Clone GH03514 Report

Search the DGRC for GH03514

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:35
Well:14
Vector:pOT2
Associated Gene/TranscriptVhaPPA1-1-RA
Protein status:GH03514.pep: gold
Preliminary Size:2200
Sequenced Size:1326

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7007 2001-01-01 Release 2 assignment
CG7007 2001-07-04 Blastp of sequenced clone
CG7007 2003-01-01 Sim4 clustering to Release 3
VhaPPA1-1 2008-04-29 Release 5.5 accounting
VhaPPA1-1 2008-08-15 Release 5.9 accounting
VhaPPA1-1 2008-12-18 5.12 accounting

Clone Sequence Records

GH03514.complete Sequence

1326 bp (1326 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060235

> GH03514.complete
TTTTTTCGCACGGAGCAGTCACCTGTCGGCCAAGAAAATACAATTACGCC
TGCAATTCGACAGTGAACAAATAGCAAGATGGCGGCCCAAATACGCACCG
TGGTGTCCCAAACGTTCCTGTGGCTCTTCCTCGCCGTGGCCACCATCCTG
ACCCTGTACTTCGTGATGACGGGCAAGGGCGAGCGGGTGAGCGTGGGCTG
GTTCCTGGCCTCCTCAAACCCGTACATGTGGGCCTGCCTGGGCATCGGAC
TCTCCGTCTCGCTGTCCGTCGTGGGCGCCGCCCTGGGCATCCATACGACG
GGCACGAGCATCGTGGGCGGTGGTGTGAAGGCGCCCCGCATCAAGACCAA
GAATCTGATCTCGGTCATCTTCTGCGAGGCCGTGGCCATCTACGGCCTGA
TCACCGCCATCGTTCTGTCCGGCCAGCTGGAGCAGTTCTCGATGGAGACG
GCCCTTTCGCAGGCGGCTATTCAGAACACGAACTGGTTCTCCGGCTACCT
CATCTTCGGTGCTGGCCTGGCTGTCGGCCTGGTCAATCTGTTCTGCGGCA
TTGCTGTGGGCATTGTGGGTTCGGGTGCCGCCCTCTCGGACGCCGCCAAT
GCCGCCCTGTTCGTCAAGATCCTTATTGTGGAGATCTTCGGTTCGGCCAT
CGGTCTGTTCGGCCTCATCGTGGGCATCTACATGACCTCCAAGTCCAAGA
TGGGCGACAAGGAGTAGGCGCCGTCGCCAGCCATGCAGTCCTTCGCCACT
CCATTATCATCACGAAGAACAACACACATCAGAGCATTCCCCCATCCCCA
TGCAGACACGCACGACATCAGTGTTTGTGTATTTTTTTGGAAATTACGAC
TCGCTATACGCAGTTACTGCTTGCAGGAGACGCCCGACAAACCGAAATCC
GATCAGCCGTAACGCTTTAAACTAGGACTTAGTTACTCATTAAGATGATA
GTTGGTTAAGTTGGCAGTTGGTTTTCACGCCTCGCACGCTCGCAGTCACC
AGCATCACTCAATCGACTGTGGAGTGTGCACGGTGTGAAAACGACCGTGA
TTTGTTTATTTCATTTCTTTGCCAAACGAAAGACATCGTGTGTGTGTGTC
TGTGTTTGATTTTAAGCAGTTTGTTATGTTTGTTTCTACGCTGGCTCTTC
AAAGGCTAATTTAAAATGTATTATATTTACTACCGCAAAACGATAAACTT
GTATATTTCAAGCTACTGTTTGAGGCAGCAGTTGTAGATGGTTGCACAGT
CGCATTATTATTATTATAGAAAGTATTCCATATTAAAACAAATAAAATAT
AAAAAAAAAAAAAAAAAAAAAAAAAA

