Clone GH04035 Report

Search the DGRC for GH04035

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:40
Well:35
Vector:pOT2
Associated Gene/TranscriptCG7560-RA
Protein status:GH04035.pep: gold
Preliminary Size:1082
Sequenced Size:1125

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7560 2002-01-01 Sim4 clustering to Release 2
CG7560 2002-05-18 Blastp of sequenced clone
CG7560 2003-01-01 Sim4 clustering to Release 3
CG7560 2008-04-29 Release 5.5 accounting
CG7560 2008-08-15 Release 5.9 accounting
CG7560 2008-12-18 5.12 accounting

Clone Sequence Records

GH04035.complete Sequence

1125 bp (1125 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118732

> GH04035.complete
TTGAGCGAGCGTGGTTCCAAATCAATGCATGCGATTCAAGTGCCCGCCGG
TGGTTCGTCGCCTGGTGCTGCCTCCTACATTCCCTGCGTGACCTTTGCCC
CCGATCAAAATGAATCCGTAGTGACGAAGCAGCGGATAGGAACGCTCGTG
GCGGAGCGAACAGCCCAACATCGCCTCTTCTACGGCATCGAGGTGATGGC
CAGCGATCCGAGTGGCCGGCCAACCTGCCTGGACTTTAATCACTTCCTGC
CGCTCCTGCCCACCTTCGTGAGCTTCGTTTGGCTGAGTCAGCGGTACTGG
GACGTGGAGCCAGTGGGTCAGGTGGAGAGCCTTCAGATGGCCCAACACCT
GGCCACACGCATTCCCGTGCTGCCCCATGTGTCCGCCTATCGAATGAGTA
GGCAGCGACTGGATCAGTTTTTGGCCCTCAACTTTAGCAGTCTTTTGGCC
GTTCGAGGGGATCGAGTTCACGAGGATCAGGATTTCTCGATTAGCTACCC
CATGGTGGAGCAATCGATACGGCAGAGGGGTGAAACAATATCAGTCTGTG
TGGGTGGATATCCAGAGGGATACACTAGTTTAGGCGACATACCACAAAAT
TCAGCTAAGAACATGGAGTTTCTAAAGGCAAAGATTGATGCTGGAGCAGA
TTGCATTATCACACAGTTATGCTACCGTCCCGAGGTCATAGTGCAATTTG
TGAAGGACTGTCGAGCAGCTGGAATCTCGGTACCCATTGTTGTGGGACTG
ATGTCGCATGAATCCTTTCGCTCCTACTCAATGATCGAGCAAATAACCGG
CGTCCATCTGCCAGATGATTTGCGAGAGCAACTCGATCAGCTGCATAGTG
CCCATATGAAGGATATGAAGTCTGACCAAGATCTGATAAGAAGGTTCTTT
GTTAGCCTCACCGTCCGAACGATTCGTAATGTTTTGGATGCCGATGTGGG
GGTTTGGGGCTTCCACTTCTTCACACTCAACCGCTTTAAGTCCGTCCAGG
CTGTGCTGCAAGAACTTCGAGATCTGGATCTGTTAAAGGATTCTGAAAAG
GATAAGAAAGGCTACGAAAAGTGATCATATGTCAGAAGCTAATAAAATTA
ATTTGATAAAAAAAAAAAAAAAAAA

GH04035.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7560-RA 1368 CG7560-RA 250..1359 1..1110 5550 100 Plus
CG7560.a 1529 CG7560.a 250..1359 1..1110 5550 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11415937..11416468 1..532 2525 98.3 Plus
chr3L 24539361 chr3L 11416698..11417173 632..1107 2290 98.7 Plus
chr3L 24539361 chr3L 11416531..11416632 532..633 480 98 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:30:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:49:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11425158..11425689 1..532 2660 100 Plus
3L 28110227 3L 11425920..11426398 632..1110 2395 100 Plus
3L 28110227 3L 11425753..11425854 532..633 510 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11418258..11418789 1..532 2660 100 Plus
3L 28103327 3L 11419020..11419498 632..1110 2395 100 Plus
3L 28103327 3L 11418853..11418954 532..633 510 100 Plus
Blast to na_te.dros performed on 2019-03-16 23:49:26 has no hits.

