Clone GH04030 Report

Search the DGRC for GH04030

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:40
Well:30
Vector:pOT2
Associated Gene/TranscriptAttB-RA
Protein status:GH04030.pep: gold
Sequenced Size:938

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18372 2003-01-01 Sim4 clustering to Release 3
CG18372 2003-04-01 Blastp of sequenced clone
AttB 2008-04-29 Release 5.5 accounting
AttB 2008-08-15 Release 5.9 accounting
AttB 2008-12-18 5.12 accounting

Clone Sequence Records

GH04030.complete Sequence

938 bp (938 high quality bases) assembled on 2003-04-01

GenBank Submission: BT011154

> GH04030.complete
CAGCAATCCAGTCCAGCAACATGCAGAAGACAAGCATCCTTATCTTGGCA
CTTTTCGCCATCGCAGAGGCAGTTCCCACAACAGGACCCATTCGGGTCCG
TCGCCAGGTGCTTGGAGGTTCCTTAGCCTCCAATCCCGCTGGAGGGGCTG
ATGCTCGGTTGAATCTCAGCAAGGGCATTGGCAATCCCAACCATAATGTG
GTAGGTCAGGTTTTCGCCGCCGGAAACACTCAAAGCGGTCCAGTCACAAC
TGGCGGAACTTTGGCCTACAACAATGCTGGTCATGGTGCCTCTTTGACCA
AAACACACACGCCCGGAGTGAAGGATGTCTTCCAGCAGGAGGCCCATGCC
AATTTATTCAACAATGGCAGACACAATCTGGATGCCAAGGTCTTTGCTTC
ACAAAATAAACTGGCCAATGGCTTCGAGTTCCAGCGCAATGGAGCTGGTC
TGGATTACTCCCACATCAACGGACATGGTGGATCCTTGACGCACAGCAAC
TTCCCAGGAATCGGCCAGCAACTCGGCCTGGACGGACGTGCTAATCTCTG
GTCATCGCCCAATCGTGCTACTACCTTGGACCTCACGGGATCGGCGAGCA
AGTGGACGAGTGGTCCGTTTGCCAACCAGAAGCCAAACTTTGGTGCTGGC
CTGGGACTTTCCCACCACTTCGGTTAAATATTACCCTGGTATAGATGTAG
AAACTAATTTATTTAAAACAAAATAAAAAATAATCAAAAAAGCTATGAAG
CTATCTGCTAAATTATTACCCTTCTTAAAATCAAAAAAATATATATTTCA
CTGAGCAAATAGAATATGAACATCCATTTCAAAACCTGGATTAAATATAC
GCTTTTCGTATCAGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH04030.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
AttB-RB 1020 AttB-RB 154..1020 1..867 4335 100 Plus
AttB-RA 1020 AttB-RA 154..1020 1..867 4335 100 Plus
AttA-RA 1068 AttA-RA 355..986 46..677 2710 95.2 Plus
AttA-RA 1068 AttA-RA 301..349 1..49 185 91.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10636859..10637451 275..867 2935 99.7 Plus
chr2R 21145070 chr2R 10635002..10635404 275..677 1775 96 Plus
chr2R 21145070 chr2R 10636521..10636794 1..274 1340 99.3 Plus
chr2R 21145070 chr2R 10634655..10634937 1..274 960 90.1 Plus
chr2R 21145070 chr2R 9281496..9281695 295..494 370 79 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:30:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14749573..14750166 275..868 2970 100 Plus
2R 25286936 2R 14747718..14748120 275..677 1790 96.3 Plus
2R 25286936 2R 14749235..14749508 1..274 1370 100 Plus
2R 25286936 2R 14747371..14747653 1..274 960 90.1 Plus
2R 25286936 2R 13394170..13394369 295..494 355 78.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14750772..14751365 275..868 2970 100 Plus
2R 25260384 2R 14748917..14749319 275..677 1790 96.2 Plus
2R 25260384 2R 14750434..14750707 1..274 1370 100 Plus
2R 25260384 2R 14748624..14748852 46..274 920 93.4 Plus
2R 25260384 2R 13395369..13395568 295..494 355 78.5 Plus
2R 25260384 2R 14748570..14748618 1..49 185 91.8 Plus
Blast to na_te.dros performed on 2019-03-16 03:41:58 has no hits.

