Clone GH03617 Report

Search the DGRC for GH03617

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:36
Well:17
Vector:pOT2
Associated Gene/TranscriptNpl4-RA
Protein status:GH03617.pep: gold
Preliminary Size:2460
Sequenced Size:2394

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4673 2001-01-01 Release 2 assignment
CG4673 2001-09-19 Blastp of sequenced clone
CG4673 2003-01-01 Sim4 clustering to Release 3
CG4673 2008-04-29 Release 5.5 accounting
CG4673 2008-08-15 Release 5.9 accounting
CG4673 2008-12-18 5.12 accounting

Clone Sequence Records

GH03617.complete Sequence

2394 bp assembled on 2006-11-09

GenBank Submission: AY058286

> GH03617.complete
CCTTCATGACGTACAGTTCGAAACACTAAGCAAAAAGCCCTACAGGCTTT
GGTAGCTAATAGCTACACTTGACAATCCCCCTTACCCAATCTACCACCCA
CCACCGCCCACACAAGAGCCCACCCAACCGCCCATCACCCAGTGACCCGT
CCAGAAAGTCCAGAAAATGGCCTGTGCACCACTGCTGCTCGAGCAATTCA
TCTACAAGAAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTGTTT
GTGTTATGTAAACAATCGCTAATTCGCGTTCAGTCGGCGGAGGGCATCAA
ACGCATCGAGATCTCGCCCAAGTCAAATCTAAAGCATCTGTACGACAGCG
TTCAGAATGCCCTGAAGGTGGATGGATTTGGTCTCTTCAAGGAGCGCAAC
TTCCTCACAGAGCTGCAGGCAAGTGGCTCCCAGCTGGTGGGGACTTCCTT
GAGGCATGGCGACATGGTCTACTTAAAACAGATGGCTGGCACATCATCGC
GCCGCACTAGCACCACTGTCCTGGACAGTCAGGCGTTCAAGACTAGCACC
ATTAGCAATCCAAACAGCGCTCGTCCATCCTTCAATGTGATCGAAGATGA
CGTGGACCAGGCTCTGAGCAAGGCTGATGGCACCATTAAGCGCGAACGTG
ATAGCAAGCTGTGCCACCACAATGCCAACGGCCGTTGCGTTCACTGCTCC
GCACTGGAGCCCTATGATGAGTCCTATCTGAAGGAGCACAATATCAAGCA
CTTGTCCTTCCACTCGTACATACGAAAGCAGACATCCGGCATGGATCAGG
GCAAGTACTTTGTCTTCGACGACATCAATTGCCGCATCAAGCCGGGATGT
CGCGAGCATCCACCATGGCCCAAGGGCATCTGCTCCAAGTGCCAGCCGTC
GGCCATTACGCTGAATCGTCAGACATATCGCCACGTGGACAACGTCATGT
TCGAGAACACTAAGATCGTGGAGCGCTTCCTCAACTACTGGCGCACCACA
GGACACCAGCGCATGGGATATCTGTATGGGACGTACGAGCAGCACACTGA
TGTTCCGTTGGGCATTCGGGCCAAGGTGGCTGCCATTTATGAGCCGCCAC
AAGAGTCTACCAGGGATTCGATCAATATTCAGCCGGATGAGTTCGCCGAC
GATGTGGATGCCGTAGCCAGTGCGCTGGGACTGAAGAAGATTGGTTGGAT
TTTCACTGATCTCATCACGGACGATGCGAGTATCGGCACTGTCAAACAGA
TCCGTGGCATCGAGTCGCACTTTATTACGGCCCAGGAGTGCATCACAGCT
GGCGAGCTGCAGAATCGACATCCAAATCCGTGTAAATATGCCTCCAATGG
CGTCTTCGGCTCTAAGTTTGTGACCATTTGTGTAACAGGAGATAAAACCA
AACAAGTGCACATGGAAGGCTATGCGGTTTCGGCTCAGTGCATGGCTCTG
GTGCGCGATAATTGTCTGATACCCACTAAGGATGCGCCCGAGCTGGGCTA
CGTGCGTGAATCCACGGACAAGCAGTATGTTCCCGACGTTTTCTATAAGG
AGAAGGATCTGTACGGCAACGAGGTGCAGCGGCTGGCTCGCCCCCTGCCC
GTGGAGTATTTGCTGGTGGACGTGCCCGCATCCACACCGCTGCAACCCAT
TTACACCTTCACCGAGTACGACAAGCGCCAGCCATTCCCCATCGAGAACC
GCTACATCGATGGCCACCTGCAGGATTTCAATGCACTCAGCTGCTATCTG
TCCGCCTGGGGCGAGGAGGAGTTCCTGGAGGCCATCTCCGATTTCCACCT
