Clone GH03629 Report

Search the DGRC for GH03629

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:36
Well:29
Vector:pOT2
Associated Gene/TranscriptCG30412-RA
Protein status:GH03629.pep: gold
Preliminary Size:1236
Sequenced Size:1089

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9803 2001-01-01 Release 2 assignment
CG30412 2002-03-19 Blastp of sequenced clone
CG30412 2003-01-01 Sim4 clustering to Release 3
CG30412 2008-04-29 Release 5.5 accounting
CG30412 2008-08-15 Release 5.9 accounting
CG30412 2008-12-18 5.12 accounting

Clone Sequence Records

GH03629.complete Sequence

1089 bp (1089 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094670

> GH03629.complete
CTGACGCTCACATGTATTCCGTTCAATTTGAATATTCCGGCTTTTTAAAT
AGACAAAATTCAAAACAAATTAAACTATGGAATGATGTGGATACACCGGT
TGCTGATGGACAAGTGCACCCGCTATGGTCATGTGCTGCGGCATTTGATT
CGGGCTTCCAGGCGAACTGCGACCTCAACGGGACATCACCAGAGTGCTTC
GGGAAAGGATGTGCCAATGGTGCAAATAAGTCCCGCCGATTGACCACCAA
GTTGGCTCTCCTCCGGCTGAAGCTCCTTTGGGACTGGGACTTCTCCGAGC
AGAAGTTCATTGAGAATTCGAGCCAGGCAGCCGCCGTTTTTACGGACTTC
GTAAGGCGCCGCCGCAATCGGAATGTGGAGCGATGCAGTACGCCTATGGG
TTTCAAGCAGATCAAGCACGATCTGTTGGATGATCCGCCCGACTGGAGGC
TCAAAATGATGCGCTTCGAGAAGGAGCACTTCCGGCGGGCCATTCCGCTC
AAGGTGCAGCTGCTGCGGCACTACGACCATCGTTTCGCCTTCCTGGACGT
GGTCTTCGTGGCCCTGCGGAGATCCAATGACTTTCGCTCGCCGGCGGAAC
TTAGTGAGATGACGGAGCTGCTAAAGGAGTTCATAGATCCCGCTCAGTTA
AGGGTGCCCCATCCCCTGATCTTCGCCGAGGTGTTCATGCGCTTCCGACG
CGACTATTCCGTGGAACCCTCGAGAATGGGCAATGTGCAGGACAACAGTC
GCTGCATGGGCCAGTGGCTCGTCTCCACGTACAAGGTGGTGCGTTTCGAC
ATCCTCAACCAGCACCCGCTGTTCGATATTCCCGAGTTCGAGGAGTGGAT
GCCTCCGGTGCTGTCCAGGATGGGTCGCAGCTTTGAATAGAGTGCTTCTA
GCAGCTGTGTCATTTTATTGCGTCATTTACTTTGAGAGAAATCATTGTGC
TGTTAGATTCTGGTATGCTGTGGTCAAATTATTAGGTAAACCCGTCTCCA
TTCGCACTGAGCTGTAATTAACCTATTGAGAATCTGCAATAAAATCCGTC
CATGTGATACTCCAAAAAAAAAAAAAAAAAAAAAAAAAA

GH03629.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG30412-RA 1063 CG30412-RA 1..1063 1..1063 5315 100 Plus
CG30412.a 1072 CG30412.a 244..1072 235..1063 4145 100 Plus
CG30412-RB 1160 CG30412-RB 332..1160 235..1063 4145 100 Plus
CG30412.a 1072 CG30412.a 1..237 1..237 1185 100 Plus
CG30412-RB 1160 CG30412-RB 1..235 1..235 1175 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19204535..19205363 1063..235 4130 99.9 Minus
chr2R 21145070 chr2R 19205460..19205694 235..1 1175 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:30:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23318187..23319017 1065..235 4155 100 Minus
2R 25286936 2R 23319114..23319348 235..1 1175 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23319386..23320216 1065..235 4155 100 Minus
2R 25260384 2R 23320313..23320547 235..1 1175 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:49:36 has no hits.

GH03629.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:50:35 Download gff for GH03629.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19204535..19205362 236..1063 99 <- Minus
chr2R 19205460..19205694 1..235 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:11:12 Download gff for GH03629.complete
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 1..879 12..890 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:32:04 Download gff for GH03629.complete
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 1..879 12..890 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:38:01 Download gff for GH03629.complete
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 1..879 12..890 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:05:04 Download gff for GH03629.complete
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 1..879 12..890 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:08:39 Download gff for GH03629.complete
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 1..879 12..890 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:58:03 Download gff for GH03629.complete
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 1..1063 1..1063 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:32:04 Download gff for GH03629.complete
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 1..1063 1..1063 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:01 Download gff for GH03629.complete
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 1..1063 1..1063 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:05:04 Download gff for GH03629.complete
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 1..1063 1..1063 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:08:39 Download gff for GH03629.complete
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 1..1063 1..1063 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:50:35 Download gff for GH03629.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23319114..23319348 1..235 100   Minus
2R 23318189..23319016 236..1063 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:50:35 Download gff for GH03629.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23319114..23319348 1..235 100   Minus
2R 23318189..23319016 236..1063 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:50:35 Download gff for GH03629.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23319114..23319348 1..235 100   Minus
2R 23318189..23319016 236..1063 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:01 Download gff for GH03629.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19206637..19206871 1..235 100   Minus
arm_2R 19205712..19206539 236..1063 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:38:52 Download gff for GH03629.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23319406..23320233 236..1063 100 <- Minus
2R 23320331..23320565 1..235 100   Minus

