Clone GH03607 Report

Search the DGRC for GH03607

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:36
Well:7
Vector:pOT2
Associated Gene/TranscriptCG7218-RA
Protein status:GH03607.pep: gold
Preliminary Size:2200
Sequenced Size:2161

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7218 2001-01-01 Release 2 assignment
CG7218 2001-09-19 Blastp of sequenced clone
CG7218 2003-01-01 Sim4 clustering to Release 3
CG7218 2008-04-29 Release 5.5 accounting
CG7218 2008-08-15 Release 5.9 accounting
CG7218 2008-12-18 5.12 accounting

Clone Sequence Records

GH03607.complete Sequence

2161 bp (2161 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058285

> GH03607.complete
CTGTTTCACCCCGAAATTTTGTAGCTCGTTGTTATTGTTAATTTTATGGA
CTCCGCACACCGTACTTAATGAACGCCACACTCAATTCCGCGGGCGGCAA
GCGTCAGCTGCGCTTTCGCGGCGACGTCACCGGCAGCCGAGTGGAGGAAC
TGCATCATCAGCAGCAGGAGGAGCAGAAGCAAAAGGCGCCGCTCGCCCAG
GATGACGTTGCAGCGACGCCGACTGCGACGCCGGCAGCGGGCTCAGCGCA
GCAGCGACTGCAGAGCGGAACCGCCGAAACCTGCACAAACACATTCTACG
ACTTCTTCAAAGTGGAGATGACACGCGGCTATATGCTGGAGCACGACGAG
GAGCGCTATTCGGCGCGTAGGCAGAAGATCTACAGCTTCATGCGCATACC
GCGGGATCTGGAGCGATTCATGGTGTACGGGATCATGCAGTGCGCCGACT
CATTTCTCTACATTCACACTTTTCTGCCCGTCCGATTTGTGATGGCCGTT
TGGGCCCTAGTTTCCAGGACGGTGGCAAGAATCTTTCGACTACGCAGCAG
CGGACAAAGGCTGCTATCGCCGGCGGAGATCTGTGATCTGCTGAAGGGCG
TCATCTGGATGACGGTGACGCTGATAATGCTCCTGGTGGACACGAATCGG
GTGTACCACATCATCAAGTCACAGTCGATCATCAAGCTGTACATATTCTA
CAACATGCTGGAGGTGGGCGACCGGCTGTTGTCCGCTTTTGGTCAGGACA
CGATCGATGCTCTCTTCTGGACGGCGACAGAACCAAAGAATTCCAAGCGA
GAGCACTTTGGAGTGCTTACGCACGTTCTCTTCACGCTAATCTATGTCTT
CTTGCACAGCGGACTGATCATGTTTCAGGCCACCTGTTTGAATGTGGCGG
TGAACTCCAACAACAAGGGCCTGCTGACCATCATGATATCGAATAATTTC
GTGGAGCTCAAGGGATCCGTGTTCAAGAAGTTCGACAAAAACAACCTGTT
CCAATTGACCTGCAGCGATGTACGAGAGCGATTCCATCTGTCTGTGCTTC
TGTTCATTGTGGTCATCCAGACCATGAAGGAGTTTGACTGGAGCATCACC
CAGTTCTGTGTAATGCTGCCCGACTGCTTTGCCGTGCTGTTCACGGAAAT
TCTGATCGATTGGGTGAAGCATGCGTTTATCACGCGATTCAATGAGCTGC
CGGAGAGCATCTACAGGGAGTACACGACCAGCTTGGCCTACGATATGACC
CAGACGCGGCAAAAGCACGCATTCTCAGATCATTCGGATTTGGTGGCCAG
ACGCATGGGCTTCATTCCATTTCCGCTGGCTGTGGTCCTGATAAAGGCCA
TCTATACAGCGGTCTCTTTCGAGAATCTAGCCGCCTGGCTGCTCTTCCTG
CTGGCCTACTTGTTTGCCATGGGCTTGCGCATTTGCCTGACCATCTGTGC
GCTGGGCAAGGCCTGCAAGCTAATGAAGGAACATCAGACCGAGCGCAACA
GTTCTACACCGAGTAGCATGACCAATGTGCCGGTCATAGGCGCAGCTGCT
CCTGTCTCAGCGGCTGCGACGGGCGGACAGAATCACAATAATAATAATAA
CAACAATAACAACAGCATTAGCATTGGCTCGAAGCCAGCCCAAGTGACCA
CACTGTTGACCCCGCCCAGTGCTGGCCATCTCGATGTGAGTAAGAATTTC
TCGCGCACCTCAATCGCATCCACATCCACGCCAAAGAAGGCGGTCAGTGA
GCAGGAGCTGGACGTGACCAACTCCCTGGAACTGGGCGCCACAGCTCTCT
TCTCCAACAGCGATGTGGATTTGGACGATGTTTGCCTCAACGAGCAGGTG
ACCAACACCAATACCAGTTCAGCCGTCCAGGAGGTTTACCAGGAGCAGGA
CCTGGTGCGCAGCCAACCGGATTTGATGCTGCTCAACAATTCCGGCGACG
GAGTGACAAGTGCCAAGGCTAAGAAGGCCACCCAGCGATTGCCCAAGCGA
ACGCACAAGCGTTCCGAATCGGAGCCGGGCATGCCCAGCATGGTGGAGAA
GGGCGGAGCTGCTGGTATTGCGGGAGGCAACCAAACGACACAGCTGTAGC
CATAAATCGATGCTAATTTATTATTATATTTGATTTTATCCTAAAAAAAA
AAAAAAAAAAA

