Clone GH03958 Report

Search the DGRC for GH03958

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:39
Well:58
Vector:pOT2
Associated Gene/TranscriptninaB-RA
Protein status:GH03958.pep: gold
Preliminary Size:2279
Sequenced Size:2178

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9347 2001-01-01 Release 2 assignment
CG9347 2002-06-10 Blastp of sequenced clone
CG9347 2003-01-01 Sim4 clustering to Release 3
ninaB 2008-04-29 Release 5.5 accounting
ninaB 2008-08-15 Release 5.9 accounting
ninaB 2008-12-18 5.12 accounting

Clone Sequence Records

GH03958.complete Sequence

2178 bp (2178 high quality bases) assembled on 2002-06-10

GenBank Submission: AY121617

> GH03958.complete
AAACGGACCGACCACGTGAAATTCGGTTCTTTCGGTTTCGGAATATTGCA
TCATACATAGCTTGGACTAGCCAAGGAGATACCACTAACTCACCCTTGGA
TTATCCACGCAATGGCAGCCGGTGTCTTCAAGAGTTTTATGCGCGACTTC
TTTGCGGTGAAATACGATGAGCAGCGAAATGATCCGCAAGCGGAACGACT
GGATGGCAACGGACGACTGTATCCCAACTGCTCGTCGGATGTGTGGCTGC
GATCCTGCGAGCGGGAGATAGTTGATCCCATTGAGGGCCATCACAGCGGG
CACATTCCCAAATGGATATGCGGTAGTCTGTTGCGCAATGGACCCGGCAG
CTGGAAGGTGGGCGACATGACCTTCGGCCATCTGTTCGACTGCTCCGCCC
TGCTGCACCGATTTGCCATTCGGAATGGACGCGTCACCTACCAGAATCGC
TTCGTGGACACGGAAACACTGCGAAAGAATCGCTCTGCCCAGCGGATTGT
GGTCACGGAGTTTGGCACAGCTGCTGTTCCGGATCCCTGTCACTCGATCT
TCGATAGATTTGCGGCCATTTTTCGACCGGATAGTGGAACGGATAACTCG
ATGATTTCCATATATCCTTTCGGGGATCAGTATTACACATTTACGGAGAC
GCCTTTTATGCATAGAATAAATCCCTGCACTTTGGCCACCGAAGCACGAA
TCTGCACCACCGACTTCGTGGGCGTGGTGAACCACACATCGCATCCGCAT
GTTCTTCCCAGTGGCACTGTCTACAACCTGGGCACCACAATGACCAGATC
TGGACCGGCATACACTATACTCAGTTTCCCGCACGGCGAGCAGATGTTCG
AGGATGCTCATGTGGTGGCCACACTGCCGTGCCGCTGGAAACTGCATCCC
GGTTATATGCACACCTTCGGCTTAACGGATCACTACTTTGTGATTGTGGA
GCAGCCGTTGTCCGTTTCGCTTACGGAGTATATCAAAGCCCAGCTAGGTG
GACAGAATTTATCGGCGTGTCTCAAGTGGTTCGAGGATCGACCGACACTA
TTTCACCTTATAGATCGGGTTTCCGGCAAACTGGTGCAGACCTACGAATC
GGAAGCCTTCTTCTACCTGCACATCATCAACTGCTTTGAACGGGATGGCC
ACGTGGTGGTGGACATTTGCAGCTACAGGAATCCCGAGATGATCAACTGC
ATGTATCTGGAGGCCATTGCCAATATGCAAACGAATCCCAATTATGCTAC
CCTCTTTCGTGGACGTCCCTTGAGATTCGTCCTGCCCTTGGGCACAATTC
CTCCGGCAAGCATCGCCAAGCGGGGACTGGTCAAGTCCTTCTCCCTTGCT
GGACTAAGTGCTCCGCAGGTTTCTCGCACCATGAAGCACTCGGTCTCGCA
ATATGCGGATATAACCTACATGCCCACCAATGGAAAGCAAGCCACTGCTG
GAGAGGAAAGCCCCAAGCGAGATGCCAAACGTGGCCGCTATGAGGAGGAG
AATCTTGTCAATCTGGTTACCATGGAGGGCAGTCAAGCGGAGGCGTTTCA
GGGCACCAATGGCATCCAACTGCGTCCGGAAATGCTGTGTGATTGGGGCT
GTGAAACACCTAGGATCTATTATGAACGGTATATGGGCAAGAACTACCGA
TACTTCTACGCGATTAGCTCCGATGTGGATGCAGTGAATCCGGGCACCCT
CATCAAGGTGGATGTGTGGAATAAGAGCTGTCTAACCTGGTGCGAGGAGA
ATGTCTATCCCAGTGAGCCCATTTTTGTGCCTTCGCCGGATCCGAAATCC
GAGGACGATGGCGTTATCCTGGCCTCCATGGTGCTGGGCGGTCTCAACGA
TCGCTATGTGGGCCTAATTGTGCTATGTGCCAAAACGATGACCGAGCTGG
GCCGTTGTGATTTCCATACCAATGGACCCGTGCCCAAGTGTCTCCATGGA
TGGTTTGCACCCAATGCCATTTAGATACGGAACTCCTTATATGGGAAGAC
TACTTAGCTTAGGAGATAGGGTAAAGCATCTGCCCAGTATTACGTTTAGA
TTTAGACTAGATTTAGACTAGCATTTAATCTTAGAACTTAGAATTTTGGA
TTCAAGACATTCGCAATAAACTCCTGCCACTTGCGCTGGAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH03958.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
ninaB-RA 2164 ninaB-RA 26..2164 1..2139 10695 100 Plus
Adgf-D.a 1602 Adgf-D.a 1503..1602 2141..2042 500 100 Minus
Adgf-D-RA 1844 Adgf-D-RA 1745..1844 2141..2042 500 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9526525..9527560 663..1698 5000 98.8 Plus
chr3R 27901430 chr3R 9525961..9526470 156..665 2535 99.8 Plus
chr3R 27901430 chr3R 9527617..9528057 1699..2139 2205 100 Plus
chr3R 27901430 chr3R 9525483..9525640 1..158 745 98.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:30:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13701632..13702667 663..1698 5180 100 Plus
3R 32079331 3R 13701068..13701577 156..665 2550 100 Plus
3R 32079331 3R 13702724..13703166 1699..2141 2215 100 Plus
3R 32079331 3R 13700590..13700747 1..158 790 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 13442463..13443498 663..1698 5180 100 Plus
3R 31820162 3R 13441899..13442408 156..665 2550 100 Plus
3R 31820162 3R 13443555..13443997 1699..2141 2215 100 Plus
3R 31820162 3R 13441421..13441578 1..158 790 100 Plus
Blast to na_te.dros performed on 2019-03-16 13:06:28 has no hits.

