BDGP Sequence Production Resources |
Search the DGRC for GH04030
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 40 |
Well: | 30 |
Vector: | pOT2 |
Associated Gene/Transcript | AttB-RA |
Protein status: | GH04030.pep: gold |
Sequenced Size: | 938 |
Gene | Date | Evidence |
---|---|---|
CG18372 | 2003-01-01 | Sim4 clustering to Release 3 |
CG18372 | 2003-04-01 | Blastp of sequenced clone |
AttB | 2008-04-29 | Release 5.5 accounting |
AttB | 2008-08-15 | Release 5.9 accounting |
AttB | 2008-12-18 | 5.12 accounting |
938 bp (938 high quality bases) assembled on 2003-04-01
GenBank Submission: BT011154
> GH04030.complete CAGCAATCCAGTCCAGCAACATGCAGAAGACAAGCATCCTTATCTTGGCA CTTTTCGCCATCGCAGAGGCAGTTCCCACAACAGGACCCATTCGGGTCCG TCGCCAGGTGCTTGGAGGTTCCTTAGCCTCCAATCCCGCTGGAGGGGCTG ATGCTCGGTTGAATCTCAGCAAGGGCATTGGCAATCCCAACCATAATGTG GTAGGTCAGGTTTTCGCCGCCGGAAACACTCAAAGCGGTCCAGTCACAAC TGGCGGAACTTTGGCCTACAACAATGCTGGTCATGGTGCCTCTTTGACCA AAACACACACGCCCGGAGTGAAGGATGTCTTCCAGCAGGAGGCCCATGCC AATTTATTCAACAATGGCAGACACAATCTGGATGCCAAGGTCTTTGCTTC ACAAAATAAACTGGCCAATGGCTTCGAGTTCCAGCGCAATGGAGCTGGTC TGGATTACTCCCACATCAACGGACATGGTGGATCCTTGACGCACAGCAAC TTCCCAGGAATCGGCCAGCAACTCGGCCTGGACGGACGTGCTAATCTCTG GTCATCGCCCAATCGTGCTACTACCTTGGACCTCACGGGATCGGCGAGCA AGTGGACGAGTGGTCCGTTTGCCAACCAGAAGCCAAACTTTGGTGCTGGC CTGGGACTTTCCCACCACTTCGGTTAAATATTACCCTGGTATAGATGTAG AAACTAATTTATTTAAAACAAAATAAAAAATAATCAAAAAAGCTATGAAG CTATCTGCTAAATTATTACCCTTCTTAAAATCAAAAAAATATATATTTCA CTGAGCAAATAGAATATGAACATCCATTTCAAAACCTGGATTAAATATAC GCTTTTCGTATCAGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
AttB-RB | 1020 | AttB-RB | 154..1020 | 1..867 | 4335 | 100 | Plus |
AttB-RA | 1020 | AttB-RA | 154..1020 | 1..867 | 4335 | 100 | Plus |
AttA-RA | 1068 | AttA-RA | 355..986 | 46..677 | 2710 | 95.2 | Plus |
AttA-RA | 1068 | AttA-RA | 301..349 | 1..49 | 185 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 10636859..10637451 | 275..867 | 2935 | 99.7 | Plus |
chr2R | 21145070 | chr2R | 10635002..10635404 | 275..677 | 1775 | 96 | Plus |
chr2R | 21145070 | chr2R | 10636521..10636794 | 1..274 | 1340 | 99.3 | Plus |
chr2R | 21145070 | chr2R | 10634655..10634937 | 1..274 | 960 | 90.1 | Plus |
chr2R | 21145070 | chr2R | 9281496..9281695 | 295..494 | 370 | 79 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 14749573..14750166 | 275..868 | 2970 | 100 | Plus |
2R | 25286936 | 2R | 14747718..14748120 | 275..677 | 1790 | 96.3 | Plus |
2R | 25286936 | 2R | 14749235..14749508 | 1..274 | 1370 | 100 | Plus |
2R | 25286936 | 2R | 14747371..14747653 | 1..274 | 960 | 90.1 | Plus |
2R | 25286936 | 2R | 13394170..13394369 | 295..494 | 355 | 78.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 14750772..14751365 | 275..868 | 2970 | 100 | Plus |
2R | 25260384 | 2R | 14748917..14749319 | 275..677 | 1790 | 96.2 | Plus |
2R | 25260384 | 2R | 14750434..14750707 | 1..274 | 1370 | 100 | Plus |
2R | 25260384 | 2R | 14748624..14748852 | 46..274 | 920 | 93.4 | Plus |
2R | 25260384 | 2R | 13395369..13395568 | 295..494 | 355 | 78.5 | Plus |
2R | 25260384 | 2R | 14748570..14748618 | 1..49 | 185 | 91.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 10636521..10636794 | 1..274 | 99 | -> | Plus |
