Clone GH04031 Report

Search the DGRC for GH04031

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:40
Well:31
Vector:pOT2
Associated Gene/TranscriptSptr-RA
Protein status:GH04031.pep: gold
Preliminary Size:1300
Sequenced Size:1144

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12117 2001-01-01 Release 2 assignment
CG12117 2002-05-15 Blastp of sequenced clone
CG12117 2003-01-01 Sim4 clustering to Release 3
Sptr 2008-04-29 Release 5.5 accounting
Sptr 2008-08-15 Release 5.9 accounting
Sptr 2008-12-18 5.12 accounting

Clone Sequence Records

GH04031.complete Sequence

1144 bp (1144 high quality bases) assembled on 2002-05-15

GenBank Submission: AY118731

> GH04031.complete
CGGAGAATCAGGTAAAAGCCAAAGCGAGTTAAGGCAAAAAGACAGCCAAC
TGTTGCCACTTCAGCGGTGTGGAAATTAGAAAGTAATATAGTCCGTGTTT
TTCACGCAATCATGGACCTGAAACAGCGCACATATCTCCTGGTGACCGGT
GCATCACGTGGAATTGGCCGTGAGTTCGCCCAGCAGTTAGCCAAACGGAT
CAAAGCCGAGGGTTCCATGGTGACGCTTCTGGGACGCAATCAAACCCTTT
TGCAGGAGTCTAAGGCAGAGATTGTCGCCACAGTGCCAGATCTATCCGTG
CAAACCTATTCGCTGGAGCTGGAAACGGCCAAAACGGAGGACTTTACCAA
GATTCTGGAGGCATCCGGTGGAAAGAACAATTTCGAGCGAGCCATAGTCA
TTCATAATGCCGGCACAGTGGGCGATACGTCAAAGAGGGCCAAAGAAATC
GGAGATACCGACTTCCTACAGCGCTACTACCACTCCAATGTCTTCTCGGC
CATTTCGCTAAACTGCGAGTTTATGCGCGTCTTCAAGGGAATCCCAAAGT
TGGTGGTTAATCTCAGCACCTTGGCAGCCATTGCACCTATATCCTCGATG
GCACACTATTGCACGGTGAAGGCAGCCCGTGAGATGTACTTCCGAGTGCT
GGCCACCGAGGAGTCCGCCGAGGACACCCTGGTGTTGAACTACGCGCCCG
GCGTCATAGACACACAGATGACCGTCCAGGTTCAGCGAGAGGCCCACGAT
CCCGCCGTGGTCGCCATGTTTCGAGAGCAAAGGGAGTCCAAGACCATGCT
GACTCCCGCCCAAACGACGGAGCGATTCATCAAAGTCCTGGAAGCATTCA
AGTTCAAGTCCGGCGATCATGTGGATTACAGGGATGAGCAGTTCTAGCTA
GTTAATCAGTATGTTGCTATCTGTGGTAATGGGGTTTTTCGTATTGAAAC
ATTAAAATGAAACTAAAAATGTGCGCAAGTGTTTTTGCTACAACACCCAA
TACATCTTAATGAACTTCAAAGCTGATAAGATATGTGTATGATGTTTATG
ATTTACGCATTCTTAAATCTTCTTTCCAACAACTCGGCATCTATTTATAA
GAAATATACAATTCGTAACAACAAAAAAAAAAAAAAAAAAAAAA

GH04031.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
Sptr-RA 1693 Sptr-RA 581..1693 1..1113 5565 100 Plus
Es2-RA 1782 Es2-RA 1686..1782 1123..1027 485 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8355074..8356195 1122..1 5610 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:30:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8463295..8464417 1123..1 5615 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8471393..8472515 1123..1 5615 100 Minus
Blast to na_te.dros performed on 2019-03-16 23:49:09 has no hits.

