Clone GH03683 Report

Search the DGRC for GH03683

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:36
Well:83
Vector:pOT2
Associated Gene/TranscriptVha26-RA
Protein status:GH03683.pep: gold
Preliminary Size:2679
Sequenced Size:2232

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1088 2000-02-14 Blastp of sequenced clone
CG1088 2001-01-01 Release 2 assignment
CG1088 2003-01-01 Sim4 clustering to Release 3
Vha26 2008-04-29 Release 5.5 accounting
Vha26 2008-08-15 Release 5.9 accounting
Vha26 2008-12-18 5.12 accounting

Clone Sequence Records

GH03683.complete Sequence

2232 bp (2232 high quality bases) assembled on 2000-02-14

GenBank Submission: AF145618

> GH03683.complete
GGCACGAGCAAAAGTAACTTATCGTTTTCCACTTTCCTCGTGTTGGGCCG
CCGTTTCCAACTCAGTTCGGCTGTGAATGTATTAGCTTAATTAAATTTCA
ATTATTTCCAGGCACGGTTGTTGTACGTGGGCTTCTTTAAAACACTTGAA
TTTCCTTTCGGTTTGTGCAGTGAAAAAAATCAGTCAAAATGGCACTGAGC
GATGCTGATGTACAAAAGCAGATCAAGCACATGATGGCGTTCATTGAGCA
GGAGGCCAATGAGAAAGCCGAGGAGATCGATGCCAAGGCCGAGGAGGAGT
TCAACATTGAGAAGGGACGCCTGGTCCAGCAGCAGCGTCTCAAGATCATG
GAATACTACGAGAAGAAGGAGAAGCAAGTTGAGCTGCAGAAGAAGATTCA
GTCCTCCAACATGCTCAACCAGGCTCGTCTGAAGGTGCTGAAAGTGCGCG
AGGACCATGTGAGCAGCGTGCTGGATGATGCCCGCAAGCGTCTCGGCGAG
GTCACCAAGAATCAGTCCGAGTACGAGACTGTGCTGACCAAGCTCATCGT
CCAGGGCCTGTTCCAGATCATGGAGCCCAAGGTGATCCTGCGCTGCCGCG
AGGTGGACGTCCCCCTGGTACGTAACGTCCTGCCTGCCGCTGTGGAGCAA
TACAAGGCCCAGATCAATCAGAACGTCGAGCTGTTCATCGACGAGAAAGA
CTTCCTCTCTGCTGATACCTGCGGTGGTGTTGAGCTGCTGGCCCTCAACG
GACGCATCAAGGTGCCCAATACGCTGGAGTCCAGATTAGACCTCATTTCG
CAGCAGCTGGTGCCCGAGATTCGTAACGCACTTTTCGGCCGCAACGTCAA
TCGCAAATTCACCGACTAAATTCTATAAGTGCAAAACAAAACATAACTAA
CCAGAAAGAGAACCAGCATCAACACCTATTCAGCAGGAACAGTTCAAGTT
ATTACAACAGAAGCTCCACCCACTAAATATTGAACCCAAGTAAACTTATC
CTTTGGCAGTCAGGAGGCAACAGCTAGGATTATATTTGATTGCAAAATAC
TTTTGCCGTTGTCTTTGTAAAGTGAAATTGAAACACTCAAGAACATTTCG
GTCCTTGTGTACGCAACAGTTTTAATAGTAACCACACTAAACGCGCATAT
ATATTCTCCGATATATATGTCTGTATGCCAATACTTATTATATAGTTTAG
AGGACACGATCCTAGGAGCATACGAAAGCATAATACGAGTTTGTTAAAGT
TTGTTCGTTTTTTTTTTACATATGCACATATTTCTGAGCAGTAGGTCTAG
ATATGTGCTTATATTGTATACATACACTTTAAAATTTTGCATACATTCCT
GTCCAAGAATTTTTATTTCAGTTTTCCCCTCGTTTATTGTACATTATTTT
CTGTAGTCTTTGTTAACTTTTTATATGTCTATGTCGTTTATGTTCGTAAT
TATCAAGTGCAGCGTTCAGGAGGAACAACGGCAGTGGATCGCCCCTTTTA
CAGAGCCGCTGGCAGGTTGCGCATGCGACCACACAGCATTGTTGCTCAGC
GAAGCACCGAAATGGACCTAAACCCCCGATTTCGCTTCTTCGAGGGCAAC
GGACGCTTGTGCAACTGCCACTGGCTCAACGAAAGCCCCGAAAATCATCA
ATGTCTGTTGTTGTTGAGATACCGAGAGTAGAGAATACACACTGCTTAGC
ACGCGACACTTAATACCCATTCATTACACATGCACCAACGACGATGAAGT
TTTGCCAAGTAGCTAAGTTTGTTGACCTGACCATCAAGTGCAGCTTTCAC
ACCCTCATATAACTACTTAAAGAAAATATAGAAAAATGGAAATTAGTTTT
GCAATTTAGGGGACTGCCGAACTGCCACCGTTTCCACCTGACGCTGCGCC
ATCATATCAGGCTCTAAAAATCAACACACCATGTTCAAACACACGACTAG
CATACAGGAGCAGGAGCTACAGTAAATTTGAACCTTGTATTCGCATGTTC
GCCAATGTTCATAGTGTATTCTTCAAGCTCATTTTCTAACCAAGTTACCA
AGTTCAATATGATGAATAACTACAAGATTAGCAAACAAATACAAGTAGCA
TATGCGTTATTATATAACATCGAGTACTATATACATTACATGAAATACAA
AATGCAAGAAAAATTACTTTTAAACAAAATTTATGTTGAATAAAAAACAG
TATTTCCAAAAACTAAAAAAAAAAAAAAAAAA