GCTGGTCTACCTGTACAAGATGGACATGCTGCCGCTGCGACAGCACATGG
GTCCGCTGCTGGAGGCAGTTCGCACCAAGAACCCCAACCAGGCCGCCCAG
TTCAAGGTCGTGGATGTGTGGAAGCTGCTCGAGTCGCTTATCCAGGCCAG
TTCCGGCGGCAGTGGTGGAACCACCAGCTATCCCAGTGGTGGAGCTTCGG
CCAGTGCCGGAGCTTCTGGATCGGAGGCAATGGACTTGGACGCCAACACC
TGGACATGCAACCACTGCACCTTCATCAACCGCGGCGAGCTAACGTCCTG
CGAGATCTGCTCGCTACCCAGATAAGAATCCCAGACACGAAAATTTCCAC
AATTTGCAGCCTAGATGAACCATTCGAAATTCCGGTGTAAAACAAACTAA
AGATTCAATCATACTTACTTACTAGCAGCGACTGGAAAACATGGGTGTCC
TGCGAACACACGTACACATGCACACTTAGAGGCGGTTCGTGCGAATGTCG
CGCATTCTCTATATGTAATCCTTGTGTAAGAATTTTATAAAATAAAACGA
AATGATGGAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH03617.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4673-RA 2407 CG4673-RA 2..2367 1..2366 11830 100 Plus
CG4673.a 2402 CG4673.a 1..2366 1..2366 11830 100 Plus
CG4673.d 2173 CG4673.d 39..2137 268..2366 10495 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21445374..21445909 1196..661 2650 99.6 Minus
chr3R 27901430 chr3R 21434523..21434940 1965..1548 2075 99.8 Minus
chr3R 27901430 chr3R 21434054..21434451 2362..1965 1990 100 Minus
chr3R 27901430 chr3R 21446497..21446764 268..1 1340 100 Minus
chr3R 27901430 chr3R 21446191..21446425 502..268 1145 99.1 Minus
chr3R 27901430 chr3R 21445121..21445322 1389..1188 1010 100 Minus
chr3R 27901430 chr3R 21444898..21445063 1550..1385 830 100 Minus
chr3R 27901430 chr3R 21445969..21446128 662..503 800 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:29:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25622355..25622890 1196..661 2650 99.6 Minus
3R 32079331 3R 25611522..25611939 1965..1548 2090 100 Minus
3R 32079331 3R 25611049..25611450 2366..1965 2010 100 Minus
3R 32079331 3R 25623478..25623745 268..1 1340 100 Minus
3R 32079331 3R 25623172..25623406 502..268 1175 100 Minus
3R 32079331 3R 25622102..25622303 1389..1188 1010 100 Minus
3R 32079331 3R 25621879..25622044 1550..1385 830 100 Minus
3R 32079331 3R 25622950..25623109 662..503 800 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25363186..25363721 1196..661 2650 99.6 Minus
3R 31820162 3R 25352353..25352770 1965..1548 2090 100 Minus
3R 31820162 3R 25351880..25352281 2366..1965 2010 100 Minus
3R 31820162 3R 25364309..25364576 268..1 1340 100 Minus
3R 31820162 3R 25364003..25364237 502..268 1175 100 Minus
3R 31820162 3R 25362933..25363134 1389..1188 1010 100 Minus
3R 31820162 3R 25362710..25362875 1550..1385 830 100 Minus
3R 31820162 3R 25363781..25363940 662..503 800 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:37:06 has no hits.

