Clone GH04025 Report

Search the DGRC for GH04025

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:40
Well:25
Vector:pOT2
Associated Gene/TranscriptPtpa-RA
Protein status:GH04025.pep: gold
Preliminary Size:1300
Sequenced Size:1408

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3289 2001-01-01 Release 2 assignment
CG3289 2003-01-01 Sim4 clustering to Release 3
CG3289 2003-02-17 Blastp of sequenced clone
Ptpa 2008-04-29 Release 5.5 accounting
Ptpa 2008-08-15 Release 5.9 accounting
Ptpa 2008-12-18 5.12 accounting

Clone Sequence Records

GH04025.complete Sequence

1408 bp (1408 high quality bases) assembled on 2003-02-17

GenBank Submission: AY060614

> GH04025.complete
AAAAAGAGGAAGATGCCCCCAAAATAACAAACAAAACGTAACTCCCGATC
AAAATAGCTTTAAATTGAAGTTAAATAACGAAACAACTATAATGGCGAGT
GGCATTAACCAAGCAGCAGGTAAACTGCCGGCAATTGCGAAGAAGGTGCA
AAATCTCGGCGATATGGGCGTTTGGCAAAAATCCCGCGCCTTCCACGATT
TAATTGGATATATAAATGGCACCAGTTCGGCCATTCAGGGCATTAAAACC
ACAGACGAGATTTTCGAGTCGGAAATGCTCAAGAAGCTGCTGCGGCTATT
CGATGCACTGGAGAAATTGGTAGAGCAAAATCCTCCATTGGAGCAGCCGC
AGCGGTTCGGAAACAAAGCCTACAGGGATTGGGCGCAGGCAATGCGGGAA
TTGTTGCCCGAACTCCTAGAACAGCTGTTGCCAGACGACAAGAAGCGATA
CCAGGTGGAGCTGGGGCAGTATCTCACTGAATCTTTCGGCAATGCCACCA
GGATCGACTACGGCACCGGCCACGAGCTGTCCTTCCTCTTCTTCCTGTGC
TCCCTGTTCAAGGCGGAGATCCTGCAGGAAAGGGACATCGTGAGTGCTGC
GCTGAGACTCTTCAATCGGTACCTTGAGCTCGCCAGGCAGCTGCAGCGAA
CATACAACATGGAACCCGCTGGGAGCCAAGGAGTCTGGTCGCTGGACGAT
TTCCAGTTCGTGCCCTTCATCTGGGGCAGTGCACAGCTGGCGGTTAAGAG
TCCCTTTGATCCCTCGAAGTTCGTGGACGAGGCGATAATCACCGAGTACA
AGGATCACTTCATGTTCATCAGTTGCATCGACTACATCTGCAAGGTCAAG
ACTGGACACTTTGGCGAGCACTCTAACCAGCTGTGGAGCATCACGGATGT
GCCAACATGGGCCAAGATCAACGCGGGACTAGTTAAGATGTACCAAAAGG
AGATTCTCTCCAAGTTTCCCGTGATCCAGCACGTCTACTTCGGAGAACTG
ATGACATTCGAGCCCGTCTCCTCTGGCACAACTCTGTCCAACGCACGACT
GGGTCATGTGGCTCCGCCGCCATCCAAACGCATCTGCATCGGGACTCCAA
ACTTGGTGCCACCAGTTCCTGTTGCCACTGCTCCTCCTCCGCCCGCCGAA
TCTCTTAGCATCGAACAGAATGTGGGCGACTCGAGCAGTGAGAGCAGCGA
CAACAGCGTGGTACTACGTCCATCCACATCGTCGTCTTCTCTGGTGGCGG
CCGCCGAGGGATCTGGGGATAAGCCCAGCAAGGAATAGACTACAGAATGG
AGGAAAATGGCGATGGTGTAACCTGTGTTAAAAATTCTTATTAATAGCGT
TGGCCAATGGTCCAGTAAAAACTGTTTACACAAGTACAAAAAAAAAAAAA
AAAAAAAA