GH03514.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
VhaPPA1-1-RA 1628 VhaPPA1-1-RA 254..1554 1..1301 6505 100 Plus
VhaPPA1-1.b 1624 VhaPPA1-1.b 250..1550 1..1301 6505 100 Plus
VhaPPA1-1.a 1491 VhaPPA1-1.a 177..1473 1..1301 6420 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 10727855..10728535 739..59 3375 99.7 Minus
chr3R 27901430 chr3R 10726977..10727537 1300..740 2775 99.6 Minus
chr3R 27901430 chr3R 10724304..10724454 693..543 395 84.1 Minus
chr3R 27901430 chr3R 10724574..10724801 423..196 345 76.8 Minus
chr3R 27901430 chr3R 10728594..10728652 59..1 295 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:29:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14903212..14903892 739..59 3405 100 Minus
3R 32079331 3R 14902329..14902890 1301..740 2810 100 Minus
3R 32079331 3R 14899657..14899807 693..543 395 84.1 Minus
3R 32079331 3R 14899927..14900154 423..196 345 76.8 Minus
3R 32079331 3R 14903951..14904009 59..1 295 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14644043..14644723 739..59 3405 100 Minus
3R 31820162 3R 14643160..14643721 1301..740 2810 100 Minus
3R 31820162 3R 14640488..14640638 693..543 395 84.1 Minus
3R 31820162 3R 14640758..14640849 423..332 325 90.2 Minus
3R 31820162 3R 14644782..14644840 59..1 295 100 Minus
Blast to na_te.dros performed on 2019-03-16 02:06:29 has no hits.

GH03514.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:07:29 Download gff for GH03514.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 10726977..10727537 740..1300 99 <- Minus
chr3R 10727855..10728534 60..739 99 <- Minus
chr3R 10728594..10728652 1..59 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:10:47 Download gff for GH03514.complete
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 1..639 79..717 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:29:57 Download gff for GH03514.complete
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 1..639 79..717 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:11:13 Download gff for GH03514.complete
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 1..639 79..717 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:03:24 Download gff for GH03514.complete
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 1..639 79..717 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:57:54 Download gff for GH03514.complete
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 1..639 79..717 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:30:34 Download gff for GH03514.complete
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 66..1365 1..1300 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:29:57 Download gff for GH03514.complete
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 66..1365 1..1300 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:11:13 Download gff for GH03514.complete
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 66..1365 1..1300 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:03:24 Download gff for GH03514.complete
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 66..1365 1..1300 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:57:54 Download gff for GH03514.complete
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 53..1352 1..1300 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:07:29 Download gff for GH03514.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14902330..14902890 740..1300 100 <- Minus
3R 14903212..14903891 60..739 100 <- Minus
3R 14903951..14904009 1..59 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:07:29 Download gff for GH03514.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14902330..14902890 740..1300 100 <- Minus
3R 14903212..14903891 60..739 100 <- Minus
3R 14903951..14904009 1..59 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:07:29 Download gff for GH03514.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14902330..14902890 740..1300 100 <- Minus
3R 14903212..14903891 60..739 100 <- Minus
3R 14903951..14904009 1..59 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:11:13 Download gff for GH03514.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10728052..10728612 740..1300 100 <- Minus
arm_3R 10728934..10729613 60..739 100 <- Minus
arm_3R 10729673..10729731 1..59 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:41:27 Download gff for GH03514.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14643161..14643721 740..1300 100 <- Minus
3R 14644043..14644722 60..739 100 <- Minus
3R 14644782..14644840 1..59 100   Minus

GH03514.pep Sequence

Translation from 78 to 716

> GH03514.pep
MAAQIRTVVSQTFLWLFLAVATILTLYFVMTGKGERVSVGWFLASSNPYM
WACLGIGLSVSLSVVGAALGIHTTGTSIVGGGVKAPRIKTKNLISVIFCE
AVAIYGLITAIVLSGQLEQFSMETALSQAAIQNTNWFSGYLIFGAGLAVG
LVNLFCGIAVGIVGSGAALSDAANAALFVKILIVEIFGSAIGLFGLIVGI
YMTSKSKMGDKE*