GH04031.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:49:57 Download gff for GH04031.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8355074..8356195 1..1122 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:12:27 Download gff for GH04031.complete
Subject Subject Range Query Range Percent Splice Strand
Sptr-RA 1..786 112..897 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:51:56 Download gff for GH04031.complete
Subject Subject Range Query Range Percent Splice Strand
Sptr-RA 1..786 112..897 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:51:08 Download gff for GH04031.complete
Subject Subject Range Query Range Percent Splice Strand
Sptr-RA 1..786 112..897 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:44:32 Download gff for GH04031.complete
Subject Subject Range Query Range Percent Splice Strand
Sptr-RA 1..786 112..897 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:00:54 Download gff for GH04031.complete
Subject Subject Range Query Range Percent Splice Strand
Sptr-RA 1..786 112..897 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:29:56 Download gff for GH04031.complete
Subject Subject Range Query Range Percent Splice Strand
Sptr-RA 581..1693 1..1113 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:51:56 Download gff for GH04031.complete
Subject Subject Range Query Range Percent Splice Strand
Sptr-RA 581..1693 1..1113 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:08 Download gff for GH04031.complete
Subject Subject Range Query Range Percent Splice Strand
Sptr-RA 22..1143 1..1122 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:44:33 Download gff for GH04031.complete
Subject Subject Range Query Range Percent Splice Strand
Sptr-RA 581..1693 1..1113 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:00:54 Download gff for GH04031.complete
Subject Subject Range Query Range Percent Splice Strand
Sptr-RA 22..1143 1..1122 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:49:57 Download gff for GH04031.complete
Subject Subject Range Query Range Percent Splice Strand
X 8463296..8464417 1..1122 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:49:57 Download gff for GH04031.complete
Subject Subject Range Query Range Percent Splice Strand
X 8463296..8464417 1..1122 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:49:57 Download gff for GH04031.complete
Subject Subject Range Query Range Percent Splice Strand
X 8463296..8464417 1..1122 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:08 Download gff for GH04031.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8357329..8358450 1..1122 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:16:54 Download gff for GH04031.complete
Subject Subject Range Query Range Percent Splice Strand
X 8471394..8472515 1..1122 100   Minus

GH04031.pep Sequence

Translation from 111 to 896

> GH04031.pep
MDLKQRTYLLVTGASRGIGREFAQQLAKRIKAEGSMVTLLGRNQTLLQES
KAEIVATVPDLSVQTYSLELETAKTEDFTKILEASGGKNNFERAIVIHNA
GTVGDTSKRAKEIGDTDFLQRYYHSNVFSAISLNCEFMRVFKGIPKLVVN
LSTLAAIAPISSMAHYCTVKAAREMYFRVLATEESAEDTLVLNYAPGVID
TQMTVQVQREAHDPAVVAMFREQRESKTMLTPAQTTERFIKVLEAFKFKS
GDHVDYRDEQF*

GH04031.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22581-PA 261 GF22581-PA 1..258 1..258 1067 76 Plus
Dana\GF22580-PA 268 GF22580-PA 6..264 1..258 245 25.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19046-PA 261 GG19046-PA 1..261 1..261 1313 93.5 Plus
Dere\GG19045-PA 273 GG19045-PA 6..269 1..258 255 29 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23915-PA 261 GH23915-PA 1..261 1..258 965 69.7 Plus
Dgri\GH12505-PA 261 GH12505-PA 1..261 1..258 965 69.7 Plus
Dgri\GH12504-PA 268 GH12504-PA 6..264 1..258 322 32.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
Sptr-PA 261 CG12117-PA 1..261 1..261 1304 100 Plus
CG12116-PA 273 CG12116-PA 6..269 1..258 252 28 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14858-PA 261 GI14858-PA 1..261 1..258 990 71.3 Plus
Dmoj\GI14857-PA 264 GI14857-PA 6..263 1..261 283 30.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20246-PA 267 GL20246-PA 1..264 1..259 1085 75.8 Plus
Dper\GL20245-PA 269 GL20245-PA 6..265 1..258 269 29.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11411-PA 267 GA11411-PA 1..263 1..258 1100 77.2 Plus
Dpse\GA11410-PA 269 GA11410-PA 6..265 1..258 268 29.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21323-PA 261 GM21323-PA 1..261 1..261 1373 98.5 Plus
Dsec\GM21301-PA 273 GM21301-PA 6..269 1..258 265 29.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16111-PA 261 GD16111-PA 1..261 1..261 1368 98.1 Plus
Dsim\GD16109-PA 273 GD16109-PA 6..269 1..258 265 29.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19518-PA 270 GJ19518-PA 6..269 1..261 280 30.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19890-PA 265 GK19890-PA 1..264 1..258 971 69.7 Plus
Dwil\GK19889-PA 280 GK19889-PA 6..276 1..258 239 25.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17450-PA 262 GE17450-PA 1..262 1..261 1272 90.8 Plus
Dyak\GE17449-PA 273 GE17449-PA 6..269 1..258 279 29.9 Plus

GH04031.hyp Sequence

Translation from 111 to 896

> GH04031.hyp
MDLKQRTYLLVTGASRGIGREFAQQLAKRIKAEGSMVTLLGRNQTLLQES
KAEIVATVPDLSVQTYSLELETAKTEDFTKILEASGGKNNFERAIVIHNA
GTVGDTSKRAKEIGDTDFLQRYYHSNVFSAISLNCEFMRVFKGIPKLVVN
LSTLAAIAPISSMAHYCTVKAAREMYFRVLATEESAEDTLVLNYAPGVID
TQMTVQVQREAHDPAVVAMFREQRESKTMLTPAQTTERFIKVLEAFKFKS
GDHVDYRDEQF*

GH04031.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
Sptr-PA 261 CG12117-PA 1..261 1..261 1304 100 Plus
CG12116-PA 273 CG12116-PA 6..269 1..258 252 28 Plus