Clone GH03554 Report

Search the DGRC for GH03554

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:35
Well:54
Vector:pOT2
Associated Gene/TranscriptCG16941-RA
Protein status:GH03554.pep: gold
Preliminary Size:4600
Sequenced Size:2558

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16941 2001-01-01 Release 2 assignment
CG16941 2001-07-04 Blastp of sequenced clone
CG16941 2003-01-01 Sim4 clustering to Release 3
CG16941 2008-04-29 Release 5.5 accounting
CG16941 2008-08-15 Release 5.9 accounting
CG16941 2008-12-18 5.12 accounting

Clone Sequence Records

GH03554.complete Sequence

2558 bp (2558 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047530

> GH03554.complete
ATTTTCGGCTAAACAAGCGTTTTCTCATTTCTCAAAAAGCAATCAGATTT
TATCAATAAAAGAGGACGATTTCACCAGCCATGGCAACTTTAGACGCGGA
AGCCAACGAGGAGCAGTTCGGCAATGATCAGCCCAAGTCGATGTCGGGTC
CAATCATTGGGATTATCTATCCGCCGCCGGAAGTTAGAAATATCGTTGAC
AAGACCGCCAGTTTTGTGGCTCGCAATGGACCGGAATTCGAGGCGCGCAT
CCGCCAAAATGAGCTGGGCAATCCAAAGTTTAACTTCTTAAATGGCGGAG
ATCCCTACCACGCATACTACAGACACAAGGTCAACGAGTTCCGCGAGGGC
AATGATGCCGGTATCACTGCCCTTGCCAGCATGAAGCAGCTGGCGGTGAC
CAGTGCCGCCCAACAGCGCCAGCAAGAGCTTCTCAAGCAAGTGGTGGAGC
AGCAGTTCGTACCAAAGGAACCTCCACCTGAATTCGAGTTCATAGCCGAT
CCGCCCTCCATTTCGGCGCTGGATTTGGACATTGTGAAGCTAACTGCTCA
ATTTGTGGCCCGTAACGGCCGACAGTTTCTGACCAATCTTATGAGCCGGG
AGCAGCGTAACTTTCAGTTTGACTTCCTGCGACCCCAGCACTCGCTCTTC
CAGTACTTTACCAAGTTGCTGGAGCAGTATACCAAGGTCTTGATACCTCC
AAAGGATTTGCTGGGCAAACTGCGTTCCGAGAGCGCACCGGGCAGGAGCA
GCATGAACCAGGTGCTGGAGCAGGTTAAATATCGGGCCAACTGGCAGCGT
CACCAAGAAGCACAACGCCGCCGTGAGGAGGAGAAGATCGAAAGGGAGCG
CGTGGCCTATGCCCAAATCGATTGGCATGACTTTGTGGTGGTGGAGACGG
TGGACTATCAGCCATTCGAATCGGGCAACTTCCCGCCACCCACGAATCCC
GACGAGGTAGGAGCCCGTGTGCTAATGGAAGAGCGTCTAATGGACGAAGA
GGGCGATACAGAAATGCAGATCGAGTCGGACGACGAGGGCGACTCCCAGG
CTAACAACCTATTGGACAGCGGTCTGAAACTCTCGCAAATGGAGAACCGT
GTGGGTATACAAATGAAGAACGTATCGTCGTATGGCCAGCCGACTGGCCC
CAAGAGAGACAACACCCAGGTGCAAGACATGGACGAAGCCTCTAGTGATG
AGGACACTCCAACCACTAAGTTGCAGCCATCTGTTGCGCCAATGCTGCCG
CCCACCCACGACAAAGTGGTGGTCAAGAAATACGATCCTAAGGCAACGCA
ACCGAAGCAGGCGCCAATGCCTACGGATGAGTATCTCATCTCGCCGATTA
CAGGAGAGAAAATACCGGCTTCCAAGGTCTCGGAGCACATGCGCATCGGT
CTATTGGATCCACGCTGGGTGGAACAGCGAGACAAGCATACTGTGGAGAA
AATCAATCAAGACAATGTGTTCGCCGCGGGCACTGCCATCGAGGCGAGTC
TCAAGCAACTGGCTGAGCGTCGTACGGATATCTTTGGTGTGGGCGACGAG
GAGACCGTCATTGGTAAGAAGCTCGGCGAAGAGGAGACGAAGAAGGACGA
TCGCGTCACCTGGGACGGACACACGTCCAGCGTGGAGGCGGCCACGAGAG
CAGCACGTGCAAATATCACTCTGGAGGAACAAATTCATCAAATCCACAAG
GTTAAGGGACTGCTGCCCGACGAGGAGAAGGAGAAAATCGGCCCCAAACC
GGTGGGCAACAAGGCGACGCTTTCAGCTCCGCCGCAGCCGTCAACCAAGT
CGCAGCACAGTCACTCCAGCCAGAGTCAACACCACCAAGGTGGCGGAGGT
GGTCACCACGGGCATCATAATCCTCATCATCACCATCCACCGCATCAGCA
GGCGCCACCTCACCAGTCGCACCACCATCACCCGCCGCAGCAGCCTCAAC
CGGTGATGCAGCTGATGCAACTGCGTCCAACCATGATGCAGCCGCCTTTT
GGAGCTGGTGGTGGAGGCTACATGAACATGCAGCCTGGTGGAATCCCTCA
GCAAATTGCACCTGCTCCACCTGTTGATATAATGGAGGAGGAGCCGCCTT
CTAAAAAGATTCGAAGCGAGGACAACCTGATTCCAGAAGCAGACTTTATT
GCCACCCACAAGAGCCCTGTGACCATTCAGGTTTTGGTACCCAATTCCGA
CAAATCAGAGTGGAAGCTTAATGGACAGATGATAGCCGTGACCATGGCAC
TTTCTGAACCCATTGCCAATCTGAAGACGAAGCTGCAGGACGAAACTGGC
ATGCCACCGGCCAAGCAGAAGATATTTTATGAGGGAATGTTCTTCAAAGA
CAGCAATACCATGGCTTTTTACAATCTGGTAAACGGAACCACGGTGCATT
TACAGGTCAAGGAGCGTGGTGGACGCAAAAAGTAGGCGGATCAAAGATTA
AAGGCATACCAGACACAATAAGGAGTGGGCCATATATAAAAATTTATTTG
TATATGGTTTCGCATAAATTTGTAATAAATCGTCAATCACAAAAAAAAAA
AAAAAAAA

