BDGP Sequence Production Resources |
Search the DGRC for GH03577
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 35 |
Well: | 77 |
Vector: | pOT2 |
Associated Gene/Transcript | nopo-RA |
Protein status: | GH03577.pep: gold |
Preliminary Size: | 1728 |
Sequenced Size: | 1539 |
Gene | Date | Evidence |
---|---|---|
CG5140 | 2001-01-01 | Release 2 assignment |
CG5140 | 2001-10-10 | Blastp of sequenced clone |
CG5140 | 2003-01-01 | Sim4 clustering to Release 3 |
nopo | 2008-04-29 | Release 5.5 accounting |
nopo | 2008-08-15 | Release 5.9 accounting |
nopo | 2008-12-18 | 5.12 accounting |
1539 bp (1539 high quality bases) assembled on 2001-10-10
GenBank Submission: AY060610
> GH03577.complete CAAACTGTTCGGCGTGCGTTTATTTGTTGTTCTTTTGTAATAACTATTTT TATGTAGTTATTTGTGCCAAAAATGTTGAACTTAAACTGCGTGATATGCG CCGAATTGTTTGGCCAGGCCGACGAGGTTTTTGCCACAGTTTGTGGTCAT ATGTTCCACCACAACTGTCTAAATCAATGGCTCGATCGATCAAAGACCTG TCCTCAGTGCCGGAATAAGTGCACTACCCGCAACATATTTAGGGTCTATT TCAATCTGGCCAACTTGGATGTGAGCCACATCGATGTTGGTTCACTGCAG GAGCAGCTGGACAATGCGATGTTGTCCATGAAAATGGTCGAAAAAGAGCG CAACAAGGATGAACAGCAGATTCGGGATCTGAAGGAAACACAAAAGAAGT GCCTCAAAACCATAGCCGGTTTGGAGCAGAAGGTGCAAAAGAAGGATTTT CTCATCAGCAGCTATGTCGAGCAAATTGGCGTCCTCAAGAGTGATGCCCA TGTCGTTGATGGGTTGCGCAAGGAAAACAAAACATTGAAATCACAGATCC AGAGTATGGAAGGCATATCGGCTATTCTGGCGGCTGGCTCGGCGGATGCC GACCGCTTGCTCAAGAACGAGGCTGATCCACATGTCCTAGCCAACTGGGT GTCCACTCTCAAGAGGGAGTTGCGACAATGCGAGAGCAAAAAGACGGAGC TCAGGAATGTAGTGAAGGTGGTGCAGAATGATCTGCGAAAGGAGATCGAA CTAAAGCGCAAGCTGGAAGAGCGTGTTTCACACCTGGAGAGCGACCTTTA CCAGGCGCAGGAGAAGCTACAAGCTTTTGAGAACAAGACCGCTTACTTGG ACTCACCAAATGCCTCTTGTGGTCTGAACAGCAACATTTTGGCCCTTAAA AGGGAGGAAAGGCGTACCACTATTTCCCCTACAGTTAAGGAGAATATTAA GCGCATCGAAGAATCCACCTCCCCATATCTCAACATTAAATCCAGCAGCG TCGGGTTGGCGCATCTTCTTAATACTAAGGGTAACATTGGGCTGGCCAAG TCTAAAATATCGCCCATCAAGGGAGTCGGTGGCGGTGTGTCTATGACCAG CGGAACCATACGGAAAACCAGCAGTGATCTCAGTGAAAAGTATTCAATCT TCAAGAAGCCAAGACTGCTGCTGGGAAGTTCAAGTAGTTCTGCGTTGACG GCCACGACGGGCTCAAATTTTGTCTACAATGGAATGGGCGGTTCTGAGAA GGTTGACCCCTTTGCGCAGCGCGCCGAGGAAGAGGGTCTTTCCACAATCA GATCCTCGACCGCCCTTTCCCGGAATGTCAACCAGCGTCTTAAAGCCGGC TCGCTGCGCAACTTTAACCTGGGCAAATAAGTCCACAGCCATGTGATCAT AAGAGACTGCCCCAGTTGGGTATTAGCACGCGATTGGTATTGAGGATTGC CGATTTTGTTAGTTAGCCAATGCATGAATTAAGCAATAGTAATAATTTAG CAGTAAATATATAAAAATACAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 14069273..14069654 | 1139..1520 | 1910 | 100 | Plus |
chr2R | 21145070 | chr2R | 14068306..14068659 | 405..758 | 1770 | 100 | Plus |
chr2R | 21145070 | chr2R | 14068031..14068247 | 188..404 | 1070 | 99.5 | Plus |
chr2R | 21145070 | chr2R | 14069009..14069212 | 937..1140 | 1020 | 100 | Plus |
chr2R | 21145070 | chr2R | 14067785..14067972 | 1..188 | 940 | 100 | Plus |
chr2R | 21145070 | chr2R | 14068831..14068952 | 815..936 | 610 | 100 | Plus |
chr2R | 21145070 | chr2R | 14068719..14068777 | 758..816 | 295 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 18182138..18182523 | 1139..1524 | 1930 | 100 | Plus |