GH04025.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
Ptpa-RA 1496 Ptpa-RA 90..1478 1..1389 6945 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 3376798..3377429 116..747 3070 99.1 Plus
chr2L 23010047 chr2L 3377774..3378210 951..1387 2170 99.8 Plus
chr2L 23010047 chr2L 3377481..3377690 743..952 1050 100 Plus
chr2L 23010047 chr2L 3376628..3376748 1..121 605 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:30:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3377178..3377809 116..747 3145 99.8 Plus
2L 23513712 2L 3378154..3378592 951..1389 2195 100 Plus
2L 23513712 2L 3377861..3378070 743..952 1050 100 Plus
2L 23513712 2L 3377008..3377128 1..121 605 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3377178..3377809 116..747 3145 99.8 Plus
2L 23513712 2L 3378154..3378592 951..1389 2195 100 Plus
2L 23513712 2L 3377861..3378070 743..952 1050 100 Plus
2L 23513712 2L 3377008..3377128 1..121 605 100 Plus
Blast to na_te.dros performed on 2019-03-16 07:17:54 has no hits.

GH04025.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:18:44 Download gff for GH04025.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 3376628..3376746 1..119 100 -> Plus
chr2L 3376802..3377425 120..743 99 -> Plus
chr2L 3377482..3377690 744..952 100 -> Plus
chr2L 3377776..3378210 953..1387 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:12:20 Download gff for GH04025.complete
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 1..1197 92..1288 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:50:40 Download gff for GH04025.complete
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 1..1197 92..1288 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:07:13 Download gff for GH04025.complete
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 1..1197 92..1288 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:41:50 Download gff for GH04025.complete
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 1..1197 92..1288 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:29:33 Download gff for GH04025.complete
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 1..1197 92..1288 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:03:55 Download gff for GH04025.complete
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 1..1383 1..1383 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:50:39 Download gff for GH04025.complete
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 1..1383 1..1383 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:13 Download gff for GH04025.complete
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 7..1393 1..1387 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:41:50 Download gff for GH04025.complete
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 1..1383 1..1383 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:29:33 Download gff for GH04025.complete
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 7..1393 1..1387 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:18:44 Download gff for GH04025.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3377008..3377126 1..119 100 -> Plus
2L 3377182..3377805 120..743 100 -> Plus
2L 3377862..3378070 744..952 100 -> Plus
2L 3378156..3378590 953..1387 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:18:44 Download gff for GH04025.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3377008..3377126 1..119 100 -> Plus
2L 3377182..3377805 120..743 100 -> Plus
2L 3377862..3378070 744..952 100 -> Plus
2L 3378156..3378590 953..1387 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:18:44 Download gff for GH04025.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3377008..3377126 1..119 100 -> Plus
2L 3377182..3377805 120..743 100 -> Plus
2L 3377862..3378070 744..952 100 -> Plus
2L 3378156..3378590 953..1387 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:13 Download gff for GH04025.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3377008..3377126 1..119 100 -> Plus
arm_2L 3377182..3377805 120..743 100 -> Plus
arm_2L 3377862..3378070 744..952 100 -> Plus
arm_2L 3378156..3378590 953..1387 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:12:28 Download gff for GH04025.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3377182..3377805 120..743 100 -> Plus
2L 3377862..3378070 744..952 100 -> Plus
2L 3378156..3378590 953..1387 100   Plus
2L 3377008..3377126 1..119 100 -> Plus

GH04025.hyp Sequence

Translation from 1 to 1287

> GH04025.hyp
KRGRCPQNNKQNVTPDQNSFKLKLNNETTIMASGINQAAGKLPAIAKKVQ
NLGDMGVWQKSRAFHDLIGYINGTSSAIQGIKTTDEIFESEMLKKLLRLF
DALEKLVEQNPPLEQPQRFGNKAYRDWAQAMRELLPELLEQLLPDDKKRY
QVELGQYLTESFGNATRIDYGTGHELSFLFFLCSLFKAEILQERDIVSAA
LRLFNRYLELARQLQRTYNMEPAGSQGVWSLDDFQFVPFIWGSAQLAVKS
PFDPSKFVDEAIITEYKDHFMFISCIDYICKVKTGHFGEHSNQLWSITDV
PTWAKINAGLVKMYQKEILSKFPVIQHVYFGELMTFEPVSSGTTLSNARL
GHVAPPPSKRICIGTPNLVPPVPVATAPPPPAESLSIEQNVGDSSSESSD
NSVVLRPSTSSSSLVAAAEGSGDKPSKE*