GH03554.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG16941-RA 2707 CG16941-RA 161..2701 1..2541 12705 100 Plus
CG3534-RA 2072 CG3534-RA 1984..2072 2541..2453 445 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 12824597..12826059 1989..527 7315 100 Minus
chr3R 27901430 chr3R 12823872..12824080 2540..2332 1045 100 Minus
chr3R 27901430 chr3R 12826637..12826825 189..1 945 100 Minus
chr3R 27901430 chr3R 12824135..12824308 2334..2161 870 100 Minus
chr3R 27901430 chr3R 12826120..12826293 527..354 870 100 Minus
chr3R 27901430 chr3R 12824368..12824540 2162..1990 865 100 Minus
chr3R 27901430 chr3R 12826350..12826514 354..190 825 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:29:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17000111..17001573 1989..527 7315 100 Minus
3R 32079331 3R 16999385..16999594 2541..2332 1050 100 Minus
3R 32079331 3R 17002151..17002339 189..1 945 100 Minus
3R 32079331 3R 16999649..16999822 2334..2161 870 100 Minus
3R 32079331 3R 17001634..17001807 527..354 870 100 Minus
3R 32079331 3R 16999882..17000054 2162..1990 865 100 Minus
3R 32079331 3R 17001864..17002028 354..190 825 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 16740942..16742404 1989..527 7315 100 Minus
3R 31820162 3R 16740216..16740425 2541..2332 1050 100 Minus
3R 31820162 3R 16742982..16743170 189..1 945 100 Minus
3R 31820162 3R 16742465..16742638 527..354 870 100 Minus
3R 31820162 3R 16740480..16740653 2334..2161 870 100 Minus
3R 31820162 3R 16740713..16740885 2162..1990 865 100 Minus
3R 31820162 3R 16742695..16742859 354..190 825 100 Minus
Blast to na_te.dros performed 2019-03-15 17:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\BuT2 2775 Dbuz\BuT2 BUT2 2775bp 111..169 2483..2540 121 71.7 Plus