GH04030.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:43:03 Download gff for GH04030.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10636521..10636794 1..274 99 -> Plus
chr2R 10636859..10637451 275..867 94   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:12:23 Download gff for GH04030.complete
Subject Subject Range Query Range Percent Splice Strand
AttB-RA 1..657 21..677 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:44:11 Download gff for GH04030.complete
Subject Subject Range Query Range Percent Splice Strand
AttB-RB 1..657 21..677 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:02:03 Download gff for GH04030.complete
Subject Subject Range Query Range Percent Splice Strand
AttB-RA 1..657 21..677 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:33:47 Download gff for GH04030.complete
Subject Subject Range Query Range Percent Splice Strand
AttB-RA 1..657 21..677 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:12:04 Download gff for GH04030.complete
Subject Subject Range Query Range Percent Splice Strand
AttB-RA 1..657 21..677 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:54:42 Download gff for GH04030.complete
Subject Subject Range Query Range Percent Splice Strand
AttB-RA 13..789 1..777 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:44:11 Download gff for GH04030.complete
Subject Subject Range Query Range Percent Splice Strand
AttB-RB 1..867 1..867 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:02:03 Download gff for GH04030.complete
Subject Subject Range Query Range Percent Splice Strand
AttB-RB 13..879 1..867 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:33:47 Download gff for GH04030.complete
Subject Subject Range Query Range Percent Splice Strand
AttB-RA 13..789 1..777 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:12:04 Download gff for GH04030.complete
Subject Subject Range Query Range Percent Splice Strand
AttB-RB 13..879 1..867 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:43:03 Download gff for GH04030.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14749235..14749508 1..274 100 -> Plus
2R 14749573..14750165 275..867 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:43:03 Download gff for GH04030.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14749235..14749508 1..274 100 -> Plus
2R 14749573..14750165 275..867 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:43:03 Download gff for GH04030.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14749235..14749508 1..274 100 -> Plus
2R 14749573..14750165 275..867 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:02:03 Download gff for GH04030.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10636740..10637013 1..274 100 -> Plus
arm_2R 10637078..10637670 275..867 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:05:39 Download gff for GH04030.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14750434..14750707 1..274 100 -> Plus
2R 14750772..14751364 275..867 100   Plus

GH04030.hyp Sequence

Translation from 2 to 676

> GH04030.hyp
AIQSSNMQKTSILILALFAIAEAVPTTGPIRVRRQVLGGSLASNPAGGAD
ARLNLSKGIGNPNHNVVGQVFAAGNTQSGPVTTGGTLAYNNAGHGASLTK
THTPGVKDVFQQEAHANLFNNGRHNLDAKVFASQNKLANGFEFQRNGAGL
DYSHINGHGGSLTHSNFPGIGQQLGLDGRANLWSSPNRATTLDLTGSASK
WTSGPFANQKPNFGAGLGLSHHFG*

GH04030.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
AttB-PB 218 CG18372-PB 1..218 7..224 1148 100 Plus
AttB-PA 218 CG18372-PA 1..218 7..224 1148 100 Plus
AttA-PA 221 CG10146-PA 1..221 7..224 1101 95 Plus
AttC-PB 241 CG4740-PB 37..241 25..224 739 69.9 Plus
AttD-PA 181 CG7629-PA 6..181 42..223 194 32.8 Plus

GH04030.pep Sequence

Translation from 20 to 676

> GH04030.pep
MQKTSILILALFAIAEAVPTTGPIRVRRQVLGGSLASNPAGGADARLNLS
KGIGNPNHNVVGQVFAAGNTQSGPVTTGGTLAYNNAGHGASLTKTHTPGV
KDVFQQEAHANLFNNGRHNLDAKVFASQNKLANGFEFQRNGAGLDYSHIN
GHGGSLTHSNFPGIGQQLGLDGRANLWSSPNRATTLDLTGSASKWTSGPF
ANQKPNFGAGLGLSHHFG*

