BDGP Sequence Production Resources |
Search the DGRC for GH03617
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 36 |
Well: | 17 |
Vector: | pOT2 |
Associated Gene/Transcript | Npl4-RA |
Protein status: | GH03617.pep: gold |
Preliminary Size: | 2460 |
Sequenced Size: | 2394 |
Gene | Date | Evidence |
---|---|---|
CG4673 | 2001-01-01 | Release 2 assignment |
CG4673 | 2001-09-19 | Blastp of sequenced clone |
CG4673 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4673 | 2008-04-29 | Release 5.5 accounting |
CG4673 | 2008-08-15 | Release 5.9 accounting |
CG4673 | 2008-12-18 | 5.12 accounting |
2394 bp assembled on 2006-11-09
GenBank Submission: AY058286
> GH03617.complete CCTTCATGACGTACAGTTCGAAACACTAAGCAAAAAGCCCTACAGGCTTT GGTAGCTAATAGCTACACTTGACAATCCCCCTTACCCAATCTACCACCCA CCACCGCCCACACAAGAGCCCACCCAACCGCCCATCACCCAGTGACCCGT CCAGAAAGTCCAGAAAATGGCCTGTGCACCACTGCTGCTCGAGCAATTCA TCTACAAGAAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTGTTT GTGTTATGTAAACAATCGCTAATTCGCGTTCAGTCGGCGGAGGGCATCAA ACGCATCGAGATCTCGCCCAAGTCAAATCTAAAGCATCTGTACGACAGCG TTCAGAATGCCCTGAAGGTGGATGGATTTGGTCTCTTCAAGGAGCGCAAC TTCCTCACAGAGCTGCAGGCAAGTGGCTCCCAGCTGGTGGGGACTTCCTT GAGGCATGGCGACATGGTCTACTTAAAACAGATGGCTGGCACATCATCGC GCCGCACTAGCACCACTGTCCTGGACAGTCAGGCGTTCAAGACTAGCACC ATTAGCAATCCAAACAGCGCTCGTCCATCCTTCAATGTGATCGAAGATGA CGTGGACCAGGCTCTGAGCAAGGCTGATGGCACCATTAAGCGCGAACGTG ATAGCAAGCTGTGCCACCACAATGCCAACGGCCGTTGCGTTCACTGCTCC GCACTGGAGCCCTATGATGAGTCCTATCTGAAGGAGCACAATATCAAGCA CTTGTCCTTCCACTCGTACATACGAAAGCAGACATCCGGCATGGATCAGG GCAAGTACTTTGTCTTCGACGACATCAATTGCCGCATCAAGCCGGGATGT CGCGAGCATCCACCATGGCCCAAGGGCATCTGCTCCAAGTGCCAGCCGTC GGCCATTACGCTGAATCGTCAGACATATCGCCACGTGGACAACGTCATGT TCGAGAACACTAAGATCGTGGAGCGCTTCCTCAACTACTGGCGCACCACA GGACACCAGCGCATGGGATATCTGTATGGGACGTACGAGCAGCACACTGA TGTTCCGTTGGGCATTCGGGCCAAGGTGGCTGCCATTTATGAGCCGCCAC AAGAGTCTACCAGGGATTCGATCAATATTCAGCCGGATGAGTTCGCCGAC GATGTGGATGCCGTAGCCAGTGCGCTGGGACTGAAGAAGATTGGTTGGAT TTTCACTGATCTCATCACGGACGATGCGAGTATCGGCACTGTCAAACAGA TCCGTGGCATCGAGTCGCACTTTATTACGGCCCAGGAGTGCATCACAGCT GGCGAGCTGCAGAATCGACATCCAAATCCGTGTAAATATGCCTCCAATGG CGTCTTCGGCTCTAAGTTTGTGACCATTTGTGTAACAGGAGATAAAACCA AACAAGTGCACATGGAAGGCTATGCGGTTTCGGCTCAGTGCATGGCTCTG GTGCGCGATAATTGTCTGATACCCACTAAGGATGCGCCCGAGCTGGGCTA CGTGCGTGAATCCACGGACAAGCAGTATGTTCCCGACGTTTTCTATAAGG AGAAGGATCTGTACGGCAACGAGGTGCAGCGGCTGGCTCGCCCCCTGCCC GTGGAGTATTTGCTGGTGGACGTGCCCGCATCCACACCGCTGCAACCCAT TTACACCTTCACCGAGTACGACAAGCGCCAGCCATTCCCCATCGAGAACC GCTACATCGATGGCCACCTGCAGGATTTCAATGCACTCAGCTGCTATCTG TCCGCCTGGGGCGAGGAGGAGTTCCTGGAGGCCATCTCCGATTTCCACCT GCTGGTCTACCTGTACAAGATGGACATGCTGCCGCTGCGACAGCACATGG GTCCGCTGCTGGAGGCAGTTCGCACCAAGAACCCCAACCAGGCCGCCCAG TTCAAGGTCGTGGATGTGTGGAAGCTGCTCGAGTCGCTTATCCAGGCCAG TTCCGGCGGCAGTGGTGGAACCACCAGCTATCCCAGTGGTGGAGCTTCGG CCAGTGCCGGAGCTTCTGGATCGGAGGCAATGGACTTGGACGCCAACACC TGGACATGCAACCACTGCACCTTCATCAACCGCGGCGAGCTAACGTCCTG CGAGATCTGCTCGCTACCCAGATAAGAATCCCAGACACGAAAATTTCCAC AATTTGCAGCCTAGATGAACCATTCGAAATTCCGGTGTAAAACAAACTAA AGATTCAATCATACTTACTTACTAGCAGCGACTGGAAAACATGGGTGTCC TGCGAACACACGTACACATGCACACTTAGAGGCGGTTCGTGCGAATGTCG CGCATTCTCTATATGTAATCCTTGTGTAAGAATTTTATAAAATAAAACGA AATGATGGAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 21445374..21445909 | 1196..661 | 2650 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 21434523..21434940 | 1965..1548 | 2075 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 21434054..21434451 | 2362..1965 | 1990 | 100 | Minus |