GH04025.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
Ptpa-PA 398 CG3289-PA 1..398 31..428 2063 100 Plus
CG2104-PB 424 CG2104-PB 26..338 48..355 689 43.8 Plus
CG2104-PA 424 CG2104-PA 26..338 48..355 689 43.8 Plus
CG8509-PA 432 CG8509-PA 29..338 47..351 577 39.7 Plus

GH04025.pep Sequence

Translation from 91 to 1287

> GH04025.pep
MASGINQAAGKLPAIAKKVQNLGDMGVWQKSRAFHDLIGYINGTSSAIQG
IKTTDEIFESEMLKKLLRLFDALEKLVEQNPPLEQPQRFGNKAYRDWAQA
MRELLPELLEQLLPDDKKRYQVELGQYLTESFGNATRIDYGTGHELSFLF
FLCSLFKAEILQERDIVSAALRLFNRYLELARQLQRTYNMEPAGSQGVWS
LDDFQFVPFIWGSAQLAVKSPFDPSKFVDEAIITEYKDHFMFISCIDYIC
KVKTGHFGEHSNQLWSITDVPTWAKINAGLVKMYQKEILSKFPVIQHVYF
GELMTFEPVSSGTTLSNARLGHVAPPPSKRICIGTPNLVPPVPVATAPPP
PAESLSIEQNVGDSSSESSDNSVVLRPSTSSSSLVAAAEGSGDKPSKE*

GH04025.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14182-PA 408 GF14182-PA 1..394 1..397 1679 80.9 Plus
Dana\GF18653-PA 408 GF18653-PA 28..342 18..325 681 43 Plus
Dana\GF19862-PA 441 GF19862-PA 28..337 16..320 558 38.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24936-PA 398 GG24936-PA 1..398 1..398 1790 93.7 Plus
Dere\GG10885-PA 533 GG10885-PA 26..338 18..325 737 44.1 Plus
Dere\GG17918-PA 434 GG17918-PA 28..338 16..321 561 38.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10556-PA 404 GH10556-PA 1..393 1..398 1440 73.4 Plus
Dgri\GH12521-PA 456 GH12521-PA 25..340 17..305 409 32.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
Ptpa-PA 398 CG3289-PA 1..398 1..398 2063 100 Plus
CG2104-PB 424 CG2104-PB 26..338 18..325 689 43.8 Plus
CG2104-PA 424 CG2104-PA 26..338 18..325 689 43.8 Plus
CG8509-PA 432 CG8509-PA 29..338 17..321 577 39.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16785-PA 408 GI16785-PA 11..394 11..396 1456 77 Plus
Dmoj\GI14874-PA 499 GI14874-PA 27..340 15..306 510 36 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18611-PA 406 GL18611-PA 1..394 1..393 1558 77.5 Plus
Dper\GL23018-PA 414 GL23018-PA 38..400 24..376 808 43.1 Plus
Dper\GL15320-PA 448 GL15320-PA 32..342 17..322 571 37.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17193-PA 385 GA17193-PA 1..373 1..393 1413 72.4 Plus
Dpse\GA15244-PA 424 GA15244-PA 38..353 24..331 800 45.3 Plus
Dpse\GA28794-PA 451 GA28794-PA 32..342 17..322 562 37.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18413-PA 398 GM18413-PA 1..398 1..398 1845 96 Plus
Dsec\GM10599-PA 460 GM10599-PA 26..338 18..325 709 42.8 Plus
Dsec\GM22587-PA 343 GM22587-PA 28..335 16..318 584 39.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23225-PA 398 GD23225-PA 1..398 1..398 1829 95.2 Plus
Dsim\GD19589-PA 426 GD19589-PA 26..338 18..325 708 43.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17193-PA 424 GJ17193-PA 1..389 1..386 1515 77.9 Plus
Dvir\GJ19538-PA 505 GJ19538-PA 14..339 2..306 522 35.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15526-PA 411 GK15526-PA 6..395 9..396 1478 77.2 Plus
Dwil\GK14079-PA 462 GK14079-PA 25..345 18..329 813 46.6 Plus
Dwil\GK25681-PA 536 GK25681-PA 27..343 17..321 593 37.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18228-PA 398 GE18228-PA 1..398 1..398 1833 92 Plus
Dyak\GE24145-PA 425 GE24145-PA 26..338 18..325 735 45.3 Plus
Dyak\GE17226-PA 436 GE17226-PA 28..338 16..321 594 38.7 Plus