GH03607.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7218-RA 2690 CG7218-RA 130..2272 1..2143 10715 100 Plus
CG7218.a 2613 CG7218.a 65..2207 1..2143 10715 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 13986132..13987400 2142..874 6345 100 Minus
chr3R 27901430 chr3R 13987469..13988081 879..267 3065 100 Minus
chr3R 27901430 chr3R 13988469..13988736 268..1 1340 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:29:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:27:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18161765..18163034 2143..874 6350 100 Minus
3R 32079331 3R 18163103..18163715 879..267 3065 100 Minus
3R 32079331 3R 18164103..18164370 268..1 1340 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 17902596..17903865 2143..874 6350 100 Minus
3R 31820162 3R 17903934..17904546 879..267 3065 100 Minus
3R 31820162 3R 17904934..17905201 268..1 1340 100 Minus
Blast to na_te.dros performed 2019-03-16 09:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 12..58 1574..1620 127 74.5 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7050..7096 1574..1620 127 74.5 Plus
hopper 1435 hopper DMTRDNA 1435bp Derived from X80025 (g510507) (Rel. 44, Last updated, Version 11). 1101..1156 1572..1626 124 71.4 Plus
rover 7318 rover ROVER 7318bp 2714..2775 1244..1305 121 66.1 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 29..62 1579..1612 116 82.4 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7067..7100 1579..1612 116 82.4 Plus
Stalker4 7359 Stalker4 STALKER4 7359bp 2877..2906 1581..1610 114 86.7 Plus
Stalker 7256 Stalker STALKER 7256bp 2771..2800 1581..1610 114 86.7 Plus

GH03607.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:28:45 Download gff for GH03607.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 13986132..13987395 879..2142 97 <- Minus
chr3R 13987470..13988080 268..878 100 <- Minus
chr3R 13988470..13988736 1..267 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:11:07 Download gff for GH03607.complete
Subject Subject Range Query Range Percent Splice Strand
CG7218-RA 1..2031 69..2099 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:32:02 Download gff for GH03607.complete
Subject Subject Range Query Range Percent Splice Strand
CG7218-RA 1..2031 69..2099 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:49:52 Download gff for GH03607.complete
Subject Subject Range Query Range Percent Splice Strand
CG7218-RA 1..2031 69..2099 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:05:49 Download gff for GH03607.complete
Subject Subject Range Query Range Percent Splice Strand
CG7218-RA 1..2031 69..2099 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:58 Download gff for GH03607.complete
Subject Subject Range Query Range Percent Splice Strand
CG7218-RA 1..2031 69..2099 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:33:35 Download gff for GH03607.complete
Subject Subject Range Query Range Percent Splice Strand
CG7218-RA 24..2165 1..2142 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:32:02 Download gff for GH03607.complete
Subject Subject Range Query Range Percent Splice Strand
CG7218-RA 21..2162 1..2142 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:49:52 Download gff for GH03607.complete
Subject Subject Range Query Range Percent Splice Strand
CG7218-RA 21..2162 1..2142 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:05:49 Download gff for GH03607.complete
Subject Subject Range Query Range Percent Splice Strand
CG7218-RA 24..2165 1..2142 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:58 Download gff for GH03607.complete
Subject Subject Range Query Range Percent Splice Strand
CG7218-RA 28..2169 1..2142 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:28:45 Download gff for GH03607.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18161766..18163029 879..2142 100 <- Minus
3R 18163104..18163714 268..878 100 <- Minus
3R 18164104..18164370 1..267 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:28:45 Download gff for GH03607.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18161766..18163029 879..2142 100 <- Minus
3R 18163104..18163714 268..878 100 <- Minus
3R 18164104..18164370 1..267 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:28:45 Download gff for GH03607.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18161766..18163029 879..2142 100 <- Minus
3R 18163104..18163714 268..878 100 <- Minus
3R 18164104..18164370 1..267 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:49:52 Download gff for GH03607.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13987488..13988751 879..2142 100 <- Minus
arm_3R 13988826..13989436 268..878 100 <- Minus
arm_3R 13989826..13990092 1..267 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:43:57 Download gff for GH03607.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17902597..17903860 879..2142 100 <- Minus
3R 17903935..17904545 268..878 100 <- Minus
3R 17904935..17905201 1..267 100   Minus