chr3R | 27901430 | chr3R | 21446497..21446764 | 268..1 | 1340 | 100 | Minus |
chr3R | 27901430 | chr3R | 21446191..21446425 | 502..268 | 1145 | 99.1 | Minus |
chr3R | 27901430 | chr3R | 21445121..21445322 | 1389..1188 | 1010 | 100 | Minus |
chr3R | 27901430 | chr3R | 21444898..21445063 | 1550..1385 | 830 | 100 | Minus |
chr3R | 27901430 | chr3R | 21445969..21446128 | 662..503 | 800 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 25622355..25622890 | 1196..661 | 2650 | 99.6 | Minus |
3R | 32079331 | 3R | 25611522..25611939 | 1965..1548 | 2090 | 100 | Minus |
3R | 32079331 | 3R | 25611049..25611450 | 2366..1965 | 2010 | 100 | Minus |
3R | 32079331 | 3R | 25623478..25623745 | 268..1 | 1340 | 100 | Minus |
3R | 32079331 | 3R | 25623172..25623406 | 502..268 | 1175 | 100 | Minus |
3R | 32079331 | 3R | 25622102..25622303 | 1389..1188 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 25621879..25622044 | 1550..1385 | 830 | 100 | Minus |
3R | 32079331 | 3R | 25622950..25623109 | 662..503 | 800 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 25363186..25363721 | 1196..661 | 2650 | 99.6 | Minus |
3R | 31820162 | 3R | 25352353..25352770 | 1965..1548 | 2090 | 100 | Minus |
3R | 31820162 | 3R | 25351880..25352281 | 2366..1965 | 2010 | 100 | Minus |
3R | 31820162 | 3R | 25364309..25364576 | 268..1 | 1340 | 100 | Minus |
3R | 31820162 | 3R | 25364003..25364237 | 502..268 | 1175 | 100 | Minus |
3R | 31820162 | 3R | 25362933..25363134 | 1389..1188 | 1010 | 100 | Minus |
3R | 31820162 | 3R | 25362710..25362875 | 1550..1385 | 830 | 100 | Minus |
3R | 31820162 | 3R | 25363781..25363940 | 662..503 | 800 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 21434054..21434450 | 1966..2362 | 100 | <- | Minus |
chr3R | 21434523..21434938 | 1550..1965 | 99 | <- | Minus |
chr3R | 21444899..21445059 | 1389..1549 | 100 | <- | Minus |
chr3R | 21445122..21445320 | 1190..1388 | 100 | <- | Minus |
chr3R | 21445381..21445909 | 661..1189 | 100 | <- | Minus |
chr3R | 21445971..21446128 | 503..660 | 100 | <- | Minus |
chr3R | 21446191..21446424 | 269..502 | 99 | <- | Minus |
chr3R | 21446497..21446764 | 1..268 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4673-RA | 1..1959 | 167..2125 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4673-RA | 1..1959 | 167..2125 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Npl4-RA | 1..1959 | 167..2125 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4673-RA | 1..1959 | 167..2125 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Npl4-RA | 1..1959 | 167..2125 