GH03958.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:07:35 Download gff for GH03958.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9525483..9525638 1..156 98 -> Plus
chr3R 9525962..9526470 157..665 99 -> Plus
chr3R 9526528..9527560 666..1698 98 -> Plus
chr3R 9527617..9528057 1699..2139 92   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:12:01 Download gff for GH03958.complete
Subject Subject Range Query Range Percent Splice Strand
ninaB-RA 1..1863 112..1974 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:39:24 Download gff for GH03958.complete
Subject Subject Range Query Range Percent Splice Strand
ninaB-RA 1..1863 112..1974 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:15:44 Download gff for GH03958.complete
Subject Subject Range Query Range Percent Splice Strand
ninaB-RA 1..1863 112..1974 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:16:26 Download gff for GH03958.complete
Subject Subject Range Query Range Percent Splice Strand
ninaB-RA 1..1863 112..1974 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:14:02 Download gff for GH03958.complete
Subject Subject Range Query Range Percent Splice Strand
ninaB-RA 1..1863 112..1974 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:44:13 Download gff for GH03958.complete
Subject Subject Range Query Range Percent Splice Strand
ninaB-RA 5..2101 1..2097 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:39:24 Download gff for GH03958.complete
Subject Subject Range Query Range Percent Splice Strand
ninaB-RA 5..2101 1..2097 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:15:44 Download gff for GH03958.complete
Subject Subject Range Query Range Percent Splice Strand
ninaB-RA 26..2164 1..2139 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:16:26 Download gff for GH03958.complete
Subject Subject Range Query Range Percent Splice Strand
ninaB-RA 5..2101 1..2097 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:02 Download gff for GH03958.complete
Subject Subject Range Query Range Percent Splice Strand
ninaB-RA 26..2164 1..2139 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:07:35 Download gff for GH03958.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13700590..13700745 1..156 100 -> Plus
3R 13701069..13701577 157..665 100 -> Plus
3R 13701635..13702667 666..1698 100 -> Plus
3R 13702724..13703164 1699..2139 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:07:35 Download gff for GH03958.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13700590..13700745 1..156 100 -> Plus
3R 13701069..13701577 157..665 100 -> Plus
3R 13701635..13702667 666..1698 100 -> Plus
3R 13702724..13703164 1699..2139 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:07:35 Download gff for GH03958.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13700590..13700745 1..156 100 -> Plus
3R 13701069..13701577 157..665 100 -> Plus
3R 13701635..13702667 666..1698 100 -> Plus
3R 13702724..13703164 1699..2139 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:15:44 Download gff for GH03958.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9526312..9526467 1..156 100 -> Plus
arm_3R 9526791..9527299 157..665 100 -> Plus
arm_3R 9527357..9528389 666..1698 100 -> Plus
arm_3R 9528446..9528886 1699..2139 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:52:16 Download gff for GH03958.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13441900..13442408 157..665 100 -> Plus
3R 13442466..13443498 666..1698 100 -> Plus
3R 13443555..13443995 1699..2139 100   Plus
3R 13441421..13441576 1..156 100 -> Plus

