Clone GH04007 Report

Search the DGRC for GH04007

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:40
Well:7
Vector:pOT2
Associated Gene/TranscriptCG8818-RA
Protein status:GH04007.pep: gold
Preliminary Size:1705
Sequenced Size:1559

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8818 2001-01-01 Release 2 assignment
CG8818 2001-10-10 Blastp of sequenced clone
CG8818 2003-01-01 Sim4 clustering to Release 3
CG8818 2008-04-29 Release 5.5 accounting
CG8818 2008-08-15 Release 5.9 accounting
CG8818 2008-12-18 5.12 accounting

Clone Sequence Records

GH04007.complete Sequence

1559 bp (1559 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060613

> GH04007.complete
CGGTAACACTGTTGAAAACAAAAAATATACACAACTTATACAATCCGAGA
CAAAAACGGGGCAAAGGAGGCGTGTCTAGAAGAGCGGAGGACGCGGAGGT
GACCCCAAGTCATGGCCATGCTGACGCGATTGACCAGCAGCGGCACCACC
ACGGTGGCCGGAGCACCCGGTTCACCCAAGGGCCTGCAGCGTTTCCAAAA
CTACATCTCGGCCTTCTTGTGGCCGGGAACGCAGCGGCAACGTCGGAAGT
CCACACATCTCGATCCCATGGACTGTTTCACCAACGACTTGGTGACCAGA
AAGACCCAAAAGTGGGAGGAGCTGCGCGATAGCCTGATAAAGAGGCCATC
GTCCGGAAATCTGGAGGCGGACGCCAATTGCAATGTGGGAACGCAGCGAA
AGGCTGGTAGTACCAGCTTTAGCCAGAACGTGGGTCTTATGTCCAAGGGC
ATGATGAGTGATCTGAAGGCGCTGCGCTCCCCCCAACTGGGACTGGATAT
CAGATCCCTGTCGCAGGCGCAGCTGGACAACCTGCTGATGGCCACGTTGG
AGATCAAGAACAAGCTGGACTTTCTCTACCTGATACGTCAGTGCATCCGC
TGCAACCTGTTGCCCTCCAACGAGGTCTTCGTGTCCTGTCTAAAGTATTT
GAGCGCGCAGCGCAAGCTCCAGCAGTTGGAGGCACTGGCGGAGACCTGTC
GGCAGCTGGAGCACCCGTTCTCACAGACCTACGCGGATCTGGCGCCCTTC
CGCGCCATCGCCCTGTGGAACAATGGTAACGCCGACGTGGCCCTGATGAC
GCTACATCGCGGTTACGGGGTAAGCATGACTTCGGAGGAGGGCAGGCGGA
TGGCGCGCTCCGCATTCCGCACCATTTCCGAGGAGACTCTGGCCCAGAAG
AGTGAGGCGGTGCTAGTGTCGCTGCTGGAGGTAGCGCGTGCCATTCACCG
CGAGCACAAGGACATCTTTGTGGTGGCCTGTGTGTGGAAGCAATGCTTCG
CTAGCGATTGGTTTTGCGATCAAAAATCGGCTTCGGAACTGTTTGAGCAC
TACAAGGAGCTGCAAGAGCTAGTGGAGAGGAGAGCCAGTTCTTTGTGCTC
TTCATTTCTGGCCCGTAACAATGTTGATGCGGTGCATCGGCTAATCGAGG
CGTTCTTGCAGCACCAGCAGCGTTTGGCCTGCTCCAGCTGCCTCAGCTTG
CTCTTTAACTATCAATATATGCGCAAGGATCTGCGAGCCTGCGCTGAGAT
TGTCAAATCCTGCAGTGAATTAGAGATGCCGCTAAATGAGCTGCAGAACG
AACAGTTCCTCAGTCTGTTCCTCGACCAGAGCGATCCTGTGGACTCTTCG
GGAATGGCCAGCAAGTACAAGGCACCCAAGTCCTTCCAGTACAAGTTCTA
GTCCCCAGTTTCCATCGTTAAGCCGTTGTCATCGTAGTTACAGCACAAGT
GTTTGCACCATTGAGCAATATTGCAAGCATCCCCATATTGCAAGCCCCCA
CAAGGAATGTAGTGTCTCTTCAATAAATGTTATTTAATATCAAAAAAAAA
AAAAAAAAA

GH04007.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8818-RA 1718 CG8818-RA 92..1632 1..1541 7705 100 Plus
CG8818.a 1416 CG8818.a 1..1083 1..1083 5415 100 Plus
CG8818.a 1416 CG8818.a 1083..1407 1217..1541 1625 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8405160..8406247 1082..1 5285 99.3 Minus
chr2R 21145070 chr2R 8404587..8404911 1541..1217 1625 100 Minus
chr2R 21145070 chr2R 8404964..8405099 1216..1081 665 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:30:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12517837..12518918 1082..1 5410 100 Minus
2R 25286936 2R 12517264..12517588 1541..1217 1625 100 Minus
2R 25286936 2R 12517641..12517776 1216..1081 680 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12519036..12520117 1082..1 5410 100 Minus
2R 25260384 2R 12518463..12518787 1541..1217 1625 100 Minus
2R 25260384 2R 12518840..12518975 1216..1081 680 100 Minus
Blast to na_te.dros performed on 2019-03-16 07:13:50 has no hits.

