Clone GH03795 Report

Search the DGRC for GH03795

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:37
Well:95
Vector:pOT2
Associated Gene/TranscriptCG18178-RA
Protein status:GH03795.pep: gold
Preliminary Size:1300
Sequenced Size:1328

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18178 2001-01-01 Release 2 assignment
CG18178 2002-07-13 Blastp of sequenced clone
CG18178 2003-01-01 Sim4 clustering to Release 3
CG18178 2008-04-29 Release 5.5 accounting
CG18178 2008-08-15 Release 5.9 accounting
CG18178 2008-12-18 5.12 accounting

Clone Sequence Records

GH03795.complete Sequence

1328 bp (1328 high quality bases) assembled on 2002-07-13

GenBank Submission: BT001385

> GH03795.complete
CTAATATATACACTTTCGGTTAGATTTTGTTTTTTGTTAAGATCTGGTCA
CACCGCCGTTTACACGTGCAAGTTGAATTCGAAAAGAAAACATTTTAATT
TTCCGGTAAAACATGAAGAAAAAGCAGGTGGAAAGTGCATCCGAGGAGGA
GGAAGTGCAGTCCGAAAACTCCGAGGCTTCCGACGAGGAGGAGCTACAGG
CAGAGGACTCCGACGAGGACCAGCTGCAGGCGGACGACTCCGAAGACGAA
GATTCCGATGGATCCGAACTGGATCTGGACGCCAGTGACACCGAATCCGA
TGAAGATGATGGTGAGGAGGAAGATACAATCAAACCGCAGCCCAAAAGCC
GTGCCGAGATTATCGACGAGAAGATCCACACCAAGTACGAGCAGTTAAAG
GGCACCCGGCTGTATGTCCGGTTTCCCCAAAAACTGCCCCTGGACTTGGA
TGAATTCAATGCCAAGGTGAAGGCTCTGCATCCACTGGTTCTGAAGTCCA
CAAAGCCTCGCCAGAAGCATGCACGTTTCTGCCTCGTCGATTTCAAGTCG
AAGGAAGATCGCGATCAAGCCTTTAAGGATATCAAGGCTTCGATCGAAAA
GGATGACAAGCACAAGGGCTTATTCGTATCACTGCCTAAGACGGATTCCG
ATGATTTTGTCAACGAGCTGGTGACCCGCAAGCAGACATCCATCGTAAAC
AAACGTACCAAGGCCCTGATGAAGCGTGCTACTAAGAAGGTCCTCACCAA
GGGTAACTTCACCTCGTCCGTGGTCATTACCAATCTGCCAAAGACCAGTT
CGTTGCCCCAGGTGCGCCAGCTGTTCCACGACCAGGCAGTGGACATTCAA
ATACGACCGGGCAAGGGTAAATTCCGGGACTACAGCACGGCGACCGTAAC
CCTGCCAACGACCCACGATGCACGCAAGGCCATCAAGGAGAAGCTCAGCC
TGGCTGGCACGCCACTTATATTGCGCTTCAACACTCAGAACAAGCGGAGC
TCTAAAAATAAGCTCAAGCGAAAGGCCGAGAAAGGGAAATCCCCAGAGAA
GAATCCACTGAGTACGAAACAAAACGATAAGAAGTCCAAGTCGGAAAAAG
GAGAAGCACCTAAAATTAAGAAACCAGAAGTAAATACTAAGCACCAGCCG
AAGGAAAACCTTAAGAGAAAGTCGCCCAAGGAGAAAACACCTAATATTAA
GACACCCAAGAAGTTAAAGAAACTAACCGCAGAATAGAGTGTAGTTAATG
TTTGATAATTTAAATAAAATTCCCCCCTTTTGATTGACCATTAATTAGGT
GTAAAAAACCAAAAAAAAAAAAAAAAAA

GH03795.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG18178-RA 1310 CG18178-RA 1..1310 1..1310 6550 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9709637..9710922 1310..25 6415 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:30:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9717784..9719071 1312..25 6425 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9710884..9712171 1312..25 6425 99.9 Minus
3L 28103327 3L 9712216..9712244 29..1 145 100 Minus
Blast to na_te.dros performed 2019-03-16 06:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 4696..4779 1054..1139 119 63.2 Plus