GH03617.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:37:47 Download gff for GH03617.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21434054..21434450 1966..2362 100 <- Minus
chr3R 21434523..21434938 1550..1965 99 <- Minus
chr3R 21444899..21445059 1389..1549 100 <- Minus
chr3R 21445122..21445320 1190..1388 100 <- Minus
chr3R 21445381..21445909 661..1189 100 <- Minus
chr3R 21445971..21446128 503..660 100 <- Minus
chr3R 21446191..21446424 269..502 99 <- Minus
chr3R 21446497..21446764 1..268 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:42:32 Download gff for GH03617.complete
Subject Subject Range Query Range Percent Splice Strand
CG4673-RA 1..1959 167..2125 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:20:45 Download gff for GH03617.complete
Subject Subject Range Query Range Percent Splice Strand
CG4673-RA 1..1959 167..2125 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:36:56 Download gff for GH03617.complete
Subject Subject Range Query Range Percent Splice Strand
Npl4-RA 1..1959 167..2125 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:37:52 Download gff for GH03617.complete
Subject Subject Range Query Range Percent Splice Strand
CG4673-RA 1..1959 167..2125 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:46:26 Download gff for GH03617.complete
Subject Subject Range Query Range Percent Splice Strand
Npl4-RA 1..1959 167..2125 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:42:31 Download gff for GH03617.complete
Subject Subject Range Query Range Percent Splice Strand
CG4673-RA 1..2354 9..2362 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:20:45 Download gff for GH03617.complete
Subject Subject Range Query Range Percent Splice Strand
CG4673-RA 1..2362 1..2362 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:56 Download gff for GH03617.complete
Subject Subject Range Query Range Percent Splice Strand
Npl4-RA 1..2362 1..2362 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:37:53 Download gff for GH03617.complete
Subject Subject Range Query Range Percent Splice Strand
CG4673-RA 1..2354 9..2362 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:46:26 Download gff for GH03617.complete
Subject Subject Range Query Range Percent Splice Strand
Npl4-RA 1..2362 1..2362 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:47 Download gff for GH03617.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25611053..25611449 1966..2362 100 <- Minus
3R 25611522..25611937 1550..1965 100 <- Minus
3R 25621880..25622040 1389..1549 100 <- Minus
3R 25622103..25622301 1190..1388 100 <- Minus
3R 25622362..25622890 661..1189 100 <- Minus
3R 25622952..25623109 503..660 100 <- Minus
3R 25623172..25623405 269..502 100 <- Minus
3R 25623478..25623745 1..268 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:47 Download gff for GH03617.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25611053..25611449 1966..2362 100 <- Minus
3R 25611522..25611937 1550..1965 100 <- Minus
3R 25621880..25622040 1389..1549 100 <- Minus
3R 25622103..25622301 1190..1388 100 <- Minus
3R 25622362..25622890 661..1189 100 <- Minus
3R 25622952..25623109 503..660 100 <- Minus
3R 25623172..25623405 269..502 100 <- Minus
3R 25623478..25623745 1..268 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:47 Download gff for GH03617.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25611053..25611449 1966..2362 100 <- Minus
3R 25611522..25611937 1550..1965 100 <- Minus
3R 25621880..25622040 1389..1549 100 <- Minus
3R 25622103..25622301 1190..1388 100 <- Minus
3R 25622362..25622890 661..1189 100 <- Minus
3R 25622952..25623109 503..660 100 <- Minus
3R 25623172..25623405 269..502 100 <- Minus
3R 25623478..25623745 1..268 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:56 Download gff for GH03617.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21448674..21448831 503..660 100 <- Minus
arm_3R 21437244..21437659 1550..1965 100 <- Minus
arm_3R 21447602..21447762 1389..1549 100 <- Minus
arm_3R 21447825..21448023 1190..1388 100 <- Minus
arm_3R 21436775..21437171 1966..2362 100 <- Minus
arm_3R 21448084..21448612 661..1189 100 <- Minus
arm_3R 21448894..21449127 269..502 100 <- Minus
arm_3R 21449200..21449467 1..268 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:49:42 Download gff for GH03617.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25351884..25352280 1966..2362 100 <- Minus
3R 25352353..25352768 1550..1965 100 <- Minus
3R 25362711..25362871 1389..1549 100 <- Minus
3R 25362934..25363132 1190..1388 100 <- Minus
3R 25363193..25363721 661..1189 100 <- Minus
3R 25363783..25363940 503..660 100 <- Minus
3R 25364003..25364236 269..502 100 <- Minus
3R 25364309..25364576 1..268 100   Minus

