGCGCCGATCGCAATCTGTGGGCGGTAGTCTAGTAAA
AACAATCACCGCAGCAGACCGCGAGGTGAAGAAATCGCCAGCGAAGCCTG
GAGGTGGAGCAGGACGACCGAAAAGTTCCCCGGGAAAAAATAGCTCCATT
ATAGCGAAAAGGGGAAGCGCCCCACCAAAAAGCGCCTCACCGACCAAGCG
GCTGGGCAATCGCAAGAAGCCCTAGCAATTCGGGTAGTCAGTTATGCAAG
TGCCTTAACAAAGACTGCGAGGAAATCGAGGGACCAAGCCTCTAGCACCA
GTAGCTAACCTAATTACTAACCCAACTAGCAAGTGCCTTCGTTCCCTGTT
TAATTTCGCCTCTAATCCCTGCCAGAAATATGTCGAGCTGAAACAGGAAG
AGCGCCAGTGGGCGGCCACACGTATTAATGCCGGTGTGCGAGGATTTTTG
GTCCGCCGGCTTTTTGCAACCGAGCAAGTGCAGCGCATTGTCCAAACCAT
CAGAGACACCCTGATCTTCGTGTTGAACCTGCACCTGGAAACTTGTGGAC
ATGGCCTGGATGCAGAGGAGCCTGCAAACTTGCGCCTCAAGGCGCGATTG
CTTCAACAGAACAGCTGTTTGGCAAAAGCCCGCGTGATTTTTTGCAGCCA
AGCTTTCAAGACATTGCGGAGCTTTCTAGACAAATTCGCCCTGAAAGCTG
CGGCGGATTGCCAAAACAAACGGAACTTTTAAAGCGAGTAGTCGTGTGTG
CGTGTGATGGCCTTAAAAGAAAACAGCAAAGGCAGACAAATAATCAAAAG
CGAGAGAAAACTAGTTTAATAACAATTAATTATTAGTGAGCACGTAACCC
ACAGCAATTGGCCGACCTCCCGCTCATCCTGTTATTCACCCAGCTGCCCG
CGTGCCTTGCCCACCCAATTCCATAATTCCGCCGGCGGCGAATTTAGAAC
GACACACCAAATTGAAAAAATAATAATACAAATAATAAAACCACACCAAT
AACAGAAAAAAAAAAAAAAAAAA

GH03511.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
Cp110-RA 2760 Cp110-RA 1..2756 1..2756 13780 100 Plus
Cp110-RE 2902 Cp110-RE 1..2359 1..2359 11795 100 Plus
Cp110-RB 2624 Cp110-RB 141..1847 254..1960 8535 100 Plus
Cp110-RE 2902 Cp110-RE 2500..2898 2358..2756 1995 100 Plus
Cp110-RB 2624 Cp110-RB 2222..2620 2358..2756 1995 100 Plus
Cp110-RB 2624 Cp110-RB 1848..2081 2126..2359 1170 100 Plus
Cp110-RB 2624 Cp110-RB 12..140 1..129 645 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 21879052..21880492 520..1960 7205 100 Plus
chrX 22417052 chrX 21883020..21883419 2356..2755 2000 100 Plus
chrX 22417052 chrX 21881203..21881601 1961..2359 1995 100 Plus
chrX 22417052 chrX 21878378..21878717 1..340 1700 100 Plus
chrX 22417052 chrX 21878807..21878992 339..524 915 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:29:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22483086..22484526 520..1960 7205 100 Plus
X 23542271 X 22487054..22487454 2356..2756 2005 100 Plus
X 23542271 X 22485237..22485635 1961..2359 1995 100 Plus
X 23542271 X 22482412..22482751 1..340 1700 100 Plus
X 23542271 X 22482841..22483026 339..524 915 99.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 22468178..22469618 520..1960 7205 100 Plus
X 23527363 X 22472146..22472546 2356..2756 2005 100 Plus
X 23527363 X 22470329..22470727 1961..2359 1995 100 Plus
X 23527363 X 22467504..22467843 1..340 1700 100 Plus
X 23527363 X 22467933..22468118 339..524 915 99.4 Plus
Blast to na_te.dros performed 2019-03-15 12:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 5266..5304 2510..2548 123 79.5 Plus
accord2 7650 accord2 QBERT 7650bp 2734..2780 258..212 118 72.3 Minus