GH03514.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17169-PA 212 GF17169-PA 1..212 1..212 1040 97.6 Plus
Dana\GF17172-PA 196 GF17172-PA 15..194 29..208 565 68.3 Plus
Dana\GF13808-PA 159 GF13808-PA 5..159 43..205 226 35.5 Plus
Dana\GF25265-PA 157 GF25265-PA 14..157 49..205 203 32.5 Plus
Dana\GF19671-PA 180 GF19671-PA 26..174 45..202 203 33.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20968-PA 212 GG20968-PA 1..212 1..212 1050 98.6 Plus
Dere\GG20990-PA 208 GG20990-PA 27..205 29..207 560 67 Plus
Dere\GG10820-PA 159 GG10820-PA 5..159 43..205 221 34.3 Plus
Dere\GG15505-PA 158 GG15505-PA 14..157 49..205 214 33.5 Plus
Dere\GG22236-PA 158 GG22236-PA 6..158 43..205 204 33.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19517-PA 212 GH19517-PA 1..212 1..212 942 93.4 Plus
Dgri\GH19519-PA 207 GH19519-PA 10..207 13..210 655 66.2 Plus
Dgri\GH22892-PA 161 GH22892-PA 7..161 43..205 214 33.7 Plus
Dgri\GH10920-PA 173 GH10920-PA 20..172 42..206 202 32.1 Plus
Dgri\GH16652-PA 161 GH16652-PA 12..161 45..205 197 33.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
VhaPPA1-1-PB 212 CG7007-PB 1..212 1..212 1050 100 Plus
VhaPPA1-1-PA 212 CG7007-PA 1..212 1..212 1050 100 Plus
VhaPPA1-2-PB 212 CG7026-PB 31..209 29..207 623 67.6 Plus
Vha16-1-PB 159 CG3161-PB 5..159 43..205 251 34.3 Plus
Vha16-1-PA 159 CG3161-PA 5..159 43..205 251 34.3 Plus
Vha16-1-PD 159 CG3161-PD 5..159 43..205 251 34.3 Plus
Vha16-1-PC 159 CG3161-PC 5..159 43..205 251 34.3 Plus
Vha16-4-PA 155 CG9013-PA 17..155 54..205 231 34.2 Plus
Vha16-3-PB 158 CG32090-PB 15..158 49..205 231 31.6 Plus
Vha16-3-PA 158 CG32090-PA 15..158 49..205 231 31.6 Plus
Vha16-5-PA 193 CG6737-PA 42..187 48..202 229 34.4 Plus
Vha16-2-PA 158 CG32089-PA 11..157 46..205 222 30.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22994-PA 212 GI22994-PA 1..212 1..212 936 92 Plus
Dmoj\GI22996-PA 207 GI22996-PA 3..205 5..208 661 68.1 Plus
Dmoj\GI21278-PA 159 GI21278-PA 8..159 46..205 225 34.4 Plus
Dmoj\GI13313-PA 175 GI13313-PA 5..174 28..206 208 30.9 Plus
Dmoj\GI11612-PA 158 GI11612-PA 17..158 51..205 193 32.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21698-PA 212 GL21698-PA 1..212 1..212 933 93.4 Plus
Dper\GL21700-PA 207 GL21700-PA 22..206 24..208 673 72.4 Plus
Dper\GL20293-PA 159 GL20293-PA 7..159 45..205 218 34.8 Plus
Dper\GL26032-PA 182 GL26032-PA 27..177 43..202 208 35.2 Plus
Dper\GL10498-PA 165 GL10498-PA 5..165 33..205 207 32.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20025-PA 212 GA20025-PA 1..212 1..212 933 93.4 Plus