chr2R | 10636859..10637451 | 275..867 | 94 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AttB-RA | 1..657 | 21..677 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AttB-RB | 1..657 | 21..677 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AttB-RA | 1..657 | 21..677 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AttB-RA | 1..657 | 21..677 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AttB-RA | 1..657 | 21..677 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AttB-RA | 13..789 | 1..777 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AttB-RB | 1..867 | 1..867 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AttB-RB | 13..879 | 1..867 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AttB-RA | 13..789 | 1..777 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AttB-RB | 13..879 | 1..867 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14749235..14749508 | 1..274 | 100 | -> | Plus |
2R | 14749573..14750165 | 275..867 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14749235..14749508 | 1..274 | 100 | -> | Plus |
2R | 14749573..14750165 | 275..867 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14749235..14749508 | 1..274 | 100 | -> | Plus |
2R | 14749573..14750165 | 275..867 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 10636740..10637013 | 1..274 | 100 | -> | Plus |
arm_2R | 10637078..10637670 | 275..867 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14750434..14750707 | 1..274 | 100 | -> | Plus |
2R | 14750772..14751364 | 275..867 | 100 | Plus |
Translation from 2 to 676
> GH04030.hyp AIQSSNMQKTSILILALFAIAEAVPTTGPIRVRRQVLGGSLASNPAGGAD ARLNLSKGIGNPNHNVVGQVFAAGNTQSGPVTTGGTLAYNNAGHGASLTK THTPGVKDVFQQEAHANLFNNGRHNLDAKVFASQNKLANGFEFQRNGAGL DYSHINGHGGSLTHSNFPGIGQQLGLDGRANLWSSPNRATTLDLTGSASK WTSGPFANQKPNFGAGLGLSHHFG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
AttB-PB | 218 | CG18372-PB | 1..218 | 7..224 | 1148 | 100 | Plus |
AttB-PA | 218 | CG18372-PA | 1..218 | 7..224 | 1148 | 100 | Plus |
AttA-PA | 221 | CG10146-PA | 1..221 | 7..224 | 1101 | 95 | Plus |
AttC-PB | 241 | CG4740-PB | 37..241 | 25..224 | 739 | 69.9 | Plus |
AttD-PA | 181 | CG7629-PA | 6..181 | 42..223 | 194 | 32.8 | Plus |
Translation from 20 to 676
> GH04030.pep MQKTSILILALFAIAEAVPTTGPIRVRRQVLGGSLASNPAGGADARLNLS KGIGNPNHNVVGQVFAAGNTQSGPVTTGGTLAYNNAGHGASLTKTHTPGV KDVFQQEAHANLFNNGRHNLDAKVFASQNKLANGFEFQRNGAGLDYSHIN GHGGSLTHSNFPGIGQQLGLDGRANLWSSPNRATTLDLTGSASKWTSGPF ANQKPNFGAGLGLSHHFG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11339-PA | 235 | GF11339-PA | 46..235 | 29..218 | 880 | 88.9 | Plus |
Dana\GF13689-PA | 244 | GF13689-PA | 45..244 | 23..218 | 744 | 73.6 | Plus |
Dana\GF17819-PA | 181 | GF17819-PA | 8..181 | 38..217 | 143 | 32.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20476-PA | 224 | GG20476-PA | 1..224 | 1..218 | 1038 | 91.5 | Plus |
Dere\GG20477-PA | 224 | GG20477-PA | 1..224 | 1..218 | 1036 | 91.5 | Plus |
Dere\GG20378-PA | 222 | GG20378-PA | 1..222 | 1..218 | 745 | 67.7 | Plus |