GH03511.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:07:50 Download gff for GH03511.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 21878808..21878988 340..520 100 -> Plus
chrX 21878378..21878716 1..339 100 -> Plus
chrX 21879053..21880492 521..1960 100 -> Plus
chrX 21881203..21881601 1961..2359 100 -> Plus
chrX 21883024..21883419 2360..2755 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:10:46 Download gff for GH03511.complete
Subject Subject Range Query Range Percent Splice Strand
CG14617-RA 1..1650 326..1975 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:29:56 Download gff for GH03511.complete
Subject Subject Range Query Range Percent Splice Strand
Cp110-RA 1..1650 326..1975 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:37:28 Download gff for GH03511.complete
Subject Subject Range Query Range Percent Splice Strand
Cp110-RC 1..1650 326..1975 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:03:22 Download gff for GH03511.complete
Subject Subject Range Query Range Percent Splice Strand
CG14617-RA 1..1650 326..1975 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:51:45 Download gff for GH03511.complete
Subject Subject Range Query Range Percent Splice Strand
Cp110-RC 1..1650 326..1975 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:30:33 Download gff for GH03511.complete
Subject Subject Range Query Range Percent Splice Strand
CG14617-RA 1..2755 1..2755 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:29:56 Download gff for GH03511.complete
Subject Subject Range Query Range Percent Splice Strand
Cp110-RA 1..2755 1..2755 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:37:28 Download gff for GH03511.complete
Subject Subject Range Query Range Percent Splice Strand
Cp110-RA 18..2772 1..2755 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:03:22 Download gff for GH03511.complete
Subject Subject Range Query Range Percent Splice Strand
CG14617-RA 1..2755 1..2755 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:51:45 Download gff for GH03511.complete
Subject Subject Range Query Range Percent Splice Strand
Cp110-RA 18..2772 1..2755 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:07:50 Download gff for GH03511.complete
Subject Subject Range Query Range Percent Splice Strand
X 22482412..22482750 1..339 100 -> Plus
X 22482842..22483022 340..520 100 -> Plus
X 22483087..22484526 521..1960 100 -> Plus
X 22485237..22485635 1961..2359 100 -> Plus
X 22487058..22487453 2360..2755 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:07:50 Download gff for GH03511.complete
Subject Subject Range Query Range Percent Splice Strand
X 22482412..22482750 1..339 100 -> Plus
X 22482842..22483022 340..520 100 -> Plus
X 22483087..22484526 521..1960 100 -> Plus
X 22485237..22485635 1961..2359 100 -> Plus
X 22487058..22487453 2360..2755 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:07:50 Download gff for GH03511.complete
Subject Subject Range Query Range Percent Splice Strand
X 22482412..22482750 1..339 100 -> Plus
X 22482842..22483022 340..520 100 -> Plus
X 22483087..22484526 521..1960 100 -> Plus
X 22485237..22485635 1961..2359 100 -> Plus
X 22487058..22487453 2360..2755 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:37:28 Download gff for GH03511.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21884248..21884586 1..339 100 -> Plus
arm_X 21884678..21884858 340..520 100 -> Plus
arm_X 21884923..21886362 521..1960 100 -> Plus
arm_X 21887073..21887471 1961..2359 100 -> Plus
arm_X 21888894..21889289 2360..2755 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:41:26 Download gff for GH03511.complete
Subject Subject Range Query Range Percent Splice Strand
X 22467504..22467842 1..339 100 -> Plus
X 22467934..22468114 340..520 100 -> Plus
X 22468179..22469618 521..1960 100 -> Plus
X 22470329..22470727 1961..2359 100 -> Plus
X 22472150..22472545 2360..2755 100   Plus

GH03511.pep Sequence

Translation from 325 to 1974

> GH03511.pep
MDATWAMEQLLSAVEMGGSHSEATTPTATTTISIWSAPSEGSGSSSMDPV
SFRFHLDGQPILPPLMTSAKKREVQLARQMAEALEKRYRLARHSAGSDMA
SRRSVSQLQQTETLIYDSTRGQARPQTLVFGKQLPTIQVDPPTPQPFVKS
IENTSPRRHNRITDRILQFEQSGLGKLLPKVPDKCILRTSPAVAEDQQDQ
DTKDTTARELGSPLAEPANFQRSRSFTLEEPSQVLVEHMEREALAVKPSQ
SLANFEKQTIESQAKRVNRSARSISSKISHNSYNSNSSAATKSTIATKTT
TAGSSCSRRDREVERIIERALDEHGALEASRKAGVRNYLRGHRERMNQLV
IHQEKERRRMQAEFDHQQRQLIEELCAEIDVSSATENPDSLISQSTSTGD
LQRFSPSPTLPSFSEDIEDFPTMEDKCQIAGPSSARKRLFSPKPSKDSEP
QLLSAPSTPRSLPLRNSSLTNSRRSVQVVRRRSQSVGGSLVKTITAADRE
VKKSPAKPGGGAGRPKSSPGKNSSIIAKRGSAPPKSASPTKRLGNRKKP*