GH04007.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:14:54 Download gff for GH04007.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8404587..8404911 1217..1541 100 <- Minus
chr2R 8404964..8405097 1083..1216 99 <- Minus
chr2R 8405160..8406247 1..1082 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:12:13 Download gff for GH04007.complete
Subject Subject Range Query Range Percent Splice Strand
CG8818-RA 1..1290 112..1401 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:55:40 Download gff for GH04007.complete
Subject Subject Range Query Range Percent Splice Strand
CG8818-RA 1..1290 112..1401 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:43:44 Download gff for GH04007.complete
Subject Subject Range Query Range Percent Splice Strand
CG8818-RA 1..1290 112..1401 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:24:48 Download gff for GH04007.complete
Subject Subject Range Query Range Percent Splice Strand
CG8818-RA 1..1290 112..1401 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:27:59 Download gff for GH04007.complete
Subject Subject Range Query Range Percent Splice Strand
CG8818-RA 1..1290 112..1401 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:41:29 Download gff for GH04007.complete
Subject Subject Range Query Range Percent Splice Strand
CG8818-RA 1..1541 1..1541 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:55:40 Download gff for GH04007.complete
Subject Subject Range Query Range Percent Splice Strand
CG8818-RA 1..1541 1..1541 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:44 Download gff for GH04007.complete
Subject Subject Range Query Range Percent Splice Strand
CG8818-RA 1..1535 7..1541 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:24:48 Download gff for GH04007.complete
Subject Subject Range Query Range Percent Splice Strand
CG8818-RA 1..1541 1..1541 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:27:59 Download gff for GH04007.complete
Subject Subject Range Query Range Percent Splice Strand
CG8818-RA 1..1535 7..1541 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:14:54 Download gff for GH04007.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12517264..12517588 1217..1541 100 <- Minus
2R 12517641..12517774 1083..1216 100 <- Minus
2R 12517837..12518918 1..1082 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:14:54 Download gff for GH04007.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12517264..12517588 1217..1541 100 <- Minus
2R 12517641..12517774 1083..1216 100 <- Minus
2R 12517837..12518918 1..1082 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:14:54 Download gff for GH04007.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12517264..12517588 1217..1541 100 <- Minus
2R 12517641..12517774 1083..1216 100 <- Minus
2R 12517837..12518918 1..1082 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:44 Download gff for GH04007.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8404769..8405093 1217..1541 100 <- Minus
arm_2R 8405146..8405279 1083..1216 100 <- Minus
arm_2R 8405342..8406423 1..1082 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:01:58 Download gff for GH04007.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12518463..12518787 1217..1541 100 <- Minus
2R 12518840..12518973 1083..1216 100 <- Minus
2R 12519036..12520117 1..1082 100   Minus

GH04007.hyp Sequence

Translation from 111 to 1400

> GH04007.hyp
MAMLTRLTSSGTTTVAGAPGSPKGLQRFQNYISAFLWPGTQRQRRKSTHL
DPMDCFTNDLVTRKTQKWEELRDSLIKRPSSGNLEADANCNVGTQRKAGS
TSFSQNVGLMSKGMMSDLKALRSPQLGLDIRSLSQAQLDNLLMATLEIKN
KLDFLYLIRQCIRCNLLPSNEVFVSCLKYLSAQRKLQQLEALAETCRQLE
HPFSQTYADLAPFRAIALWNNGNADVALMTLHRGYGVSMTSEEGRRMARS
AFRTISEETLAQKSEAVLVSLLEVARAIHREHKDIFVVACVWKQCFASDW
FCDQKSASELFEHYKELQELVERRASSLCSSFLARNNVDAVHRLIEAFLQ
HQQRLACSSCLSLLFNYQYMRKDLRACAEIVKSCSELEMPLNELQNEQFL
SLFLDQSDPVDSSGMASKYKAPKSFQYKF*

GH04007.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8818-PA 429 CG8818-PA 1..429 1..429 2204 100 Plus

GH04007.pep Sequence

Translation from 111 to 1400

> GH04007.pep
MAMLTRLTSSGTTTVAGAPGSPKGLQRFQNYISAFLWPGTQRQRRKSTHL
DPMDCFTNDLVTRKTQKWEELRDSLIKRPSSGNLEADANCNVGTQRKAGS
TSFSQNVGLMSKGMMSDLKALRSPQLGLDIRSLSQAQLDNLLMATLEIKN
KLDFLYLIRQCIRCNLLPSNEVFVSCLKYLSAQRKLQQLEALAETCRQLE
HPFSQTYADLAPFRAIALWNNGNADVALMTLHRGYGVSMTSEEGRRMARS
AFRTISEETLAQKSEAVLVSLLEVARAIHREHKDIFVVACVWKQCFASDW
FCDQKSASELFEHYKELQELVERRASSLCSSFLARNNVDAVHRLIEAFLQ
HQQRLACSSCLSLLFNYQYMRKDLRACAEIVKSCSELEMPLNELQNEQFL
SLFLDQSDPVDSSGMASKYKAPKSFQYKF*

GH04007.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12446-PA 432 GF12446-PA 1..432 1..429 2046 89.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22572-PA 431 GG22572-PA 1..431 1..429 2227 96.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20568-PA 426 GH20568-PA 1..426 1..429 1739 76.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8818-PA 429 CG8818-PA 1..429 1..429 2204 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19762-PA 419 GI19762-PA 1..419 1..429 1763 78.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10212-PA 440 GL10212-PA 1..440 1..429 2013 85.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21344-PA 440 GA21344-PA 1..440 1..429 2017 85.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20353-PA 431 GM20353-PA 1..431 1..429 2243 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25832-PA 183 GD25832-PA 1..183 247..429 957 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18206-PA 417 GJ18206-PA 1..417 1..429 1734 76.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19480-PA 428 GK19480-PA 1..428 1..429 1847 79.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13441-PA 431 GE13441-PA 1..431 1..429 2234 97 Plus