BDGP Sequence Production Resources |
Search the DGRC for GH03958
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 39 |
Well: | 58 |
Vector: | pOT2 |
Associated Gene/Transcript | ninaB-RA |
Protein status: | GH03958.pep: gold |
Preliminary Size: | 2279 |
Sequenced Size: | 2178 |
Gene | Date | Evidence |
---|---|---|
CG9347 | 2001-01-01 | Release 2 assignment |
CG9347 | 2002-06-10 | Blastp of sequenced clone |
CG9347 | 2003-01-01 | Sim4 clustering to Release 3 |
ninaB | 2008-04-29 | Release 5.5 accounting |
ninaB | 2008-08-15 | Release 5.9 accounting |
ninaB | 2008-12-18 | 5.12 accounting |
2178 bp (2178 high quality bases) assembled on 2002-06-10
GenBank Submission: AY121617
> GH03958.complete AAACGGACCGACCACGTGAAATTCGGTTCTTTCGGTTTCGGAATATTGCA TCATACATAGCTTGGACTAGCCAAGGAGATACCACTAACTCACCCTTGGA TTATCCACGCAATGGCAGCCGGTGTCTTCAAGAGTTTTATGCGCGACTTC TTTGCGGTGAAATACGATGAGCAGCGAAATGATCCGCAAGCGGAACGACT GGATGGCAACGGACGACTGTATCCCAACTGCTCGTCGGATGTGTGGCTGC GATCCTGCGAGCGGGAGATAGTTGATCCCATTGAGGGCCATCACAGCGGG CACATTCCCAAATGGATATGCGGTAGTCTGTTGCGCAATGGACCCGGCAG CTGGAAGGTGGGCGACATGACCTTCGGCCATCTGTTCGACTGCTCCGCCC TGCTGCACCGATTTGCCATTCGGAATGGACGCGTCACCTACCAGAATCGC TTCGTGGACACGGAAACACTGCGAAAGAATCGCTCTGCCCAGCGGATTGT GGTCACGGAGTTTGGCACAGCTGCTGTTCCGGATCCCTGTCACTCGATCT TCGATAGATTTGCGGCCATTTTTCGACCGGATAGTGGAACGGATAACTCG ATGATTTCCATATATCCTTTCGGGGATCAGTATTACACATTTACGGAGAC GCCTTTTATGCATAGAATAAATCCCTGCACTTTGGCCACCGAAGCACGAA TCTGCACCACCGACTTCGTGGGCGTGGTGAACCACACATCGCATCCGCAT GTTCTTCCCAGTGGCACTGTCTACAACCTGGGCACCACAATGACCAGATC TGGACCGGCATACACTATACTCAGTTTCCCGCACGGCGAGCAGATGTTCG AGGATGCTCATGTGGTGGCCACACTGCCGTGCCGCTGGAAACTGCATCCC GGTTATATGCACACCTTCGGCTTAACGGATCACTACTTTGTGATTGTGGA GCAGCCGTTGTCCGTTTCGCTTACGGAGTATATCAAAGCCCAGCTAGGTG GACAGAATTTATCGGCGTGTCTCAAGTGGTTCGAGGATCGACCGACACTA TTTCACCTTATAGATCGGGTTTCCGGCAAACTGGTGCAGACCTACGAATC GGAAGCCTTCTTCTACCTGCACATCATCAACTGCTTTGAACGGGATGGCC ACGTGGTGGTGGACATTTGCAGCTACAGGAATCCCGAGATGATCAACTGC ATGTATCTGGAGGCCATTGCCAATATGCAAACGAATCCCAATTATGCTAC CCTCTTTCGTGGACGTCCCTTGAGATTCGTCCTGCCCTTGGGCACAATTC CTCCGGCAAGCATCGCCAAGCGGGGACTGGTCAAGTCCTTCTCCCTTGCT GGACTAAGTGCTCCGCAGGTTTCTCGCACCATGAAGCACTCGGTCTCGCA ATATGCGGATATAACCTACATGCCCACCAATGGAAAGCAAGCCACTGCTG GAGAGGAAAGCCCCAAGCGAGATGCCAAACGTGGCCGCTATGAGGAGGAG AATCTTGTCAATCTGGTTACCATGGAGGGCAGTCAAGCGGAGGCGTTTCA GGGCACCAATGGCATCCAACTGCGTCCGGAAATGCTGTGTGATTGGGGCT GTGAAACACCTAGGATCTATTATGAACGGTATATGGGCAAGAACTACCGA TACTTCTACGCGATTAGCTCCGATGTGGATGCAGTGAATCCGGGCACCCT CATCAAGGTGGATGTGTGGAATAAGAGCTGTCTAACCTGGTGCGAGGAGA ATGTCTATCCCAGTGAGCCCATTTTTGTGCCTTCGCCGGATCCGAAATCC GAGGACGATGGCGTTATCCTGGCCTCCATGGTGCTGGGCGGTCTCAACGA TCGCTATGTGGGCCTAATTGTGCTATGTGCCAAAACGATGACCGAGCTGG GCCGTTGTGATTTCCATACCAATGGACCCGTGCCCAAGTGTCTCCATGGA TGGTTTGCACCCAATGCCATTTAGATACGGAACTCCTTATATGGGAAGAC TACTTAGCTTAGGAGATAGGGTAAAGCATCTGCCCAGTATTACGTTTAGA TTTAGACTAGATTTAGACTAGCATTTAATCTTAGAACTTAGAATTTTGGA TTCAAGACATTCGCAATAAACTCCTGCCACTTGCGCTGGAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 9526525..9527560 | 663..1698 | 5000 | 98.8 | Plus |
