Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
GH03607.complete Sequence
2161 bp (2161 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058285
> GH03607.complete
CTGTTTCACCCCGAAATTTTGTAGCTCGTTGTTATTGTTAATTTTATGGA
CTCCGCACACCGTACTTAATGAACGCCACACTCAATTCCGCGGGCGGCAA
GCGTCAGCTGCGCTTTCGCGGCGACGTCACCGGCAGCCGAGTGGAGGAAC
TGCATCATCAGCAGCAGGAGGAGCAGAAGCAAAAGGCGCCGCTCGCCCAG
GATGACGTTGCAGCGACGCCGACTGCGACGCCGGCAGCGGGCTCAGCGCA
GCAGCGACTGCAGAGCGGAACCGCCGAAACCTGCACAAACACATTCTACG
ACTTCTTCAAAGTGGAGATGACACGCGGCTATATGCTGGAGCACGACGAG
GAGCGCTATTCGGCGCGTAGGCAGAAGATCTACAGCTTCATGCGCATACC
GCGGGATCTGGAGCGATTCATGGTGTACGGGATCATGCAGTGCGCCGACT
CATTTCTCTACATTCACACTTTTCTGCCCGTCCGATTTGTGATGGCCGTT
TGGGCCCTAGTTTCCAGGACGGTGGCAAGAATCTTTCGACTACGCAGCAG
CGGACAAAGGCTGCTATCGCCGGCGGAGATCTGTGATCTGCTGAAGGGCG
TCATCTGGATGACGGTGACGCTGATAATGCTCCTGGTGGACACGAATCGG
GTGTACCACATCATCAAGTCACAGTCGATCATCAAGCTGTACATATTCTA
CAACATGCTGGAGGTGGGCGACCGGCTGTTGTCCGCTTTTGGTCAGGACA
CGATCGATGCTCTCTTCTGGACGGCGACAGAACCAAAGAATTCCAAGCGA
GAGCACTTTGGAGTGCTTACGCACGTTCTCTTCACGCTAATCTATGTCTT
CTTGCACAGCGGACTGATCATGTTTCAGGCCACCTGTTTGAATGTGGCGG
TGAACTCCAACAACAAGGGCCTGCTGACCATCATGATATCGAATAATTTC
GTGGAGCTCAAGGGATCCGTGTTCAAGAAGTTCGACAAAAACAACCTGTT
CCAATTGACCTGCAGCGATGTACGAGAGCGATTCCATCTGTCTGTGCTTC
TGTTCATTGTGGTCATCCAGACCATGAAGGAGTTTGACTGGAGCATCACC
CAGTTCTGTGTAATGCTGCCCGACTGCTTTGCCGTGCTGTTCACGGAAAT
TCTGATCGATTGGGTGAAGCATGCGTTTATCACGCGATTCAATGAGCTGC
CGGAGAGCATCTACAGGGAGTACACGACCAGCTTGGCCTACGATATGACC
CAGACGCGGCAAAAGCACGCATTCTCAGATCATTCGGATTTGGTGGCCAG
ACGCATGGGCTTCATTCCATTTCCGCTGGCTGTGGTCCTGATAAAGGCCA
TCTATACAGCGGTCTCTTTCGAGAATCTAGCCGCCTGGCTGCTCTTCCTG
CTGGCCTACTTGTTTGCCATGGGCTTGCGCATTTGCCTGACCATCTGTGC
GCTGGGCAAGGCCTGCAAGCTAATGAAGGAACATCAGACCGAGCGCAACA
GTTCTACACCGAGTAGCATGACCAATGTGCCGGTCATAGGCGCAGCTGCT
CCTGTCTCAGCGGCTGCGACGGGCGGACAGAATCACAATAATAATAATAA
CAACAATAACAACAGCATTAGCATTGGCTCGAAGCCAGCCCAAGTGACCA
CACTGTTGACCCCGCCCAGTGCTGGCCATCTCGATGTGAGTAAGAATTTC
TCGCGCACCTCAATCGCATCCACATCCACGCCAAAGAAGGCGGTCAGTGA
GCAGGAGCTGGACGTGACCAACTCCCTGGAACTGGGCGCCACAGCTCTCT
TCTCCAACAGCGATGTGGATTTGGACGATGTTTGCCTCAACGAGCAGGTG
ACCAACACCAATACCAGTTCAGCCGTCCAGGAGGTTTACCAGGAGCAGGA
CCTGGTGCGCAGCCAACCGGATTTGATGCTGCTCAACAATTCCGGCGACG
GAGTGACAAGTGCCAAGGCTAAGAAGGCCACCCAGCGATTGCCCAAGCGA
ACGCACAAGCGTTCCGAATCGGAGCCGGGCATGCCCAGCATGGTGGAGAA
GGGCGGAGCTGCTGGTATTGCGGGAGGCAACCAAACGACACAGCTGTAGC
CATAAATCGATGCTAATTTATTATTATATTTGATTTTATCCTAAAAAAAA
AAAAAAAAAAA
GH03607.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:39:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7218-RA | 2690 | CG7218-RA | 130..2272 | 1..2143 | 10715 | 100 | Plus |
CG7218.a | 2613 | CG7218.a | 65..2207 | 1..2143 | 10715 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:27:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 13986132..13987400 | 2142..874 | 6345 | 100 | Minus |
chr3R | 27901430 | chr3R | 13987469..13988081 | 879..267 | 3065 | 100 | Minus |
chr3R | 27901430 | chr3R | 13988469..13988736 | 268..1 | 1340 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:29:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:27:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18161765..18163034 | 2143..874 | 6350 | 100 | Minus |
3R | 32079331 | 3R | 18163103..18163715 | 879..267 | 3065 | 100 | Minus |
3R | 32079331 | 3R | 18164103..18164370 | 268..1 | 1340 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:01:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 17902596..17903865 | 2143..874 | 6350 | 100 | Minus |