GH03958.pep Sequence

Translation from 111 to 1973

> GH03958.pep
MAAGVFKSFMRDFFAVKYDEQRNDPQAERLDGNGRLYPNCSSDVWLRSCE
REIVDPIEGHHSGHIPKWICGSLLRNGPGSWKVGDMTFGHLFDCSALLHR
FAIRNGRVTYQNRFVDTETLRKNRSAQRIVVTEFGTAAVPDPCHSIFDRF
AAIFRPDSGTDNSMISIYPFGDQYYTFTETPFMHRINPCTLATEARICTT
DFVGVVNHTSHPHVLPSGTVYNLGTTMTRSGPAYTILSFPHGEQMFEDAH
VVATLPCRWKLHPGYMHTFGLTDHYFVIVEQPLSVSLTEYIKAQLGGQNL
SACLKWFEDRPTLFHLIDRVSGKLVQTYESEAFFYLHIINCFERDGHVVV
DICSYRNPEMINCMYLEAIANMQTNPNYATLFRGRPLRFVLPLGTIPPAS
IAKRGLVKSFSLAGLSAPQVSRTMKHSVSQYADITYMPTNGKQATAGEES
PKRDAKRGRYEEENLVNLVTMEGSQAEAFQGTNGIQLRPEMLCDWGCETP
RIYYERYMGKNYRYFYAISSDVDAVNPGTLIKVDVWNKSCLTWCEENVYP
SEPIFVPSPDPKSEDDGVILASMVLGGLNDRYVGLIVLCAKTMTELGRCD
FHTNGPVPKCLHGWFAPNAI*

GH03958.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16875-PA 623 GF16875-PA 1..623 1..620 3072 89.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19789-PA 620 GG19789-PA 1..620 1..620 3254 96 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14266-PA 609 GH14266-PA 1..609 1..620 2789 81.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
ninaB-PA 620 CG9347-PA 1..620 1..620 3367 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23158-PA 615 GI23158-PA 1..615 1..620 2818 82.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23083-PA 626 GL23083-PA 1..625 1..619 2890 83.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21719-PA 626 GA21719-PA 1..625 1..619 2880 83.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24124-PA 620 GM24124-PA 1..620 1..620 3295 97.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18923-PA 620 GD18923-PA 1..620 1..620 3300 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14471-PA 608 GJ14471-PA 1..608 1..620 2736 79.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14193-PA 614 GK14193-PA 1..611 1..617 2821 83 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26290-PA 620 GE26290-PA 1..620 1..620 3255 96.1 Plus

GH03958.hyp Sequence

Translation from 111 to 1973

> GH03958.hyp
MAAGVFKSFMRDFFAVKYDEQRNDPQAERLDGNGRLYPNCSSDVWLRSCE
REIVDPIEGHHSGHIPKWICGSLLRNGPGSWKVGDMTFGHLFDCSALLHR
FAIRNGRVTYQNRFVDTETLRKNRSAQRIVVTEFGTAAVPDPCHSIFDRF
AAIFRPDSGTDNSMISIYPFGDQYYTFTETPFMHRINPCTLATEARICTT
DFVGVVNHTSHPHVLPSGTVYNLGTTMTRSGPAYTILSFPHGEQMFEDAH
VVATLPCRWKLHPGYMHTFGLTDHYFVIVEQPLSVSLTEYIKAQLGGQNL
SACLKWFEDRPTLFHLIDRVSGKLVQTYESEAFFYLHIINCFERDGHVVV
DICSYRNPEMINCMYLEAIANMQTNPNYATLFRGRPLRFVLPLGTIPPAS
IAKRGLVKSFSLAGLSAPQVSRTMKHSVSQYADITYMPTNGKQATAGEES
PKRDAKRGRYEEENLVNLVTMEGSQAEAFQGTNGIQLRPEMLCDWGCETP
RIYYERYMGKNYRYFYAISSDVDAVNPGTLIKVDVWNKSCLTWCEENVYP
SEPIFVPSPDPKSEDDGVILASMVLGGLNDRYVGLIVLCAKTMTELGRCD
FHTNGPVPKCLHGWFAPNAI*

GH03958.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
ninaB-PA 620 CG9347-PA 1..620 1..620 3367 100 Plus