chr3R | 27901430 | chr3R | 9525961..9526470 | 156..665 | 2535 | 99.8 | Plus |
chr3R | 27901430 | chr3R | 9527617..9528057 | 1699..2139 | 2205 | 100 | Plus |
chr3R | 27901430 | chr3R | 9525483..9525640 | 1..158 | 745 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 13701632..13702667 | 663..1698 | 5180 | 100 | Plus |
3R | 32079331 | 3R | 13701068..13701577 | 156..665 | 2550 | 100 | Plus |
3R | 32079331 | 3R | 13702724..13703166 | 1699..2141 | 2215 | 100 | Plus |
3R | 32079331 | 3R | 13700590..13700747 | 1..158 | 790 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 13442463..13443498 | 663..1698 | 5180 | 100 | Plus |
3R | 31820162 | 3R | 13441899..13442408 | 156..665 | 2550 | 100 | Plus |
3R | 31820162 | 3R | 13443555..13443997 | 1699..2141 | 2215 | 100 | Plus |
3R | 31820162 | 3R | 13441421..13441578 | 1..158 | 790 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 9525483..9525638 | 1..156 | 98 | -> | Plus |
chr3R | 9525962..9526470 | 157..665 | 99 | -> | Plus |
chr3R | 9526528..9527560 | 666..1698 | 98 | -> | Plus |
chr3R | 9527617..9528057 | 1699..2139 | 92 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ninaB-RA | 1..1863 | 112..1974 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ninaB-RA | 1..1863 | 112..1974 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ninaB-RA | 1..1863 | 112..1974 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ninaB-RA | 1..1863 | 112..1974 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ninaB-RA | 1..1863 | 112..1974 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ninaB-RA | 5..2101 | 1..2097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ninaB-RA | 5..2101 | 1..2097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ninaB-RA | 26..2164 | 1..2139 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ninaB-RA | 5..2101 | 1..2097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ninaB-RA | 26..2164 | 1..2139 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13700590..13700745 | 1..156 | 100 | -> | Plus |
3R | 13701069..13701577 | 157..665 | 100 | -> | Plus |
3R | 13701635..13702667 | 666..1698 | 100 | -> | Plus |
3R | 13702724..13703164 | 1699..2139 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13700590..13700745 | 1..156 | 100 | -> | Plus |
3R | 13701069..13701577 | 157..665 | 100 | -> | Plus |
3R | 13701635..13702667 | 666..1698 | 100 | -> | Plus |
3R | 13702724..13703164 | 1699..2139 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13700590..13700745 | 1..156 | 100 | -> | Plus |
3R | 13701069..13701577 | 157..665 | 100 | -> | Plus |
3R | 13701635..13702667 | 666..1698 | 100 | -> | Plus |
3R | 13702724..13703164 | 1699..2139 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 9526312..9526467 | 1..156 | 100 | -> | Plus |
arm_3R | 9526791..9527299 | 157..665 | 100 | -> | Plus |
arm_3R | 9527357..9528389 | 666..1698 | 100 | -> | Plus |
arm_3R | 9528446..9528886 | 1699..2139 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13441900..13442408 | 157..665 | 100 | -> | Plus |