GH03554.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:24:17 Download gff for GH03554.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 12824368..12824540 1990..2162 100 <- Minus
chr3R 12823872..12824078 2334..2540 100 <- Minus
chr3R 12824136..12824306 2163..2333 100 <- Minus
chr3R 12824597..12826059 527..1989 100 <- Minus
chr3R 12826121..12826292 355..526 100 <- Minus
chr3R 12826350..12826514 190..354 100 <- Minus
chr3R 12826637..12826825 1..189 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:10:53 Download gff for GH03554.complete
Subject Subject Range Query Range Percent Splice Strand
CG16941-RA 1..2355 81..2435 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:41:30 Download gff for GH03554.complete
Subject Subject Range Query Range Percent Splice Strand
CG16941-RA 1..2355 81..2435 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:33:56 Download gff for GH03554.complete
Subject Subject Range Query Range Percent Splice Strand
CG16941-RA 1..2355 81..2435 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:19:49 Download gff for GH03554.complete
Subject Subject Range Query Range Percent Splice Strand
CG16941-RA 1..2355 81..2435 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:35:33 Download gff for GH03554.complete
Subject Subject Range Query Range Percent Splice Strand
CG16941-RA 1..2355 81..2435 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:47:27 Download gff for GH03554.complete
Subject Subject Range Query Range Percent Splice Strand
CG16941-RA 17..2556 1..2540 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:41:29 Download gff for GH03554.complete
Subject Subject Range Query Range Percent Splice Strand
CG16941-RA 17..2556 1..2540 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:33:56 Download gff for GH03554.complete
Subject Subject Range Query Range Percent Splice Strand
CG16941-RA 17..2556 1..2540 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:19:50 Download gff for GH03554.complete
Subject Subject Range Query Range Percent Splice Strand
CG16941-RA 17..2556 1..2540 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:35:33 Download gff for GH03554.complete
Subject Subject Range Query Range Percent Splice Strand
CG16941-RA 17..2556 1..2540 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:24:17 Download gff for GH03554.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17002151..17002339 1..189 100   Minus
3R 17001864..17002028 190..354 100 <- Minus
3R 16999386..16999592 2334..2540 100 <- Minus
3R 16999650..16999820 2163..2333 100 <- Minus
3R 16999882..17000054 1990..2162 100 <- Minus
3R 17000111..17001573 527..1989 100 <- Minus
3R 17001635..17001806 355..526 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:24:17 Download gff for GH03554.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17002151..17002339 1..189 100   Minus
3R 17001864..17002028 190..354 100 <- Minus
3R 16999386..16999592 2334..2540 100 <- Minus
3R 16999650..16999820 2163..2333 100 <- Minus
3R 16999882..17000054 1990..2162 100 <- Minus
3R 17000111..17001573 527..1989 100 <- Minus
3R 17001635..17001806 355..526 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:24:17 Download gff for GH03554.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17002151..17002339 1..189 100   Minus
3R 17001864..17002028 190..354 100 <- Minus
3R 16999386..16999592 2334..2540 100 <- Minus
3R 16999650..16999820 2163..2333 100 <- Minus
3R 16999882..17000054 1990..2162 100 <- Minus
3R 17000111..17001573 527..1989 100 <- Minus
3R 17001635..17001806 355..526 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:33:56 Download gff for GH03554.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12827357..12827528 355..526 100 <- Minus
arm_3R 12827586..12827750 190..354 100 <- Minus
arm_3R 12827873..12828061 1..189 100   Minus
arm_3R 12825108..12825314 2334..2540 100 <- Minus
arm_3R 12825372..12825542 2163..2333 100 <- Minus
arm_3R 12825604..12825776 1990..2162 100 <- Minus
arm_3R 12825833..12827295 527..1989 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:54:48 Download gff for GH03554.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16742466..16742637 355..526 100 <- Minus
3R 16742695..16742859 190..354 100 <- Minus
3R 16742982..16743170 1..189 100   Minus
3R 16740217..16740423 2334..2540 100 <- Minus
3R 16740481..16740651 2163..2333 100 <- Minus
3R 16740713..16740885 1990..2162 100 <- Minus
3R 16740942..16742404 527..1989 100 <- Minus