GH04030.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11339-PA 235 GF11339-PA 46..235 29..218 880 88.9 Plus
Dana\GF13689-PA 244 GF13689-PA 45..244 23..218 744 73.6 Plus
Dana\GF17819-PA 181 GF17819-PA 8..181 38..217 143 32.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20476-PA 224 GG20476-PA 1..224 1..218 1038 91.5 Plus
Dere\GG20477-PA 224 GG20477-PA 1..224 1..218 1036 91.5 Plus
Dere\GG20378-PA 222 GG20378-PA 1..222 1..218 745 67.7 Plus
Dere\GG22395-PA 181 GG22395-PA 33..181 64..217 138 33.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20752-PA 235 GH20752-PA 1..235 1..218 833 71.2 Plus
Dgri\GH23752-PA 243 GH23752-PA 37..243 19..217 678 64.9 Plus
Dgri\GH21628-PA 243 GH21628-PA 46..243 25..217 655 65.8 Plus
Dgri\GH18099-PA 181 GH18099-PA 8..181 38..217 187 34.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
AttB-PB 218 CG18372-PB 1..218 1..218 1148 100 Plus
AttB-PA 218 CG18372-PA 1..218 1..218 1148 100 Plus
AttA-PA 221 CG10146-PA 1..221 1..218 1101 95 Plus
AttC-PB 241 CG4740-PB 37..241 19..218 739 69.9 Plus
AttD-PA 181 CG7629-PA 6..181 36..217 194 32.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20837-PA 237 GI20837-PA 5..237 2..218 822 71.9 Plus
Dmoj\GI20082-PA 177 GI20082-PA 45..173 24..147 494 75.2 Plus
Dmoj\GI24598-PA 181 GI24598-PA 8..181 38..217 165 30.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23315-PA 232 GL23315-PA 1..231 1..218 837 72.7 Plus
Dper\GL23282-PA 234 GL23282-PA 39..233 24..218 807 77.9 Plus
Dper\GL11458-PA 247 GL11458-PA 41..245 24..217 747 72.2 Plus
Dper\GL21518-PA 181 GL21518-PA 8..181 38..217 144 31.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10109-PA 236 GA10109-PA 41..234 24..217 858 83.5 Plus
Dpse\GA27220-PA 232 GA27220-PA 1..231 1..218 848 73.2 Plus
Dpse\GA27207-PA 234 GA27207-PA 33..232 19..217 805 77.5 Plus
Dpse\GA20491-PA 181 GA20491-PA 8..181 38..217 155 32.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21567-PA 218 GM21567-PA 1..218 1..218 1099 97.2 Plus
Dsec\GM21465-PA 222 GM21465-PA 1..222 1..218 736 66.8 Plus
Dsec\GM15251-PA 181 GM15251-PA 22..181 53..217 148 33.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\AttB-PA 218 GD11073-PA 1..218 1..218 1105 98.6 Plus
Dsim\AttA-PA 218 GD11072-PA 1..218 1..218 1055 93.6 Plus
Dsim\AttC-PA 222 GD10964-PA 1..222 1..218 740 66.8 Plus
Dsim\GD19176-PA 181 GD19176-PA 8..181 38..217 149 32 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20572-PA 234 GJ20572-PA 1..234 1..218 868 74 Plus
Dvir\GJ20571-PA 234 GJ20571-PA 1..234 1..218 863 73.6 Plus
Dvir\GJ21173-PA 235 GJ21173-PA 37..235 24..218 690 67.5 Plus
Dvir\GJ22662-PA 181 GJ22662-PA 9..181 19..217 173 31.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19632-PA 234 GK19632-PA 1..234 1..218 789 71.1 Plus
Dwil\GK17822-PA 247 GK17822-PA 26..247 2..218 746 66.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\AttA-PA 224 GE13606-PA 1..224 1..218 1033 91.5 Plus
Dyak\GE13607-PA 224 GE13607-PA 1..224 1..218 1033 91.5 Plus
Dyak\GE12538-PA 222 GE12538-PA 1..222 1..218 741 67.3 Plus