3R | 31820162 | 3R | 17903934..17904546 | 879..267 | 3065 | 100 | Minus |
3R | 31820162 | 3R | 17904934..17905201 | 268..1 | 1340 | 100 | Minus |
Blast to na_te.dros performed 2019-03-16 09:27:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 12..58 | 1574..1620 | 127 | 74.5 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7050..7096 | 1574..1620 | 127 | 74.5 | Plus |
hopper | 1435 | hopper DMTRDNA 1435bp Derived from X80025 (g510507) (Rel. 44, Last updated, Version 11). | 1101..1156 | 1572..1626 | 124 | 71.4 | Plus |
rover | 7318 | rover ROVER 7318bp | 2714..2775 | 1244..1305 | 121 | 66.1 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 29..62 | 1579..1612 | 116 | 82.4 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7067..7100 | 1579..1612 | 116 | 82.4 | Plus |
Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2877..2906 | 1581..1610 | 114 | 86.7 | Plus |
Stalker | 7256 | Stalker STALKER 7256bp | 2771..2800 | 1581..1610 | 114 | 86.7 | Plus |
GH03607.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:28:45 Download gff for
GH03607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 13986132..13987395 | 879..2142 | 97 | <- | Minus |
chr3R | 13987470..13988080 | 268..878 | 100 | <- | Minus |
chr3R | 13988470..13988736 | 1..267 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:11:07 Download gff for
GH03607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7218-RA | 1..2031 | 69..2099 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:32:02 Download gff for
GH03607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7218-RA | 1..2031 | 69..2099 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:49:52 Download gff for
GH03607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7218-RA | 1..2031 | 69..2099 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:05:49 Download gff for
GH03607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7218-RA | 1..2031 | 69..2099 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:58 Download gff for
GH03607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7218-RA | 1..2031 | 69..2099 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:33:35 Download gff for
GH03607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7218-RA | 24..2165 | 1..2142 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:32:02 Download gff for
GH03607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7218-RA | 21..2162 | 1..2142 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:49:52 Download gff for
GH03607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7218-RA | 21..2162 | 1..2142 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:05:49 Download gff for
GH03607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7218-RA | 24..2165 | 1..2142 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:58 Download gff for
GH03607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7218-RA | 28..2169 | 1..2142 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:28:45 Download gff for
GH03607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18161766..18163029 | 879..2142 | 100 | <- | Minus |
3R | 18163104..18163714 | 268..878 | 100 | <- | Minus |
3R | 18164104..18164370 | 1..267 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:28:45 Download gff for