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4673-RA | 1..2354 | 9..2362 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4673-RA | 1..2362 | 1..2362 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Npl4-RA | 1..2362 | 1..2362 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4673-RA | 1..2354 | 9..2362 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Npl4-RA | 1..2362 | 1..2362 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25611053..25611449 | 1966..2362 | 100 | <- | Minus |
3R | 25611522..25611937 | 1550..1965 | 100 | <- | Minus |
3R | 25621880..25622040 | 1389..1549 | 100 | <- | Minus |
3R | 25622103..25622301 | 1190..1388 | 100 | <- | Minus |
3R | 25622362..25622890 | 661..1189 | 100 | <- | Minus |
3R | 25622952..25623109 | 503..660 | 100 | <- | Minus |
3R | 25623172..25623405 | 269..502 | 100 | <- | Minus |
3R | 25623478..25623745 | 1..268 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25611053..25611449 | 1966..2362 | 100 | <- | Minus |
3R | 25611522..25611937 | 1550..1965 | 100 | <- | Minus |
3R | 25621880..25622040 | 1389..1549 | 100 | <- | Minus |
3R | 25622103..25622301 | 1190..1388 | 100 | <- | Minus |
3R | 25622362..25622890 | 661..1189 | 100 | <- | Minus |
3R | 25622952..25623109 | 503..660 | 100 | <- | Minus |
3R | 25623172..25623405 | 269..502 | 100 | <- | Minus |
3R | 25623478..25623745 | 1..268 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25611053..25611449 | 1966..2362 | 100 | <- | Minus |
3R | 25611522..25611937 | 1550..1965 | 100 | <- | Minus |
3R | 25621880..25622040 | 1389..1549 | 100 | <- | Minus |
3R | 25622103..25622301 | 1190..1388 | 100 | <- | Minus |
3R | 25622362..25622890 | 661..1189 | 100 | <- | Minus |
3R | 25622952..25623109 | 503..660 | 100 | <- | Minus |
3R | 25623172..25623405 | 269..502 | 100 | <- | Minus |
3R | 25623478..25623745 | 1..268 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 21448674..21448831 | 503..660 | 100 | <- | Minus |
arm_3R | 21437244..21437659 | 1550..1965 | 100 | <- | Minus |
arm_3R | 21447602..21447762 | 1389..1549 | 100 | <- | Minus |
arm_3R | 21447825..21448023 | 1190..1388 | 100 | <- | Minus |
arm_3R | 21436775..21437171 | 1966..2362 | 100 | <- | Minus |
arm_3R | 21448084..21448612 | 661..1189 | 100 | <- | Minus |
arm_3R | 21448894..21449127 | 269..502 | 100 | <- | Minus |
arm_3R | 21449200..21449467 | 1..268 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25351884..25352280 | 1966..2362 | 100 | <- | Minus |
3R | 25352353..25352768 | 1550..1965 | 100 | <- | Minus |
3R | 25362711..25362871 | 1389..1549 | 100 | <- | Minus |
3R | 25362934..25363132 | 1190..1388 | 100 | <- | Minus |
3R | 25363193..25363721 | 661..1189 | 100 | <- | Minus |
3R | 25363783..25363940 | 503..660 | 100 | <- | Minus |
3R | 25364003..25364236 | 269..502 | 100 | <- | Minus |
3R | 25364309..25364576 | 1..268 | 100 | Minus |
Translation from 166 to 2124
