Clone GH04024 Report

Search the DGRC for GH04024

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:40
Well:24
Vector:pOT2
Associated Gene/TranscripteIF4E-3-RA
Protein status:GH04024.pep: gold
Preliminary Size:1300
Sequenced Size:998

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8023 2001-01-01 Release 2 assignment
CG8023 2002-06-13 Blastp of sequenced clone
CG8023 2003-01-01 Sim4 clustering to Release 3
eIF4E-3 2008-04-29 Release 5.5 accounting
eIF4E-3 2008-08-15 Release 5.9 accounting
eIF4E-3 2008-12-18 5.12 accounting

Clone Sequence Records

GH04024.complete Sequence

998 bp (998 high quality bases) assembled on 2002-06-13

GenBank Submission: AY122090

> GH04024.complete
ACGAGACATATACCATTTCAAGGAGTTTTTTTTAGTAAAATAAAACGAGA
AAACTAACAAAAAAAGGTTCGTTTATCGCATTGAATCAATAAAAAACAAT
GGTGTACACCGGTTACGTAAGCAACGGATTGCAGAATGCTGAGGAAACTG
CATGGGTGCCGTATGGAGATCCCAATGACTGGTCACATGGTCTGGCAGTT
TATGATGGTTTGGAACTGATGAGCGGCAATGAGGAGGAGTTGCAGCCCTC
ATTGAACCGGGTGATGAAAAACATCGACTACGACCTGGCCATGAAGCATC
CATTGGAGCATACCTGGACTTTGTGGCACTTGGAGAACGATCGTACCAAG
CGCTGGGCCGAAATGCTCGTCGATGTGACCAGCTTCAACACCGTTGAGGA
CTTCTTCAGTGTGTACTACTTTGTGAAGCCGCCATCGGATCTGAAGATAT
TCAATGACTACATGGTCTTCAAGAAAAATATTCGTCCCATGTGGGAGGAT
GACACCAATAAGAACGGTGGTCGTTGGATACTGCTCCTGGACAAGGCCTC
CAGGACCTATATAGATAAGATGTGGCACGATTTGCTTTTGTGCATGATTG
GCGAGTGCTTCCAGCACTCGGACGAGATATGTGGAGTGGTCATCAATGTG
CGCAACAAGGCTAATAAGCTATCCCTTTGGACGAAGGACTCTCGCAATGT
AGAGGCTATCCTGTCCATTGGCAGGCAGATAAAGGAGCTGCTGCATCTGG
GCATTATGGAAATCCAGTACCAGGTGCACAAGGATGCCATGGTGAACCAT
GGACCCAATGTCAATGCCATCTACACATTGTAGGCCAATTTCCAAGGGCG
CCATAGTACATTTCCAACGATAGTACATAAGCCTTATACATTTGTCAAAC
TCACATTTTATCCCACGCGCACCAATGCTTTTCGAGATAGATATCGGTTG
TACCATGAATAAAGTATTGCGTAGAGCAGTAAAAAAAAAAAAAAAAAA

GH04024.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-3-RA 1163 eIF4E-3-RA 80..1064 1..985 4910 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8222253..8222573 673..980 1375 96 Plus
chr3L 24539361 chr3L 8221483..8221742 150..409 1270 99.2 Plus
chr3L 24539361 chr3L 8221265..8221417 1..150 625 95.4 Plus
chr3L 24539361 chr3L 8221943..8222043 484..584 505 100 Plus
chr3L 24539361 chr3L 8222107..8222195 584..672 445 100 Plus
chr3L 24539361 chr3L 8221808..8221885 407..484 375 98.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:30:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:16:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8230261..8230573 673..985 1550 99.7 Plus
3L 28110227 3L 8229498..8229757 150..409 1300 100 Plus
3L 28110227 3L 8229284..8229433 1..150 750 100 Plus
3L 28110227 3L 8229952..8230052 484..584 505 100 Plus
3L 28110227 3L 8230115..8230203 584..672 445 100 Plus
3L 28110227 3L 8229821..8229898 407..484 390 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8223361..8223673 673..985 1550 99.6 Plus
3L 28103327 3L 8222598..8222857 150..409 1300 100 Plus
3L 28103327 3L 8222384..8222533 1..150 750 100 Plus
3L 28103327 3L 8223052..8223152 484..584 505 100 Plus
3L 28103327 3L 8223215..8223303 584..672 445 100 Plus
3L 28103327 3L 8222921..8222998 407..484 390 100 Plus
Blast to na_te.dros performed on 2019-03-16 07:16:04 has no hits.