GH03607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18161766..18163029 | 879..2142 | 100 | <- | Minus |
3R | 18163104..18163714 | 268..878 | 100 | <- | Minus |
3R | 18164104..18164370 | 1..267 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:28:45 Download gff for
GH03607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18161766..18163029 | 879..2142 | 100 | <- | Minus |
3R | 18163104..18163714 | 268..878 | 100 | <- | Minus |
3R | 18164104..18164370 | 1..267 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:49:52 Download gff for
GH03607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13987488..13988751 | 879..2142 | 100 | <- | Minus |
arm_3R | 13988826..13989436 | 268..878 | 100 | <- | Minus |
arm_3R | 13989826..13990092 | 1..267 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:43:57 Download gff for
GH03607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17902597..17903860 | 879..2142 | 100 | <- | Minus |
3R | 17903935..17904545 | 268..878 | 100 | <- | Minus |
3R | 17904935..17905201 | 1..267 | 100 | | Minus |
GH03607.pep Sequence
Translation from 68 to 2098
> GH03607.pep
MNATLNSAGGKRQLRFRGDVTGSRVEELHHQQQEEQKQKAPLAQDDVAAT
PTATPAAGSAQQRLQSGTAETCTNTFYDFFKVEMTRGYMLEHDEERYSAR
RQKIYSFMRIPRDLERFMVYGIMQCADSFLYIHTFLPVRFVMAVWALVSR
TVARIFRLRSSGQRLLSPAEICDLLKGVIWMTVTLIMLLVDTNRVYHIIK
SQSIIKLYIFYNMLEVGDRLLSAFGQDTIDALFWTATEPKNSKREHFGVL
THVLFTLIYVFLHSGLIMFQATCLNVAVNSNNKGLLTIMISNNFVELKGS
VFKKFDKNNLFQLTCSDVRERFHLSVLLFIVVIQTMKEFDWSITQFCVML
PDCFAVLFTEILIDWVKHAFITRFNELPESIYREYTTSLAYDMTQTRQKH
AFSDHSDLVARRMGFIPFPLAVVLIKAIYTAVSFENLAAWLLFLLAYLFA
MGLRICLTICALGKACKLMKEHQTERNSSTPSSMTNVPVIGAAAPVSAAA
TGGQNHNNNNNNNNNSISIGSKPAQVTTLLTPPSAGHLDVSKNFSRTSIA
STSTPKKAVSEQELDVTNSLELGATALFSNSDVDLDDVCLNEQVTNTNTS
SAVQEVYQEQDLVRSQPDLMLLNNSGDGVTSAKAKKATQRLPKRTHKRSE
SEPGMPSMVEKGGAAGIAGGNQTTQL*
GH03607.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7218-PB | 676 | CG7218-PB | 1..676 | 1..676 | 3459 | 100 | Plus |
CG7218-PA | 676 | CG7218-PA | 1..676 | 1..676 | 3459 | 100 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:08:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA20187-PA | 688 | GA20187-PA | 1..688 | 1..676 | 2712 | 79.9 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:09:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE14805-PA | 190 | GE14805-PA | 1..190 | 484..676 | 838 | 87.6 | Plus |
GH03607.hyp Sequence
Translation from 68 to 2098
> GH03607.hyp
MNATLNSAGGKRQLRFRGDVTGSRVEELHHQQQEEQKQKAPLAQDDVAAT
PTATPAAGSAQQRLQSGTAETCTNTFYDFFKVEMTRGYMLEHDEERYSAR
RQKIYSFMRIPRDLERFMVYGIMQCADSFLYIHTFLPVRFVMAVWALVSR
TVARIFRLRSSGQRLLSPAEICDLLKGVIWMTVTLIMLLVDTNRVYHIIK
SQSIIKLYIFYNMLEVGDRLLSAFGQDTIDALFWTATEPKNSKREHFGVL
THVLFTLIYVFLHSGLIMFQATCLNVAVNSNNKGLLTIMISNNFVELKGS
VFKKFDKNNLFQLTCSDVRERFHLSVLLFIVVIQTMKEFDWSITQFCVML
PDCFAVLFTEILIDWVKHAFITRFNELPESIYREYTTSLAYDMTQTRQKH
AFSDHSDLVARRMGFIPFPLAVVLIKAIYTAVSFENLAAWLLFLLAYLFA
MGLRICLTICALGKACKLMKEHQTERNSSTPSSMTNVPVIGAAAPVSAAA
TGGQNHNNNNNNNNNSISIGSKPAQVTTLLTPPSAGHLDVSKNFSRTSIA
STSTPKKAVSEQELDVTNSLELGATALFSNSDVDLDDVCLNEQVTNTNTS
SAVQEVYQEQDLVRSQPDLMLLNNSGDGVTSAKAKKATQRLPKRTHKRSE
SEPGMPSMVEKGGAAGIAGGNQTTQL*
GH03607.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:37:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7218-PB | 676 | CG7218-PB | 1..676 | 1..676 | 3459 | 100 | Plus |
CG7218-PA | 676 | CG7218-PA | 1..676 | 1..676 | 3459 | 100 | Plus |