Dere\GG22395-PA | 181 | GG22395-PA | 33..181 | 64..217 | 138 | 33.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20752-PA | 235 | GH20752-PA | 1..235 | 1..218 | 833 | 71.2 | Plus |
Dgri\GH23752-PA | 243 | GH23752-PA | 37..243 | 19..217 | 678 | 64.9 | Plus |
Dgri\GH21628-PA | 243 | GH21628-PA | 46..243 | 25..217 | 655 | 65.8 | Plus |
Dgri\GH18099-PA | 181 | GH18099-PA | 8..181 | 38..217 | 187 | 34.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
AttB-PB | 218 | CG18372-PB | 1..218 | 1..218 | 1148 | 100 | Plus |
AttB-PA | 218 | CG18372-PA | 1..218 | 1..218 | 1148 | 100 | Plus |
AttA-PA | 221 | CG10146-PA | 1..221 | 1..218 | 1101 | 95 | Plus |
AttC-PB | 241 | CG4740-PB | 37..241 | 19..218 | 739 | 69.9 | Plus |
AttD-PA | 181 | CG7629-PA | 6..181 | 36..217 | 194 | 32.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20837-PA | 237 | GI20837-PA | 5..237 | 2..218 | 822 | 71.9 | Plus |
Dmoj\GI20082-PA | 177 | GI20082-PA | 45..173 | 24..147 | 494 | 75.2 | Plus |
Dmoj\GI24598-PA | 181 | GI24598-PA | 8..181 | 38..217 | 165 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23315-PA | 232 | GL23315-PA | 1..231 | 1..218 | 837 | 72.7 | Plus |
Dper\GL23282-PA | 234 | GL23282-PA | 39..233 | 24..218 | 807 | 77.9 | Plus |
Dper\GL11458-PA | 247 | GL11458-PA | 41..245 | 24..217 | 747 | 72.2 | Plus |
Dper\GL21518-PA | 181 | GL21518-PA | 8..181 | 38..217 | 144 | 31.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10109-PA | 236 | GA10109-PA | 41..234 | 24..217 | 858 | 83.5 | Plus |
Dpse\GA27220-PA | 232 | GA27220-PA | 1..231 | 1..218 | 848 | 73.2 | Plus |
Dpse\GA27207-PA | 234 | GA27207-PA | 33..232 | 19..217 | 805 | 77.5 | Plus |
Dpse\GA20491-PA | 181 | GA20491-PA | 8..181 | 38..217 | 155 | 32.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21567-PA | 218 | GM21567-PA | 1..218 | 1..218 | 1099 | 97.2 | Plus |
Dsec\GM21465-PA | 222 | GM21465-PA | 1..222 | 1..218 | 736 | 66.8 | Plus |
Dsec\GM15251-PA | 181 | GM15251-PA | 22..181 | 53..217 | 148 | 33.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\AttB-PA | 218 | GD11073-PA | 1..218 | 1..218 | 1105 | 98.6 | Plus |
Dsim\AttA-PA | 218 | GD11072-PA | 1..218 | 1..218 | 1055 | 93.6 | Plus |
Dsim\AttC-PA | 222 | GD10964-PA | 1..222 | 1..218 | 740 | 66.8 | Plus |
Dsim\GD19176-PA | 181 | GD19176-PA | 8..181 | 38..217 | 149 | 32 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20572-PA | 234 | GJ20572-PA | 1..234 | 1..218 | 868 | 74 | Plus |
Dvir\GJ20571-PA | 234 | GJ20571-PA | 1..234 | 1..218 | 863 | 73.6 | Plus |
Dvir\GJ21173-PA | 235 | GJ21173-PA | 37..235 | 24..218 | 690 | 67.5 | Plus |
Dvir\GJ22662-PA | 181 | GJ22662-PA | 9..181 | 19..217 | 173 | 31.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19632-PA | 234 | GK19632-PA | 1..234 | 1..218 | 789 | 71.1 | Plus |
Dwil\GK17822-PA | 247 | GK17822-PA | 26..247 | 2..218 | 746 | 66.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\AttA-PA | 224 | GE13606-PA | 1..224 | 1..218 | 1033 | 91.5 | Plus |
Dyak\GE13607-PA | 224 | GE13607-PA | 1..224 | 1..218 | 1033 | 91.5 | Plus |
Dyak\GE12538-PA | 222 | GE12538-PA | 1..222 | 1..218 | 741 | 67.3 | Plus |