GH04024.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:16:55 Download gff for GH04024.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8222427..8222573 834..980 100   Plus
chr3L 8222253..8222413 673..833 100 -> Plus
chr3L 8221265..8221417 1..150 95 -> Plus
chr3L 8221484..8221742 151..409 99 -> Plus
chr3L 8221811..8221885 410..484 98 -> Plus
chr3L 8221944..8222043 485..584 100 -> Plus
chr3L 8222108..8222195 585..672 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:12:17 Download gff for GH04024.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 1..735 99..833 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:18:55 Download gff for GH04024.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 1..735 99..833 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:07:03 Download gff for GH04024.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 1..735 99..833 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:10:01 Download gff for GH04024.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 1..735 99..833 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:29:05 Download gff for GH04024.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 1..735 99..833 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:44:03 Download gff for GH04024.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 52..1031 1..980 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:18:55 Download gff for GH04024.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 52..1031 1..980 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:03 Download gff for GH04024.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 61..1040 1..980 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:10:01 Download gff for GH04024.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 52..1031 1..980 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:29:05 Download gff for GH04024.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 61..1040 1..980 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:16:55 Download gff for GH04024.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8229284..8229433 1..150 100 -> Plus
3L 8229499..8229757 151..409 100 -> Plus
3L 8229824..8229898 410..484 100 -> Plus
3L 8229953..8230052 485..584 100 -> Plus
3L 8230116..8230203 585..672 100 -> Plus
3L 8230261..8230568 673..980 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:16:55 Download gff for GH04024.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8229284..8229433 1..150 100 -> Plus
3L 8229499..8229757 151..409 100 -> Plus
3L 8229824..8229898 410..484 100 -> Plus
3L 8229953..8230052 485..584 100 -> Plus
3L 8230116..8230203 585..672 100 -> Plus
3L 8230261..8230568 673..980 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:16:55 Download gff for GH04024.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8229284..8229433 1..150 100 -> Plus
3L 8229499..8229757 151..409 100 -> Plus
3L 8229824..8229898 410..484 100 -> Plus
3L 8229953..8230052 485..584 100 -> Plus
3L 8230116..8230203 585..672 100 -> Plus
3L 8230261..8230568 673..980 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:03 Download gff for GH04024.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8223216..8223303 585..672 100 -> Plus
arm_3L 8222384..8222533 1..150 100 -> Plus
arm_3L 8222599..8222857 151..409 100 -> Plus
arm_3L 8222924..8222998 410..484 100 -> Plus
arm_3L 8223053..8223152 485..584 100 -> Plus
arm_3L 8223361..8223668 673..980 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:42:12 Download gff for GH04024.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8222599..8222857 151..409 100 -> Plus
3L 8222924..8222998 410..484 100 -> Plus
3L 8223053..8223152 485..584 100 -> Plus
3L 8223216..8223303 585..672 100 -> Plus
3L 8223361..8223668 673..980 100   Plus
3L 8222384..8222533 1..150 100 -> Plus

GH04024.pep Sequence

Translation from 98 to 832

> GH04024.pep
MVYTGYVSNGLQNAEETAWVPYGDPNDWSHGLAVYDGLELMSGNEEELQP
SLNRVMKNIDYDLAMKHPLEHTWTLWHLENDRTKRWAEMLVDVTSFNTVE
DFFSVYYFVKPPSDLKIFNDYMVFKKNIRPMWEDDTNKNGGRWILLLDKA
SRTYIDKMWHDLLLCMIGECFQHSDEICGVVINVRNKANKLSLWTKDSRN
VEAILSIGRQIKELLHLGIMEIQYQVHKDAMVNHGPNVNAIYTL*