Dpse\GA26375-PA 207 GA26375-PA 22..206 24..208 673 72.4 Plus
Dpse\GA16335-PA 159 GA16335-PA 7..159 45..205 218 34.8 Plus
Dpse\GA21477-PA 165 GA21477-PA 5..165 33..205 208 32.2 Plus
Dpse\GA25245-PA 182 GA25245-PA 27..177 43..202 207 35.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25814-PA 212 GM25814-PA 1..212 1..212 1057 99.5 Plus
Dsec\GM25816-PA 208 GM25816-PA 27..205 29..207 564 67.6 Plus
Dsec\GM20869-PA 159 GM20869-PA 5..159 43..205 221 34.3 Plus
Dsec\GM11483-PA 191 GM11483-PA 35..185 43..202 201 34 Plus
Dsec\GM25274-PA 158 GM25274-PA 7..157 45..205 199 30.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20390-PA 212 GD20390-PA 1..212 1..212 1057 99.5 Plus
Dsim\GD20392-PA 208 GD20392-PA 27..205 29..207 564 67.6 Plus
Dsim\GD10321-PA 159 GD10321-PA 5..159 43..205 221 34.3 Plus
Dsim\GD22230-PA 191 GD22230-PA 35..185 43..202 201 34 Plus
Dsim\GD14308-PA 165 GD14308-PA 7..164 45..205 200 31.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24692-PA 212 GJ24692-PA 1..212 1..212 938 92.5 Plus
Dvir\GJ24694-PA 207 GJ24694-PA 26..205 29..208 652 71.7 Plus
Dvir\GJ20880-PA 158 GJ20880-PA 5..158 44..205 216 33.3 Plus
Dvir\GJ11292-PA 159 GJ11292-PA 6..158 32..205 208 32.8 Plus
Dvir\GJ11291-PA 159 GJ11291-PA 10..159 45..205 196 33.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11008-PA 212 GK11008-PA 1..212 1..212 940 93.4 Plus
Dwil\GK13787-PA 209 GK13787-PA 5..206 11..208 679 68.8 Plus
Dwil\GK19648-PA 159 GK19648-PA 5..159 43..205 223 34.9 Plus
Dwil\GK18316-PA 184 GK18316-PA 38..180 51..204 203 34.4 Plus
Dwil\GK17171-PA 160 GK17171-PA 3..159 44..205 196 33.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26419-PA 212 GE26419-PA 1..212 1..212 1061 100 Plus
Dyak\GE26421-PA 212 GE26421-PA 31..209 29..207 558 67 Plus
Dyak\Vha16-PA 159 GE24687-PA 5..159 43..205 221 34.3 Plus
Dyak\GE14233-PA 158 GE14233-PA 6..158 43..205 202 33.1 Plus
Dyak\GE21813-PA 158 GE21813-PA 14..157 49..205 200 31.6 Plus

GH03514.hyp Sequence

Translation from 78 to 716

> GH03514.hyp
MAAQIRTVVSQTFLWLFLAVATILTLYFVMTGKGERVSVGWFLASSNPYM
WACLGIGLSVSLSVVGAALGIHTTGTSIVGGGVKAPRIKTKNLISVIFCE
AVAIYGLITAIVLSGQLEQFSMETALSQAAIQNTNWFSGYLIFGAGLAVG
LVNLFCGIAVGIVGSGAALSDAANAALFVKILIVEIFGSAIGLFGLIVGI
YMTSKSKMGDKE*

GH03514.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
VhaPPA1-1-PB 212 CG7007-PB 1..212 1..212 1050 100 Plus
VhaPPA1-1-PA 212 CG7007-PA 1..212 1..212 1050 100 Plus
VhaPPA1-2-PB 212 CG7026-PB 31..209 29..207 623 67.6 Plus
Vha16-1-PB 159 CG3161-PB 5..159 43..205 251 34.3 Plus
Vha16-1-PA 159 CG3161-PA 5..159 43..205 251 34.3 Plus