GH03683.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
Vha26-RA 2310 Vha26-RA 70..2279 8..2217 11050 100 Plus
Vha26.a 2589 Vha26.a 172..2277 112..2217 10530 100 Plus
Vha26-RB 2312 Vha26-RB 172..2277 112..2217 10530 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1418904..1420358 760..2214 7275 100 Plus
chr3R 27901430 chr3R 1418512..1418847 429..764 1665 99.7 Plus
chr3R 27901430 chr3R 1418224..1418443 219..438 1100 100 Plus
chr3R 27901430 chr3R 1417484..1417697 8..221 1070 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:30:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5593245..5594702 760..2217 7290 100 Plus
3R 32079331 3R 5592853..5593188 429..764 1665 99.7 Plus
3R 32079331 3R 5592565..5592784 219..438 1100 100 Plus
3R 32079331 3R 5591825..5592038 8..221 1070 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5334076..5335533 760..2217 7290 100 Plus
3R 31820162 3R 5333684..5334019 429..764 1665 99.7 Plus
3R 31820162 3R 5333396..5333615 219..438 1100 100 Plus
3R 31820162 3R 5332656..5332869 8..221 1070 100 Plus
Blast to na_te.dros performed on 2019-03-16 12:50:33 has no hits.

GH03683.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:51:25 Download gff for GH03683.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1417476..1417697 1..221 98 -> Plus
chr3R 1418227..1418439 222..434 100 -> Plus
chr3R 1418518..1418844 435..761 100 -> Plus
chr3R 1418906..1420358 762..2214 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:11:14 Download gff for GH03683.complete
Subject Subject Range Query Range Percent Splice Strand
Vha26-RB 1..681 189..869 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:33:40 Download gff for GH03683.complete
Subject Subject Range Query Range Percent Splice Strand
Vha26-RB 1..681 189..869 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:10:33 Download gff for GH03683.complete
Subject Subject Range Query Range Percent Splice Strand
Vha26-RA 1..681 189..869 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:08:11 Download gff for GH03683.complete
Subject Subject Range Query Range Percent Splice Strand
Vha26-RB 1..681 189..869 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:09:15 Download gff for GH03683.complete
Subject Subject Range Query Range Percent Splice Strand
Vha26-RA 1..681 189..869 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:35:52 Download gff for GH03683.complete
Subject Subject Range Query Range Percent Splice Strand
Vha26-RA 54..2268 1..2214 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:33:40 Download gff for GH03683.complete
Subject Subject Range Query Range Percent Splice Strand
Vha26-RA 54..2268 1..2214 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:10:33 Download gff for GH03683.complete
Subject Subject Range Query Range Percent Splice Strand
Vha26-RA 55..2269 1..2214 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:08:11 Download gff for GH03683.complete
Subject Subject Range Query Range Percent Splice Strand
Vha26-RA 54..2268 1..2214 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:15 Download gff for GH03683.complete
Subject Subject Range Query Range Percent Splice Strand
Vha26-RA 55..2269 1..2214 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:51:25 Download gff for GH03683.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5591817..5592038 1..221 98 -> Plus
3R 5592568..5592780 222..434 100 -> Plus