2R | 25286936 | 2R | 18181171..18181524 | 405..758 | 1770 | 100 | Plus |
2R | 25286936 | 2R | 18180896..18181112 | 188..404 | 1085 | 100 | Plus |
2R | 25286936 | 2R | 18181874..18182077 | 937..1140 | 1020 | 100 | Plus |
2R | 25286936 | 2R | 18180650..18180837 | 1..188 | 940 | 100 | Plus |
2R | 25286936 | 2R | 18181696..18181817 | 815..936 | 610 | 100 | Plus |
2R | 25286936 | 2R | 18181584..18181642 | 758..816 | 295 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 18183337..18183722 | 1139..1524 | 1930 | 100 | Plus |
2R | 25260384 | 2R | 18182370..18182723 | 405..758 | 1770 | 100 | Plus |
2R | 25260384 | 2R | 18182095..18182311 | 188..404 | 1085 | 100 | Plus |
2R | 25260384 | 2R | 18183073..18183276 | 937..1140 | 1020 | 100 | Plus |
2R | 25260384 | 2R | 18181849..18182036 | 1..188 | 940 | 100 | Plus |
2R | 25260384 | 2R | 18182895..18183016 | 815..936 | 610 | 100 | Plus |
2R | 25260384 | 2R | 18182783..18182841 | 758..816 | 295 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 1985..2079 | 113..16 | 131 | 62.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 14067785..14067972 | 1..188 | 100 | -> | Plus |
chr2R | 14068032..14068247 | 189..404 | 99 | -> | Plus |
chr2R | 14068306..14068659 | 405..758 | 100 | -> | Plus |
chr2R | 14068720..14068777 | 759..816 | 100 | -> | Plus |
chr2R | 14068833..14068952 | 817..936 | 100 | -> | Plus |
chr2R | 14069009..14069212 | 937..1140 | 100 | -> | Plus |
chr2R | 14069275..14069654 | 1141..1520 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nopo-RA | 1..1308 | 73..1380 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nopo-RA | 1..1308 | 73..1380 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nopo-RA | 1..1308 | 73..1380 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nopo-RA | 1..1308 | 73..1380 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nopo-RA | 1..1308 | 73..1380 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nopo-RA | 155..1674 | 1..1520 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nopo-RA | 155..1674 | 1..1520 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nopo-RA | 34..1553 | 1..1520 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nopo-RA | 155..1674 | 1..1520 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nopo-RA | 34..1553 | 1..1520 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18180650..18180837 | 1..188 | 100 | -> | Plus |
2R | 18180897..18181112 | 189..404 | 100 | -> | Plus |
2R | 18181171..18181524 | 405..758 | 100 | -> | Plus |
2R | 18181585..18181642 | 759..816 | 100 | -> | Plus |
2R | 18181698..18181817 | 817..936 | 100 | -> | Plus |
2R | 18181874..18182077 | 937..1140 | 100 | -> | Plus |
2R | 18182140..18182519 | 1141..1520 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18180650..18180837 | 1..188 | 100 | -> | Plus |
2R | 18180897..18181112 | 189..404 | 100 | -> | Plus |
2R | 18181171..18181524 | 405..758 | 100 | -> | Plus |