GH03554.pep Sequence

Translation from 80 to 2434

> GH03554.pep
MATLDAEANEEQFGNDQPKSMSGPIIGIIYPPPEVRNIVDKTASFVARNG
PEFEARIRQNELGNPKFNFLNGGDPYHAYYRHKVNEFREGNDAGITALAS
MKQLAVTSAAQQRQQELLKQVVEQQFVPKEPPPEFEFIADPPSISALDLD
IVKLTAQFVARNGRQFLTNLMSREQRNFQFDFLRPQHSLFQYFTKLLEQY
TKVLIPPKDLLGKLRSESAPGRSSMNQVLEQVKYRANWQRHQEAQRRREE
EKIERERVAYAQIDWHDFVVVETVDYQPFESGNFPPPTNPDEVGARVLME
ERLMDEEGDTEMQIESDDEGDSQANNLLDSGLKLSQMENRVGIQMKNVSS
YGQPTGPKRDNTQVQDMDEASSDEDTPTTKLQPSVAPMLPPTHDKVVVKK
YDPKATQPKQAPMPTDEYLISPITGEKIPASKVSEHMRIGLLDPRWVEQR
DKHTVEKINQDNVFAAGTAIEASLKQLAERRTDIFGVGDEETVIGKKLGE
EETKKDDRVTWDGHTSSVEAATRAARANITLEEQIHQIHKVKGLLPDEEK
EKIGPKPVGNKATLSAPPQPSTKSQHSHSSQSQHHQGGGGGHHGHHNPHH
HHPPHQQAPPHQSHHHHPPQQPQPVMQLMQLRPTMMQPPFGAGGGGYMNM
QPGGIPQQIAPAPPVDIMEEEPPSKKIRSEDNLIPEADFIATHKSPVTIQ
VLVPNSDKSEWKLNGQMIAVTMALSEPIANLKTKLQDETGMPPAKQKIFY
EGMFFKDSNTMAFYNLVNGTTVHLQVKERGGRKK*

GH03554.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17916-PA 792 GF17916-PA 1..792 1..784 3318 88.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16800-PA 792 GG16800-PA 1..792 1..784 4056 96 Plus
Dere\GG15832-PA 953 GG15832-PA 11..59 35..84 156 58 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18068-PA 799 GH18068-PA 1..580 1..578 2637 90 Plus
Dgri\GH15948-PA 1039 GH15948-PA 11..59 35..84 156 58 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
Sf3a1-PA 784 CG16941-PA 1..784 1..784 4136 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23747-PA 788 GI23747-PA 1..788 1..784 3123 84.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22994-PA 492 GL22994-PA 1..492 299..784 2029 82.8 Plus
Dper\GL22993-PA 289 GL22993-PA 1..284 1..286 1285 94.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14228-PA 788 GA14228-PA 1..788 1..784 3339 87.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15394-PA 784 GM15394-PA 1..784 1..784 4158 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15098-PA 363 GD15098-PA 4..363 2..366 1568 90.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10593-PA 780 GJ10593-PA 1..780 1..784 3149 83.2 Plus
Dvir\GJ12853-PA 992 GJ12853-PA 11..59 35..84 157 58 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12756-PA 793 GK12756-PA 5..565 4..566 2521 92.3 Plus
Dwil\GK20430-PA 1022 GK20430-PA 11..81 35..133 158 39.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26116-PA 784 GE26116-PA 1..784 1..784 4115 97.7 Plus

GH03554.hyp Sequence

Translation from 80 to 2434

> GH03554.hyp
MATLDAEANEEQFGNDQPKSMSGPIIGIIYPPPEVRNIVDKTASFVARNG
PEFEARIRQNELGNPKFNFLNGGDPYHAYYRHKVNEFREGNDAGITALAS
MKQLAVTSAAQQRQQELLKQVVEQQFVPKEPPPEFEFIADPPSISALDLD
IVKLTAQFVARNGRQFLTNLMSREQRNFQFDFLRPQHSLFQYFTKLLEQY
TKVLIPPKDLLGKLRSESAPGRSSMNQVLEQVKYRANWQRHQEAQRRREE
EKIERERVAYAQIDWHDFVVVETVDYQPFESGNFPPPTNPDEVGARVLME
ERLMDEEGDTEMQIESDDEGDSQANNLLDSGLKLSQMENRVGIQMKNVSS
YGQPTGPKRDNTQVQDMDEASSDEDTPTTKLQPSVAPMLPPTHDKVVVKK
YDPKATQPKQAPMPTDEYLISPITGEKIPASKVSEHMRIGLLDPRWVEQR
DKHTVEKINQDNVFAAGTAIEASLKQLAERRTDIFGVGDEETVIGKKLGE
EETKKDDRVTWDGHTSSVEAATRAARANITLEEQIHQIHKVKGLLPDEEK
EKIGPKPVGNKATLSAPPQPSTKSQHSHSSQSQHHQGGGGGHHGHHNPHH
HHPPHQQAPPHQSHHHHPPQQPQPVMQLMQLRPTMMQPPFGAGGGGYMNM
QPGGIPQQIAPAPPVDIMEEEPPSKKIRSEDNLIPEADFIATHKSPVTIQ
VLVPNSDKSEWKLNGQMIAVTMALSEPIANLKTKLQDETGMPPAKQKIFY
EGMFFKDSNTMAFYNLVNGTTVHLQVKERGGRKK*

GH03554.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG16941-PA 784 CG16941-PA 1..784 1..784 4136 100 Plus