GH03617.pep Sequence

Translation from 166 to 2124

> GH03617.pep
MACAPLLLEQFIYKKRNFAYAFVRHRLFVLCKQSLIRVQSAEGIKRIEIS
PKSNLKHLYDSVQNALKVDGFGLFKERNFLTELQASGSQLVGTSLRHGDM
VYLKQMAGTSSRRTSTTVLDSQAFKTSTISNPNSARPSFNVIEDDVDQAL
SKADGTIKRERDSKLCHHNANGRCVHCSALEPYDESYLKEHNIKHLSFHS
YIRKQTSGMDQGKYFVFDDINCRIKPGCREHPPWPKGICSKCQPSAITLN
RQTYRHVDNVMFENTKIVERFLNYWRTTGHQRMGYLYGTYEQHTDVPLGI
RAKVAAIYEPPQESTRDSINIQPDEFADDVDAVASALGLKKIGWIFTDLI
TDDASIGTVKQIRGIESHFITAQECITAGELQNRHPNPCKYASNGVFGSK
FVTICVTGDKTKQVHMEGYAVSAQCMALVRDNCLIPTKDAPELGYVREST
DKQYVPDVFYKEKDLYGNEVQRLARPLPVEYLLVDVPASTPLQPIYTFTE
YDKRQPFPIENRYIDGHLQDFNALSCYLSAWGEEEFLEAISDFHLLVYLY
KMDMLPLRQHMGPLLEAVRTKNPNQAAQFKVVDVWKLLESLIQASSGGSG
GTTSYPSGGASASAGASGSEAMDLDANTWTCNHCTFINRGELTSCEICSL
PR*

GH03617.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17266-PA 657 GF17266-PA 1..657 1..652 3132 92.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12234-PA 624 GG12234-PA 7..624 35..652 3320 98.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18610-PA 655 GH18610-PA 1..655 1..652 3066 87.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
Npl4-PA 652 CG4673-PA 1..652 1..652 3459 100 Plus
Npl4-PD 624 CG4673-PD 7..624 35..652 3280 100 Plus
Npl4-PB 624 CG4673-PB 7..624 35..652 3280 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10357-PA 653 GI10357-PA 1..653 1..652 3124 88.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21676-PA 443 GL21676-PA 1..430 1..461 1989 79.4 Plus
Dper\GL21677-PA 194 GL21677-PA 2..194 461..652 783 85 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18345-PA 659 GA18345-PA 1..659 1..652 3027 86.8 Plus
Dpse\GA18345-PB 630 GA18345-PB 6..630 35..652 2882 87.5 Plus
Dpse\GA18345-PC 560 GA18345-PC 1..560 100..652 2564 87.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10234-PA 725 GM10234-PA 1..552 1..552 2980 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18187-PA 641 GD18187-PA 1..625 1..630 3334 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10209-PA 655 GJ10209-PA 1..655 1..652 3115 88.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14396-PA 660 GK14396-PA 1..660 1..652 3091 85.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10682-PA 624 GE10682-PA 7..624 35..652 3323 98.2 Plus

GH03617.hyp Sequence

Translation from 166 to 2124

> GH03617.hyp
MACAPLLLEQFIYKKRNFAYAFVRHRLFVLCKQSLIRVQSAEGIKRIEIS
PKSNLKHLYDSVQNALKVDGFGLFKERNFLTELQASGSQLVGTSLRHGDM
VYLKQMAGTSSRRTSTTVLDSQAFKTSTISNPNSARPSFNVIEDDVDQAL
SKADGTIKRERDSKLCHHNANGRCVHCSALEPYDESYLKEHNIKHLSFHS
YIRKQTSGMDQGKYFVFDDINCRIKPGCREHPPWPKGICSKCQPSAITLN
RQTYRHVDNVMFENTKIVERFLNYWRTTGHQRMGYLYGTYEQHTDVPLGI
RAKVAAIYEPPQESTRDSINIQPDEFADDVDAVASALGLKKIGWIFTDLI
TDDASIGTVKQIRGIESHFITAQECITAGELQNRHPNPCKYASNGVFGSK
FVTICVTGDKTKQVHMEGYAVSAQCMALVRDNCLIPTKDAPELGYVREST
DKQYVPDVFYKEKDLYGNEVQRLARPLPVEYLLVDVPASTPLQPIYTFTE
YDKRQPFPIENRYIDGHLQDFNALSCYLSAWGEEEFLEAISDFHLLVYLY
KMDMLPLRQHMGPLLEAVRTKNPNQAAQFKVVDVWKLLESLIQASSGGSG
GTTSYPSGGASASAGASGSEAMDLDANTWTCNHCTFINRGELTSCEICSL
PR*

GH03617.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
Npl4-PA 652 CG4673-PA 1..652 1..652 3459 100 Plus
Npl4-PD 624 CG4673-PD 7..624 35..652 3280 100 Plus
Npl4-PB 624 CG4673-PB 7..624 35..652 3280 100 Plus