2R | 18181585..18181642 | 759..816 | 100 | -> | Plus |
2R | 18181698..18181817 | 817..936 | 100 | -> | Plus |
2R | 18181874..18182077 | 937..1140 | 100 | -> | Plus |
2R | 18182140..18182519 | 1141..1520 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18180650..18180837 | 1..188 | 100 | -> | Plus |
2R | 18180897..18181112 | 189..404 | 100 | -> | Plus |
2R | 18181171..18181524 | 405..758 | 100 | -> | Plus |
2R | 18181585..18181642 | 759..816 | 100 | -> | Plus |
2R | 18181698..18181817 | 817..936 | 100 | -> | Plus |
2R | 18181874..18182077 | 937..1140 | 100 | -> | Plus |
2R | 18182140..18182519 | 1141..1520 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 14068155..14068342 | 1..188 | 100 | -> | Plus |
arm_2R | 14068402..14068617 | 189..404 | 100 | -> | Plus |
arm_2R | 14068676..14069029 | 405..758 | 100 | -> | Plus |
arm_2R | 14069090..14069147 | 759..816 | 100 | -> | Plus |
arm_2R | 14069203..14069322 | 817..936 | 100 | -> | Plus |
arm_2R | 14069379..14069582 | 937..1140 | 100 | -> | Plus |
arm_2R | 14069645..14070024 | 1141..1520 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18182096..18182311 | 189..404 | 100 | -> | Plus |
2R | 18182370..18182723 | 405..758 | 100 | -> | Plus |
2R | 18182784..18182841 | 759..816 | 100 | -> | Plus |
2R | 18182897..18183016 | 817..936 | 100 | -> | Plus |
2R | 18183073..18183276 | 937..1140 | 100 | -> | Plus |
2R | 18183339..18183718 | 1141..1520 | 100 | Plus | |
2R | 18181849..18182036 | 1..188 | 100 | -> | Plus |
Translation from 72 to 1379
> GH03577.hyp MLNLNCVICAELFGQADEVFATVCGHMFHHNCLNQWLDRSKTCPQCRNKC TTRNIFRVYFNLANLDVSHIDVGSLQEQLDNAMLSMKMVEKERNKDEQQI RDLKETQKKCLKTIAGLEQKVQKKDFLISSYVEQIGVLKSDAHVVDGLRK ENKTLKSQIQSMEGISAILAAGSADADRLLKNEADPHVLANWVSTLKREL RQCESKKTELRNVVKVVQNDLRKEIELKRKLEERVSHLESDLYQAQEKLQ AFENKTAYLDSPNASCGLNSNILALKREERRTTISPTVKENIKRIEESTS PYLNIKSSSVGLAHLLNTKGNIGLAKSKISPIKGVGGGVSMTSGTIRKTS SDLSEKYSIFKKPRLLLGSSSSSALTATTGSNFVYNGMGGSEKVDPFAQR AEEEGLSTIRSSTALSRNVNQRLKAGSLRNFNLGK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nopo-PA | 435 | CG5140-PA | 1..435 | 1..435 | 2196 | 100 | Plus |
nopo-PB | 434 | CG5140-PB | 1..434 | 1..435 | 2179 | 99.8 | Plus |
CG10916-PB | 263 | CG10916-PB | 28..90 | 2..63 | 195 | 52.4 | Plus |
CG10916-PA | 263 | CG10916-PA | 28..90 | 2..63 | 195 | 52.4 | Plus |
Translation from 72 to 1379
> GH03577.pep MLNLNCVICAELFGQADEVFATVCGHMFHHNCLNQWLDRSKTCPQCRNKC TTRNIFRVYFNLANLDVSHIDVGSLQEQLDNAMLSMKMVEKERNKDEQQI RDLKETQKKCLKTIAGLEQKVQKKDFLISSYVEQIGVLKSDAHVVDGLRK ENKTLKSQIQSMEGISAILAAGSADADRLLKNEADPHVLANWVSTLKREL RQCESKKTELRNVVKVVQNDLRKEIELKRKLEERVSHLESDLYQAQEKLQ AFENKTAYLDSPNASCGLNSNILALKREERRTTISPTVKENIKRIEESTS PYLNIKSSSVGLAHLLNTKGNIGLAKSKISPIKGVGGGVSMTSGTIRKTS SDLSEKYSIFKKPRLLLGSSSSSALTATTGSNFVYNGMGGSEKVDPFAQR AEEEGLSTIRSSTALSRNVNQRLKAGSLRNFNLGK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12143-PA | 424 | GF12143-PA | 1..424 | 1..435 | 1762 | 77.7 | Plus |