GH04024.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25106-PA 244 GF25106-PA 1..244 1..244 1016 73.8 Plus
Dana\GF23736-PA 261 GF23736-PA 81..261 65..244 605 56.4 Plus
Dana\GF10894-PA 230 GF10894-PA 39..230 52..244 575 51.8 Plus
Dana\GF22031-PA 458 GF22031-PA 280..458 67..244 552 53.1 Plus
Dana\GF10327-PA 271 GF10327-PA 74..271 44..244 539 48.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14292-PA 244 GG14292-PA 1..244 1..244 1158 88.1 Plus
Dere\GG14044-PA 250 GG14044-PA 70..250 65..244 593 56.4 Plus
Dere\GG15032-PA 229 GG15032-PA 47..229 62..244 560 51.4 Plus
Dere\GG14453-PA 231 GG14453-PA 35..231 44..244 547 48.8 Plus
Dere\GG12718-PA 448 GG12718-PA 270..448 67..244 544 52.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15498-PA 228 GH15498-PA 15..228 31..244 765 64 Plus
Dgri\GH16860-PA 275 GH16860-PA 95..275 65..244 589 55.8 Plus
Dgri\GH15637-PA 233 GH15637-PA 55..233 66..244 552 55.3 Plus
Dgri\GH14978-PA 232 GH14978-PA 49..232 61..244 521 47.3 Plus
Dgri\GH22616-PA 172 GH22616-PA 15..153 31..173 480 62.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E3-PA 244 CG8023-PA 1..244 1..244 1329 100 Plus
eIF4E1-PC 248 CG4035-PC 69..248 66..244 614 58.3 Plus
eIF4E1-PI 259 CG4035-PI 80..259 66..244 614 58.3 Plus
eIF4E1-PH 259 CG4035-PH 80..259 66..244 614 58.3 Plus
eIF4E1-PD 259 CG4035-PD 80..259 66..244 614 58.3 Plus
eIF4E1-PB 259 CG4035-PB 80..259 66..244 614 58.3 Plus
eIF4E1-PF 259 CG4035-PF 80..259 66..244 614 58.3 Plus
eIF4E1-PE 259 CG4035-PE 80..259 66..244 614 58.3 Plus
eIF4E1-PG 259 CG4035-PG 80..259 66..244 614 58.3 Plus
eIF4E1-PA 259 CG4035-PA 80..259 66..244 614 58.3 Plus
eIF4E5-PA 232 CG8277-PA 31..232 35..244 576 48.1 Plus
eIF4E4-PA 229 CG10124-PA 47..227 62..242 559 50.3 Plus
eIF4E7-PA 429 CG32859-PA 250..429 66..244 530 50.6 Plus
eIF4E6-PC 173 CG1442-PC 32..162 66..196 399 52.7 Plus
eIF4E6-PB 173 CG1442-PB 32..162 66..196 399 52.7 Plus
eIF4E6-PA 173 CG1442-PA 32..162 66..196 399 52.7 Plus
eIF4EHP-PA 223 CG33100-PA 48..220 69..236 249 29 Plus
eIF4EHP-PD 242 CG33100-PD 48..211 69..231 243 28.7 Plus
eIF4EHP-PC 186 CG33100-PC 48..164 69..185 201 33.3 Plus
eIF4EHP-PB 248 CG33100-PB 48..164 69..185 201 33.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12684-PA 246 GI12684-PA 65..246 63..244 567 53.8 Plus
Dmoj\GI13141-PA 238 GI13141-PA 55..238 61..244 538 49.5 Plus
Dmoj\GI14982-PA 311 GI14982-PA 133..310 67..243 483 48.3 Plus
Dmoj\GI16776-PA 198 GI16776-PA 56..162 31..129 386 67.3 Plus
Dmoj\GI13083-PA 125 GI13083-PA 43..125 163..244 245 53 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26506-PA 219 GL26506-PA 24..219 49..244 752 67.9 Plus
Dper\GL12850-PA 198 GL12850-PA 1..198 48..244 613 54 Plus
Dper\GL13241-PA 223 GL13241-PA 43..223 64..244 560 50.3 Plus
Dper\GL14400-PA 233 GL14400-PA 54..233 66..244 439 44.8 Plus