GH03795.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:38:34 Download gff for GH03795.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9709637..9710917 30..1310 100 <- Minus
chr3L 9710967..9710985 11..29 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:11:36 Download gff for GH03795.complete
Subject Subject Range Query Range Percent Splice Strand
CG18178-RA 1..1125 113..1237 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:17:34 Download gff for GH03795.complete
Subject Subject Range Query Range Percent Splice Strand
CG18178-RA 1..1125 113..1237 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:40:17 Download gff for GH03795.complete
Subject Subject Range Query Range Percent Splice Strand
CG18178-RA 1..1125 113..1237 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:08:45 Download gff for GH03795.complete
Subject Subject Range Query Range Percent Splice Strand
CG18178-RA 1..1125 113..1237 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:18:08 Download gff for GH03795.complete
Subject Subject Range Query Range Percent Splice Strand
CG18178-RA 1..1125 113..1237 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:42:01 Download gff for GH03795.complete
Subject Subject Range Query Range Percent Splice Strand
CG18178-RA 1..1281 30..1310 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:17:34 Download gff for GH03795.complete
Subject Subject Range Query Range Percent Splice Strand
CG18178-RA 1..1310 1..1310 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:17 Download gff for GH03795.complete
Subject Subject Range Query Range Percent Splice Strand
CG18178-RA 1..1310 1..1310 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:08:45 Download gff for GH03795.complete
Subject Subject Range Query Range Percent Splice Strand
CG18178-RA 1..1307 4..1310 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:18:08 Download gff for GH03795.complete
Subject Subject Range Query Range Percent Splice Strand
CG18178-RA 1..1310 1..1310 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:38:34 Download gff for GH03795.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9717786..9719066 30..1310 100 <- Minus
3L 9719116..9719144 1..29 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:38:34 Download gff for GH03795.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9717786..9719066 30..1310 100 <- Minus
3L 9719116..9719144 1..29 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:38:34 Download gff for GH03795.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9717786..9719066 30..1310 100 <- Minus
3L 9719116..9719144 1..29 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:17 Download gff for GH03795.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9710886..9712166 30..1310 100 <- Minus
arm_3L 9712216..9712244 1..29 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:40:44 Download gff for GH03795.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9710886..9712166 30..1310 100 <- Minus
3L 9712216..9712244 1..29 100   Minus

GH03795.hyp Sequence

Translation from 112 to 1236

> GH03795.hyp
MKKKQVESASEEEEVQSENSEASDEEELQAEDSDEDQLQADDSEDEDSDG
SELDLDASDTESDEDDGEEEDTIKPQPKSRAEIIDEKIHTKYEQLKGTRL
YVRFPQKLPLDLDEFNAKVKALHPLVLKSTKPRQKHARFCLVDFKSKEDR
DQAFKDIKASIEKDDKHKGLFVSLPKTDSDDFVNELVTRKQTSIVNKRTK
ALMKRATKKVLTKGNFTSSVVITNLPKTSSLPQVRQLFHDQAVDIQIRPG
KGKFRDYSTATVTLPTTHDARKAIKEKLSLAGTPLILRFNTQNKRSSKNK
LKRKAEKGKSPEKNPLSTKQNDKKSKSEKGEAPKIKKPEVNTKHQPKENL
KRKSPKEKTPNIKTPKKLKKLTAE*

GH03795.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG18178-PB 374 CG18178-PB 1..374 1..374 1895 100 Plus
CG18178-PA 374 CG18178-PA 1..374 1..374 1895 100 Plus

GH03795.pep Sequence

Translation from 112 to 1236

> GH03795.pep
MKKKQVESASEEEEVQSENSEASDEEELQAEDSDEDQLQADDSEDEDSDG
SELDLDASDTESDEDDGEEEDTIKPQPKSRAEIIDEKIHTKYEQLKGTRL
YVRFPQKLPLDLDEFNAKVKALHPLVLKSTKPRQKHARFCLVDFKSKEDR
DQAFKDIKASIEKDDKHKGLFVSLPKTDSDDFVNELVTRKQTSIVNKRTK
ALMKRATKKVLTKGNFTSSVVITNLPKTSSLPQVRQLFHDQAVDIQIRPG
KGKFRDYSTATVTLPTTHDARKAIKEKLSLAGTPLILRFNTQNKRSSKNK
LKRKAEKGKSPEKNPLSTKQNDKKSKSEKGEAPKIKKPEVNTKHQPKENL
KRKSPKEKTPNIKTPKKLKKLTAE*

GH03795.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25131-PA 370 GF25131-PA 1..370 1..374 1071 64.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14013-PA 376 GG14013-PA 28..376 15..374 1443 84.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15944-PA 312 GH15944-PA 22..291 45..305 852 65.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG18178-PB 374 CG18178-PB 1..374 1..374 1895 100 Plus
CG18178-PA 374 CG18178-PA 1..374 1..374 1895 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16595-PA 299 GI16595-PA 17..284 40..312 894 65 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17875-PA 305 GL17875-PA 1..293 1..311 847 63.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14827-PA 305 GA14827-PA 1..293 1..311 847 63.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24847-PA 374 GM24847-PA 28..362 28..362 1505 91.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12899-PA 374 GD12899-PA 1..362 1..362 1583 92.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12847-PA 306 GJ12847-PA 10..291 33..311 861 64.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13495-PA 371 GK13495-PA 117..334 74..289 740 65.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21215-PA 385 GE21215-PA 1..385 1..374 1428 83.2 Plus