GH03511.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21003-PA 734 GF21003-PA 1..504 7..474 1114 52.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19745-PA 664 GG19745-PA 1..547 1..546 2080 79.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12437-PA 817 GH12437-PA 5..528 2..409 350 29 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
Cp110-PG 549 CG14617-PG 1..549 1..549 2760 100 Plus
Cp110-PE 549 CG14617-PE 1..549 1..549 2760 100 Plus
Cp110-PC 549 CG14617-PC 1..549 1..549 2760 100 Plus
Cp110-PA 549 CG14617-PA 1..549 1..549 2760 100 Plus
Cp110-PH 666 CG14617-PH 1..546 1..546 2740 99.8 Plus
Cp110-PD 666 CG14617-PD 1..546 1..546 2740 99.8 Plus
Cp110-PB 666 CG14617-PB 1..546 1..546 2740 99.8 Plus
Cp110-PF 550 CG14617-PF 1..550 1..549 2735 99.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16005-PA 829 GI16005-PA 5..616 2..465 456 29.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13298-PA 792 GL13298-PA 42..575 37..474 621 36.5 Plus
Dper\GL16912-PA 517 GL16912-PA 51..357 84..408 247 30.8 Plus
Dper\GL18866-PA 320 GL18866-PA 230..303 310..383 157 46.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13116-PA 793 GA13116-PA 42..575 37..474 621 36.3 Plus
Dpse\GA25835-PA 327 GA25835-PA 237..309 310..382 162 50 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\Cp110-PA 669 GM11731-PA 1..549 1..546 2398 88.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Cp110-PA 672 GD17545-PA 1..552 1..546 2376 89 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19161-PA 778 GJ19161-PA 5..539 2..440 488 32.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25771-PA 721 GK25771-PA 48..526 53..474 680 40.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17940-PA 685 GE17940-PA 1..568 1..546 2068 78.6 Plus

GH03511.hyp Sequence

Translation from 325 to 1974

> GH03511.hyp
MDATWAMEQLLSAVEMGGSHSEATTPTATTTISIWSAPSEGSGSSSMDPV
SFRFHLDGQPILPPLMTSAKKREVQLARQMAEALEKRYRLARHSAGSDMA
SRRSVSQLQQTETLIYDSTRGQARPQTLVFGKQLPTIQVDPPTPQPFVKS
IENTSPRRHNRITDRILQFEQSGLGKLLPKVPDKCILRTSPAVAEDQQDQ
DTKDTTARELGSPLAEPANFQRSRSFTLEEPSQVLVEHMEREALAVKPSQ
SLANFEKQTIESQAKRVNRSARSISSKISHNSYNSNSSAATKSTIATKTT
TAGSSCSRRDREVERIIERALDEHGALEASRKAGVRNYLRGHRERMNQLV
IHQEKERRRMQAEFDHQQRQLIEELCAEIDVSSATENPDSLISQSTSTGD
LQRFSPSPTLPSFSEDIEDFPTMEDKCQIAGPSSARKRLFSPKPSKDSEP
QLLSAPSTPRSLPLRNSSLTNSRRSVQVVRRRSQSVGGSLVKTITAADRE
VKKSPAKPGGGAGRPKSSPGKNSSIIAKRGSAPPKSASPTKRLGNRKKP*

GH03511.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
Cp110-PG 549 CG14617-PG 1..549 1..549 2760 100 Plus
Cp110-PE 549 CG14617-PE 1..549 1..549 2760 100 Plus
Cp110-PC 549 CG14617-PC 1..549 1..549 2760 100 Plus
Cp110-PA 549 CG14617-PA 1..549 1..549 2760 100 Plus
Cp110-PH 666 CG14617-PH 1..546 1..546 2740 99.8 Plus