> GH03617.pep MACAPLLLEQFIYKKRNFAYAFVRHRLFVLCKQSLIRVQSAEGIKRIEIS PKSNLKHLYDSVQNALKVDGFGLFKERNFLTELQASGSQLVGTSLRHGDM VYLKQMAGTSSRRTSTTVLDSQAFKTSTISNPNSARPSFNVIEDDVDQAL SKADGTIKRERDSKLCHHNANGRCVHCSALEPYDESYLKEHNIKHLSFHS YIRKQTSGMDQGKYFVFDDINCRIKPGCREHPPWPKGICSKCQPSAITLN RQTYRHVDNVMFENTKIVERFLNYWRTTGHQRMGYLYGTYEQHTDVPLGI RAKVAAIYEPPQESTRDSINIQPDEFADDVDAVASALGLKKIGWIFTDLI TDDASIGTVKQIRGIESHFITAQECITAGELQNRHPNPCKYASNGVFGSK FVTICVTGDKTKQVHMEGYAVSAQCMALVRDNCLIPTKDAPELGYVREST DKQYVPDVFYKEKDLYGNEVQRLARPLPVEYLLVDVPASTPLQPIYTFTE YDKRQPFPIENRYIDGHLQDFNALSCYLSAWGEEEFLEAISDFHLLVYLY KMDMLPLRQHMGPLLEAVRTKNPNQAAQFKVVDVWKLLESLIQASSGGSG GTTSYPSGGASASAGASGSEAMDLDANTWTCNHCTFINRGELTSCEICSL PR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17266-PA | 657 | GF17266-PA | 1..657 | 1..652 | 3132 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12234-PA | 624 | GG12234-PA | 7..624 | 35..652 | 3320 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18610-PA | 655 | GH18610-PA | 1..655 | 1..652 | 3066 | 87.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Npl4-PA | 652 | CG4673-PA | 1..652 | 1..652 | 3459 | 100 | Plus |
Npl4-PD | 624 | CG4673-PD | 7..624 | 35..652 | 3280 | 100 | Plus |
Npl4-PB | 624 | CG4673-PB | 7..624 | 35..652 | 3280 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10357-PA | 653 | GI10357-PA | 1..653 | 1..652 | 3124 | 88.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21676-PA | 443 | GL21676-PA | 1..430 | 1..461 | 1989 | 79.4 | Plus |
Dper\GL21677-PA | 194 | GL21677-PA | 2..194 | 461..652 | 783 | 85 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18345-PA | 659 | GA18345-PA | 1..659 | 1..652 | 3027 | 86.8 | Plus |
Dpse\GA18345-PB | 630 | GA18345-PB | 6..630 | 35..652 | 2882 | 87.5 | Plus |
Dpse\GA18345-PC | 560 | GA18345-PC | 1..560 | 100..652 | 2564 | 87.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10234-PA | 725 | GM10234-PA | 1..552 | 1..552 | 2980 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18187-PA | 641 | GD18187-PA | 1..625 | 1..630 | 3334 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10209-PA | 655 | GJ10209-PA | 1..655 | 1..652 | 3115 | 88.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14396-PA | 660 | GK14396-PA | 1..660 | 1..652 | 3091 | 85.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10682-PA | 624 | GE10682-PA | 7..624 | 35..652 | 3323 | 98.2 | Plus |
Translation from 166 to 2124
> GH03617.hyp MACAPLLLEQFIYKKRNFAYAFVRHRLFVLCKQSLIRVQSAEGIKRIEIS PKSNLKHLYDSVQNALKVDGFGLFKERNFLTELQASGSQLVGTSLRHGDM VYLKQMAGTSSRRTSTTVLDSQAFKTSTISNPNSARPSFNVIEDDVDQAL SKADGTIKRERDSKLCHHNANGRCVHCSALEPYDESYLKEHNIKHLSFHS YIRKQTSGMDQGKYFVFDDINCRIKPGCREHPPWPKGICSKCQPSAITLN RQTYRHVDNVMFENTKIVERFLNYWRTTGHQRMGYLYGTYEQHTDVPLGI RAKVAAIYEPPQESTRDSINIQPDEFADDVDAVASALGLKKIGWIFTDLI TDDASIGTVKQIRGIESHFITAQECITAGELQNRHPNPCKYASNGVFGSK FVTICVTGDKTKQVHMEGYAVSAQCMALVRDNCLIPTKDAPELGYVREST DKQYVPDVFYKEKDLYGNEVQRLARPLPVEYLLVDVPASTPLQPIYTFTE YDKRQPFPIENRYIDGHLQDFNALSCYLSAWGEEEFLEAISDFHLLVYLY KMDMLPLRQHMGPLLEAVRTKNPNQAAQFKVVDVWKLLESLIQASSGGSG GTTSYPSGGASASAGASGSEAMDLDANTWTCNHCTFINRGELTSCEICSL PR*