GH03629.hyp Sequence

Translation from 2 to 889

> GH03629.hyp
DAHMYSVQFEYSGFLNRQNSKQIKLWNDVDTPVADGQVHPLWSCAAAFDS
GFQANCDLNGTSPECFGKGCANGANKSRRLTTKLALLRLKLLWDWDFSEQ
KFIENSSQAAAVFTDFVRRRRNRNVERCSTPMGFKQIKHDLLDDPPDWRL
KMMRFEKEHFRRAIPLKVQLLRHYDHRFAFLDVVFVALRRSNDFRSPAEL
SEMTELLKEFIDPAQLRVPHPLIFAEVFMRFRRDYSVEPSRMGNVQDNSR
CMGQWLVSTYKVVRFDILNQHPLFDIPEFEEWMPPVLSRMGRSFE*

GH03629.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG30412-PA 292 CG30412-PA 1..292 4..295 1566 100 Plus
CG30412-PC 295 CG30412-PC 1..295 4..295 1552 99 Plus
CG30412-PB 301 CG30412-PB 85..301 79..295 1149 100 Plus
CG3092-PA 347 CG3092-PA 83..258 75..245 376 40.9 Plus

GH03629.pep Sequence

Translation from 11 to 889

> GH03629.pep
MYSVQFEYSGFLNRQNSKQIKLWNDVDTPVADGQVHPLWSCAAAFDSGFQ
ANCDLNGTSPECFGKGCANGANKSRRLTTKLALLRLKLLWDWDFSEQKFI
ENSSQAAAVFTDFVRRRRNRNVERCSTPMGFKQIKHDLLDDPPDWRLKMM
RFEKEHFRRAIPLKVQLLRHYDHRFAFLDVVFVALRRSNDFRSPAELSEM
TELLKEFIDPAQLRVPHPLIFAEVFMRFRRDYSVEPSRMGNVQDNSRCMG
QWLVSTYKVVRFDILNQHPLFDIPEFEEWMPPVLSRMGRSFE*

GH03629.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13300-PA 311 GF13300-PA 104..296 89..281 809 75.6 Plus
Dana\GF11565-PA 336 GF11565-PA 63..239 72..243 378 41.8 Plus
Dana\GF11567-PA 271 GF11567-PA 57..271 77..283 192 31.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20049-PA 262 GG20049-PA 34..261 64..291 1017 93.4 Plus
Dere\GG22834-PA 345 GG22834-PA 81..256 72..242 378 41.5 Plus
Dere\GG22840-PA 221 GG22840-PA 7..204 77..269 158 29.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22726-PA 251 GH22726-PA 17..245 72..269 421 40.2 Plus
Dgri\GH22570-PA 266 GH22570-PA 32..260 72..269 421 40.2 Plus
Dgri\GH23048-PA 275 GH23048-PA 85..274 77..268 385 38.7 Plus
Dgri\GH23476-PA 265 GH23476-PA 62..262 72..269 269 33.3 Plus
Dgri\GH23046-PA 479 GH23046-PA 62..225 72..230 217 32.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG30412-PA 292 CG30412-PA 1..292 1..292 1566 100 Plus
CG30412-PC 295 CG30412-PC 1..295 1..292 1552 99 Plus
CG30412-PB 301 CG30412-PB 85..301 76..292 1149 100 Plus
CG3092-PA 347 CG3092-PA 83..258 72..242 376 40.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21120-PA 299 GI21120-PA 93..278 78..273 495 46.4 Plus
Dmoj\GI18512-PA 315 GI18512-PA 77..307 77..269 404 38.1 Plus
Dmoj\GI21117-PA 261 GI21117-PA 67..259 79..269 268 35.3 Plus
Dmoj\GI18516-PA 262 GI18516-PA 58..262 77..283 165 23.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11282-PA 309 GL11282-PA 113..296 91..274 704 66.3 Plus
Dper\GL10783-PA 319 GL10783-PA 55..238 72..250 368 42.4 Plus
Dper\GL11279-PA 261 GL11279-PA 68..260 79..267 210 31.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15828-PA 309 GA15828-PA 113..296 91..274 708 66.3 Plus
Dpse\GA15920-PA 385 GA15920-PA 121..304 72..250 372 42.4 Plus
Dpse\GA24665-PA 261 GA24665-PA 68..260 79..267 207 30.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15563-PA 292 GM15563-PA 1..292 1..292 1381 95.9 Plus
Dsec\GM15992-PA 347 GM15992-PA 83..258 72..242 375 40.9 Plus
Dsec\GM15997-PA 273 GM15997-PA 63..256 77..269 156 28.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25064-PA 359 GD25064-PA 68..359 1..292 1519 96.9 Plus
Dsim\GD11745-PA 349 GD11745-PA 83..349 72..274 377 34 Plus
Dsim\GD11750-PA 217 GD11750-PA 7..200 77..269 157 29.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20966-PA 310 GJ20966-PA 98..289 77..273 535 49.8 Plus
Dvir\GJ21373-PA 307 GJ21373-PA 65..299 77..269 413 40 Plus
Dvir\GJ20965-PA 388 GJ20965-PA 59..205 72..218 191 28.6 Plus
Dvir\GJ21378-PA 259 GJ21378-PA 58..259 77..283 163 24.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19582-PA 256 GK19582-PA 56..241 77..274 562 53.5 Plus
Dwil\GK19556-PA 475 GK19556-PA 54..232 72..245 393 43 Plus
Dwil\GK19559-PA 272 GK19559-PA 67..272 77..283 205 29.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11584-PA 311 GE11584-PA 95..311 76..292 993 94.9 Plus
Dyak\GE14270-PA 348 GE14270-PA 82..257 72..242 378 41.5 Plus
Dyak\GE14276-PA 221 GE14276-PA 7..204 77..269 159 28.8 Plus