3R | 13442466..13443498 | 666..1698 | 100 | -> | Plus |
3R | 13443555..13443995 | 1699..2139 | 100 | Plus | |
3R | 13441421..13441576 | 1..156 | 100 | -> | Plus |
Translation from 111 to 1973
> GH03958.pep MAAGVFKSFMRDFFAVKYDEQRNDPQAERLDGNGRLYPNCSSDVWLRSCE REIVDPIEGHHSGHIPKWICGSLLRNGPGSWKVGDMTFGHLFDCSALLHR FAIRNGRVTYQNRFVDTETLRKNRSAQRIVVTEFGTAAVPDPCHSIFDRF AAIFRPDSGTDNSMISIYPFGDQYYTFTETPFMHRINPCTLATEARICTT DFVGVVNHTSHPHVLPSGTVYNLGTTMTRSGPAYTILSFPHGEQMFEDAH VVATLPCRWKLHPGYMHTFGLTDHYFVIVEQPLSVSLTEYIKAQLGGQNL SACLKWFEDRPTLFHLIDRVSGKLVQTYESEAFFYLHIINCFERDGHVVV DICSYRNPEMINCMYLEAIANMQTNPNYATLFRGRPLRFVLPLGTIPPAS IAKRGLVKSFSLAGLSAPQVSRTMKHSVSQYADITYMPTNGKQATAGEES PKRDAKRGRYEEENLVNLVTMEGSQAEAFQGTNGIQLRPEMLCDWGCETP RIYYERYMGKNYRYFYAISSDVDAVNPGTLIKVDVWNKSCLTWCEENVYP SEPIFVPSPDPKSEDDGVILASMVLGGLNDRYVGLIVLCAKTMTELGRCD FHTNGPVPKCLHGWFAPNAI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16875-PA | 623 | GF16875-PA | 1..623 | 1..620 | 3072 | 89.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19789-PA | 620 | GG19789-PA | 1..620 | 1..620 | 3254 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14266-PA | 609 | GH14266-PA | 1..609 | 1..620 | 2789 | 81.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ninaB-PA | 620 | CG9347-PA | 1..620 | 1..620 | 3367 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23158-PA | 615 | GI23158-PA | 1..615 | 1..620 | 2818 | 82.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23083-PA | 626 | GL23083-PA | 1..625 | 1..619 | 2890 | 83.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21719-PA | 626 | GA21719-PA | 1..625 | 1..619 | 2880 | 83.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24124-PA | 620 | GM24124-PA | 1..620 | 1..620 | 3295 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18923-PA | 620 | GD18923-PA | 1..620 | 1..620 | 3300 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14471-PA | 608 | GJ14471-PA | 1..608 | 1..620 | 2736 | 79.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14193-PA | 614 | GK14193-PA | 1..611 | 1..617 | 2821 | 83 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE26290-PA | 620 | GE26290-PA | 1..620 | 1..620 | 3255 | 96.1 | Plus |
Translation from 111 to 1973
> GH03958.hyp MAAGVFKSFMRDFFAVKYDEQRNDPQAERLDGNGRLYPNCSSDVWLRSCE REIVDPIEGHHSGHIPKWICGSLLRNGPGSWKVGDMTFGHLFDCSALLHR FAIRNGRVTYQNRFVDTETLRKNRSAQRIVVTEFGTAAVPDPCHSIFDRF AAIFRPDSGTDNSMISIYPFGDQYYTFTETPFMHRINPCTLATEARICTT DFVGVVNHTSHPHVLPSGTVYNLGTTMTRSGPAYTILSFPHGEQMFEDAH VVATLPCRWKLHPGYMHTFGLTDHYFVIVEQPLSVSLTEYIKAQLGGQNL SACLKWFEDRPTLFHLIDRVSGKLVQTYESEAFFYLHIINCFERDGHVVV DICSYRNPEMINCMYLEAIANMQTNPNYATLFRGRPLRFVLPLGTIPPAS IAKRGLVKSFSLAGLSAPQVSRTMKHSVSQYADITYMPTNGKQATAGEES PKRDAKRGRYEEENLVNLVTMEGSQAEAFQGTNGIQLRPEMLCDWGCETP RIYYERYMGKNYRYFYAISSDVDAVNPGTLIKVDVWNKSCLTWCEENVYP SEPIFVPSPDPKSEDDGVILASMVLGGLNDRYVGLIVLCAKTMTELGRCD FHTNGPVPKCLHGWFAPNAI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ninaB-PA | 620 | CG9347-PA | 1..620 | 1..620 | 3367 | 100 | Plus |