GH03607.pep Sequence

Translation from 68 to 2098

> GH03607.pep
MNATLNSAGGKRQLRFRGDVTGSRVEELHHQQQEEQKQKAPLAQDDVAAT
PTATPAAGSAQQRLQSGTAETCTNTFYDFFKVEMTRGYMLEHDEERYSAR
RQKIYSFMRIPRDLERFMVYGIMQCADSFLYIHTFLPVRFVMAVWALVSR
TVARIFRLRSSGQRLLSPAEICDLLKGVIWMTVTLIMLLVDTNRVYHIIK
SQSIIKLYIFYNMLEVGDRLLSAFGQDTIDALFWTATEPKNSKREHFGVL
THVLFTLIYVFLHSGLIMFQATCLNVAVNSNNKGLLTIMISNNFVELKGS
VFKKFDKNNLFQLTCSDVRERFHLSVLLFIVVIQTMKEFDWSITQFCVML
PDCFAVLFTEILIDWVKHAFITRFNELPESIYREYTTSLAYDMTQTRQKH
AFSDHSDLVARRMGFIPFPLAVVLIKAIYTAVSFENLAAWLLFLLAYLFA
MGLRICLTICALGKACKLMKEHQTERNSSTPSSMTNVPVIGAAAPVSAAA
TGGQNHNNNNNNNNNSISIGSKPAQVTTLLTPPSAGHLDVSKNFSRTSIA
STSTPKKAVSEQELDVTNSLELGATALFSNSDVDLDDVCLNEQVTNTNTS
SAVQEVYQEQDLVRSQPDLMLLNNSGDGVTSAKAKKATQRLPKRTHKRSE
SEPGMPSMVEKGGAAGIAGGNQTTQL*

GH03607.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7218-PB 676 CG7218-PB 1..676 1..676 3459 100 Plus
CG7218-PA 676 CG7218-PA 1..676 1..676 3459 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20187-PA 688 GA20187-PA 1..688 1..676 2712 79.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14805-PA 190 GE14805-PA 1..190 484..676 838 87.6 Plus

GH03607.hyp Sequence

Translation from 68 to 2098

> GH03607.hyp
MNATLNSAGGKRQLRFRGDVTGSRVEELHHQQQEEQKQKAPLAQDDVAAT
PTATPAAGSAQQRLQSGTAETCTNTFYDFFKVEMTRGYMLEHDEERYSAR
RQKIYSFMRIPRDLERFMVYGIMQCADSFLYIHTFLPVRFVMAVWALVSR
TVARIFRLRSSGQRLLSPAEICDLLKGVIWMTVTLIMLLVDTNRVYHIIK
SQSIIKLYIFYNMLEVGDRLLSAFGQDTIDALFWTATEPKNSKREHFGVL
THVLFTLIYVFLHSGLIMFQATCLNVAVNSNNKGLLTIMISNNFVELKGS
VFKKFDKNNLFQLTCSDVRERFHLSVLLFIVVIQTMKEFDWSITQFCVML
PDCFAVLFTEILIDWVKHAFITRFNELPESIYREYTTSLAYDMTQTRQKH
AFSDHSDLVARRMGFIPFPLAVVLIKAIYTAVSFENLAAWLLFLLAYLFA
MGLRICLTICALGKACKLMKEHQTERNSSTPSSMTNVPVIGAAAPVSAAA
TGGQNHNNNNNNNNNSISIGSKPAQVTTLLTPPSAGHLDVSKNFSRTSIA
STSTPKKAVSEQELDVTNSLELGATALFSNSDVDLDDVCLNEQVTNTNTS
SAVQEVYQEQDLVRSQPDLMLLNNSGDGVTSAKAKKATQRLPKRTHKRSE
SEPGMPSMVEKGGAAGIAGGNQTTQL*

GH03607.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7218-PB 676 CG7218-PB 1..676 1..676 3459 100 Plus
CG7218-PA 676 CG7218-PA 1..676 1..676 3459 100 Plus