Dper\GL22541-PA 205 GL22541-PA 98..182 44..129 295 62.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24628-PA 234 GA24628-PA 1..234 1..244 770 59.8 Plus
Dpse\GA28966-PA 219 GA28966-PA 24..219 49..244 752 67.9 Plus
Dpse\GA28658-PA 263 GA28658-PA 83..263 65..244 601 56.9 Plus
Dpse\GA28599-PA 223 GA28599-PA 43..223 64..244 557 50.3 Plus
Dpse\GA28380-PA 227 GA28380-PA 49..227 66..244 518 48.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25034-PA 244 GM25034-PA 1..244 1..244 1244 93 Plus
Dsec\GM24878-PA 269 GM24878-PA 90..269 66..244 591 56.7 Plus
Dsec\GM13832-PA 229 GM13832-PA 47..229 62..244 538 49.2 Plus
Dsec\GM25004-PA 233 GM25004-PA 50..233 61..244 530 49.5 Plus
Dsec\GM18997-PA 422 GM18997-PA 243..422 66..244 506 50.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:54:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14067-PA 244 GD14067-PA 1..244 1..244 1252 93.4 Plus
Dsim\GD12928-PA 269 GD12928-PA 90..269 66..244 591 56.7 Plus
Dsim\GD13118-PA 229 GD13118-PA 47..229 62..244 538 49.2 Plus
Dsim\GD14038-PA 233 GD14038-PA 50..233 61..244 534 48.9 Plus
Dsim\GD16435-PA 420 GD16435-PA 248..389 66..207 454 54.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:54:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12520-PA 240 GJ12520-PA 43..240 47..244 858 76.8 Plus
Dvir\GJ13832-PA 272 GJ13832-PA 67..272 43..244 595 51 Plus
Dvir\GJ19475-PA 323 GJ19475-PA 120..323 46..244 591 52 Plus
Dvir\GJ12668-PA 230 GJ12668-PA 49..230 63..244 566 53.8 Plus
Dvir\GJ13889-PA 238 GJ13889-PA 34..238 39..244 549 47.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17185-PA 229 GK17185-PA 1..229 1..244 847 65.6 Plus
Dwil\GK20927-PA 266 GK20927-PA 86..266 65..244 591 55.2 Plus
Dwil\GK14373-PA 235 GK14373-PA 50..235 59..244 584 52.2 Plus
Dwil\GK12583-PA 280 GK12583-PA 53..235 62..244 567 52.5 Plus
Dwil\GK17737-PA 217 GK17737-PA 26..217 53..244 564 52.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20721-PA 244 GE20721-PA 1..244 1..244 1161 88.1 Plus
Dyak\GE21247-PA 269 GE21247-PA 89..269 65..244 596 56.4 Plus
Dyak\GE20475-PA 229 GE20475-PA 29..229 39..244 557 47.6 Plus
Dyak\GE21642-PA 231 GE21642-PA 34..231 50..244 552 50 Plus
Dyak\GE16544-PA 448 GE16544-PA 220..448 6..244 545 44.6 Plus

GH04024.hyp Sequence

Translation from 98 to 832

> GH04024.hyp
MVYTGYVSNGLQNAEETAWVPYGDPNDWSHGLAVYDGLELMSGNEEELQP
SLNRVMKNIDYDLAMKHPLEHTWTLWHLENDRTKRWAEMLVDVTSFNTVE
DFFSVYYFVKPPSDLKIFNDYMVFKKNIRPMWEDDTNKNGGRWILLLDKA
SRTYIDKMWHDLLLCMIGECFQHSDEICGVVINVRNKANKLSLWTKDSRN
VEAILSIGRQIKELLHLGIMEIQYQVHKDAMVNHGPNVNAIYTL*

GH04024.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-3-PA 244 CG8023-PA 1..244 1..244 1329 100 Plus
eIF-4E-PC 248 CG4035-PC 69..248 66..244 614 58.3 Plus
eIF-4E-PI 259 CG4035-PI 80..259 66..244 614 58.3 Plus
eIF-4E-PH 259 CG4035-PH 80..259 66..244 614 58.3 Plus
eIF-4E-PD 259 CG4035-PD 80..259 66..244 614 58.3 Plus