Dana\GF12140-PA | 263 | GF12140-PA | 27..163 | 2..139 | 192 | 30.3 | Plus |
Dana\GF12141-PA | 258 | GF12141-PA | 23..85 | 2..63 | 165 | 44.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21854-PA | 435 | GG21854-PA | 1..435 | 1..435 | 2113 | 92.9 | Plus |
Dere\GG21853-PA | 263 | GG21853-PA | 28..89 | 2..62 | 195 | 50 | Plus |
Dere\GG20622-PA | 269 | GG20622-PA | 24..87 | 2..65 | 163 | 47.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22143-PA | 433 | GH22143-PA | 1..433 | 1..435 | 1579 | 69.6 | Plus |
Dgri\GH22142-PA | 266 | GH22142-PA | 1..255 | 27..316 | 506 | 43.4 | Plus |
Dgri\GH20284-PA | 246 | GH20284-PA | 16..78 | 2..63 | 179 | 47.6 | Plus |
Dgri\GH24407-PA | 147 | GH24407-PA | 19..98 | 3..84 | 149 | 30.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nopo-PA | 435 | CG5140-PA | 1..435 | 1..435 | 2196 | 100 | Plus |
nopo-PB | 434 | CG5140-PB | 1..434 | 1..435 | 2179 | 99.8 | Plus |
CG10916-PB | 263 | CG10916-PB | 28..90 | 2..63 | 195 | 52.4 | Plus |
CG10916-PA | 263 | CG10916-PA | 28..90 | 2..63 | 195 | 52.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19373-PA | 429 | GI19373-PA | 1..429 | 1..435 | 1470 | 64.5 | Plus |
Dmoj\GI19455-PA | 246 | GI19455-PA | 16..141 | 2..134 | 192 | 32.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17755-PA | 432 | GL17755-PA | 1..432 | 1..435 | 1774 | 76.8 | Plus |
Dper\GL17754-PA | 253 | GL17754-PA | 14..76 | 2..63 | 189 | 50.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18686-PA | 431 | GA18686-PA | 1..431 | 1..435 | 1780 | 76.6 | Plus |
Dpse\GA10640-PA | 253 | GA10640-PA | 14..76 | 2..63 | 189 | 50.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21854-PA | 432 | GM21854-PA | 1..432 | 1..435 | 2154 | 93.6 | Plus |
Dsec\GM21853-PA | 266 | GM21853-PA | 28..159 | 2..135 | 191 | 32.1 | Plus |
Dsec\GM18926-PA | 151 | GM18926-PA | 5..65 | 3..65 | 145 | 39.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11347-PA | 435 | GD11347-PA | 1..435 | 1..435 | 2132 | 95.4 | Plus |
Dsim\GD11346-PA | 263 | GD11346-PA | 28..159 | 2..135 | 194 | 32.9 | Plus |
Dsim\GD24619-PA | 151 | GD24619-PA | 5..65 | 3..65 | 145 | 39.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19929-PA | 434 | GJ19929-PA | 1..434 | 1..435 | 1654 | 71.9 | Plus |
Dvir\GJ21206-PA | 249 | GJ21206-PA | 19..81 | 2..63 | 176 | 46 | Plus |
Dvir\GJ16388-PA | 146 | GJ16388-PA | 24..86 | 3..67 | 158 | 35.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22967-PA | 429 | GK22967-PA | 1..429 | 1..435 | 1594 | 69.7 | Plus |
Dwil\GK22966-PA | 266 | GK22966-PA | 32..93 | 2..63 | 197 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11933-PA | 435 | GE11933-PA | 1..435 | 1..435 | 2144 | 94.5 | Plus |
Dyak\GE11932-PA | 263 | GE11932-PA | 28..125 | 2..92 | 204 | 38.8 | Plus |
Dyak\GE11812-PA | 269 | GE11812-PA | 24..88 | 2..65 | 170 | 43.1 | Plus |
Dyak\GE16987-PA | 168 | GE16987-PA | 5..62 | 3..62 | 145 | 40 | Plus |