3R 5592859..5593185 435..761 100 -> Plus
3R 5593247..5594699 762..2214 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:51:25 Download gff for GH03683.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5591817..5592038 1..221 98 -> Plus
3R 5592568..5592780 222..434 100 -> Plus
3R 5592859..5593185 435..761 100 -> Plus
3R 5593247..5594699 762..2214 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:51:25 Download gff for GH03683.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5591817..5592038 1..221 98 -> Plus
3R 5592568..5592780 222..434 100 -> Plus
3R 5592859..5593185 435..761 100 -> Plus
3R 5593247..5594699 762..2214 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:10:33 Download gff for GH03683.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1417539..1417760 1..221 98 -> Plus
arm_3R 1418290..1418502 222..434 100 -> Plus
arm_3R 1418581..1418907 435..761 100 -> Plus
arm_3R 1418969..1420421 762..2214 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:45:44 Download gff for GH03683.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5332648..5332869 1..221 98 -> Plus
3R 5333399..5333611 222..434 100 -> Plus
3R 5333690..5334016 435..761 100 -> Plus
3R 5334078..5335530 762..2214 100   Plus

GH03683.hyp Sequence

Translation from 188 to 868

> GH03683.hyp
MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQR
LKIMEYYEKKEKQVELQKKIQSSNMLNQARLKVLKVREDHVSSVLDDARK
RLGEVTKNQSEYETVLTKLIVQGLFQIMEPKVILRCREVDVPLVRNVLPA
AVEQYKAQINQNVELFIDEKDFLSADTCGGVELLALNGRIKVPNTLESRL
DLISQQLVPEIRNALFGRNVNRKFTD*

GH03683.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
Vha26-PC 226 CG1088-PC 1..226 1..226 1117 100 Plus
Vha26-PB 226 CG1088-PB 1..226 1..226 1117 100 Plus
Vha26-PA 226 CG1088-PA 1..226 1..226 1117 100 Plus

GH03683.pep Sequence

Translation from 188 to 868

> GH03683.pep
MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQR
LKIMEYYEKKEKQVELQKKIQSSNMLNQARLKVLKVREDHVSSVLDDARK
RLGEVTKNQSEYETVLTKLIVQGLFQIMEPKVILRCREVDVPLVRNVLPA
AVEQYKAQINQNVELFIDEKDFLSADTCGGVELLALNGRIKVPNTLESRL
DLISQQLVPEIRNALFGRNVNRKFTD*

GH03683.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20699-PA 226 GF20699-PA 1..226 1..226 1122 95.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12936-PA 226 GG12936-PA 1..226 1..226 1122 95.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14669-PA 226 GH14669-PA 1..226 1..226 1070 90.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Vha26-PC 226 CG1088-PC 1..226 1..226 1117 100 Plus
Vha26-PA 226 CG1088-PA 1..226 1..226 1117 100 Plus
Vha26-PB 226 CG1088-PB 1..226 1..226 1117 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23674-PA 226 GI23674-PA 1..226 1..226 1085 91.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21540-PA 226 GL21540-PA 1..226 1..226 1079 91.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10614-PA 226 GA10614-PA 1..226 1..226 1079 91.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10818-PA 226 GM10818-PA 1..226 1..226 1162 99.6 Plus
Dsec\GM11995-PA 103 GM11995-PA 1..83 1..83 411 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19797-PA 226 GD19797-PA 1..226 1..226 1162 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23234-PA 226 GJ23234-PA 1..226 1..226 1075 89.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22511-PA 226 GK22511-PA 1..226 1..226 1095 93.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10141-PA 226 GE10141-PA 1..226 1..226 1139 97.3 Plus