GH04035.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:50:08 Download gff for GH04035.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11415937..11416468 1..532 98 -> Plus
chr3L 11416532..11416632 533..633 98 -> Plus
chr3L 11416700..11417173 634..1107 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:12:35 Download gff for GH04035.complete
Subject Subject Range Query Range Percent Splice Strand
CG7560-RA 1..1050 25..1074 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:40:51 Download gff for GH04035.complete
Subject Subject Range Query Range Percent Splice Strand
CG7560-RA 1..1050 25..1074 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:51:32 Download gff for GH04035.complete
Subject Subject Range Query Range Percent Splice Strand
CG7560-RA 1..1050 25..1074 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:19:06 Download gff for GH04035.complete
Subject Subject Range Query Range Percent Splice Strand
CG7560-RA 1..1050 25..1074 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:18 Download gff for GH04035.complete
Subject Subject Range Query Range Percent Splice Strand
CG7560-RA 1..1050 25..1074 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:46:37 Download gff for GH04035.complete
Subject Subject Range Query Range Percent Splice Strand
CG7560-RA 9..1115 1..1107 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:40:51 Download gff for GH04035.complete
Subject Subject Range Query Range Percent Splice Strand
CG7560-RA 9..1115 1..1107 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:32 Download gff for GH04035.complete
Subject Subject Range Query Range Percent Splice Strand
CG7560-RA 1..1107 1..1107 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:19:06 Download gff for GH04035.complete
Subject Subject Range Query Range Percent Splice Strand
CG7560-RA 9..1115 1..1107 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:18 Download gff for GH04035.complete
Subject Subject Range Query Range Percent Splice Strand
CG7560-RA 1..1107 1..1107 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:50:08 Download gff for GH04035.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11425158..11425689 1..532 100 -> Plus
3L 11425754..11425854 533..633 100 -> Plus
3L 11425922..11426395 634..1107 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:50:08 Download gff for GH04035.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11425158..11425689 1..532 100 -> Plus
3L 11425754..11425854 533..633 100 -> Plus
3L 11425922..11426395 634..1107 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:50:08 Download gff for GH04035.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11425158..11425689 1..532 100 -> Plus
3L 11425754..11425854 533..633 100 -> Plus
3L 11425922..11426395 634..1107 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:32 Download gff for GH04035.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11418854..11418954 533..633 100 -> Plus
arm_3L 11418258..11418789 1..532 100 -> Plus
arm_3L 11419022..11419495 634..1107 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:54:00 Download gff for GH04035.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11418258..11418789 1..532 100 -> Plus
3L 11418854..11418954 533..633 100 -> Plus
3L 11419022..11419495 634..1107 100   Plus

GH04035.hyp Sequence

Translation from 1 to 1073

> GH04035.hyp
LSERGSKSMHAIQVPAGGSSPGAASYIPCVTFAPDQNESVVTKQRIGTLV
AERTAQHRLFYGIEVMASDPSGRPTCLDFNHFLPLLPTFVSFVWLSQRYW
DVEPVGQVESLQMAQHLATRIPVLPHVSAYRMSRQRLDQFLALNFSSLLA
VRGDRVHEDQDFSISYPMVEQSIRQRGETISVCVGGYPEGYTSLGDIPQN
SAKNMEFLKAKIDAGADCIITQLCYRPEVIVQFVKDCRAAGISVPIVVGL
MSHESFRSYSMIEQITGVHLPDDLREQLDQLHSAHMKDMKSDQDLIRRFF
VSLTVRTIRNVLDADVGVWGFHFFTLNRFKSVQAVLQELRDLDLLKDSEK
DKKGYEK*

GH04035.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7560-PA 349 CG7560-PA 1..349 9..357 1809 100 Plus

GH04035.pep Sequence

Translation from 24 to 1073

> GH04035.pep
MHAIQVPAGGSSPGAASYIPCVTFAPDQNESVVTKQRIGTLVAERTAQHR
LFYGIEVMASDPSGRPTCLDFNHFLPLLPTFVSFVWLSQRYWDVEPVGQV
ESLQMAQHLATRIPVLPHVSAYRMSRQRLDQFLALNFSSLLAVRGDRVHE
DQDFSISYPMVEQSIRQRGETISVCVGGYPEGYTSLGDIPQNSAKNMEFL
KAKIDAGADCIITQLCYRPEVIVQFVKDCRAAGISVPIVVGLMSHESFRS
YSMIEQITGVHLPDDLREQLDQLHSAHMKDMKSDQDLIRRFFVSLTVRTI
RNVLDADVGVWGFHFFTLNRFKSVQAVLQELRDLDLLKDSEKDKKGYEK*

GH04035.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25261-PA 320 GF25261-PA 1..320 1..337 901 51 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15499-PA 349 GG15499-PA 1..349 1..349 1600 86.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16646-PA 387 GH16646-PA 48..381 1..343 715 40.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7560-PA 349 CG7560-PA 1..349 1..349 1809 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11604-PA 384 GI11604-PA 44..379 1..343 739 41.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22784-PA 371 GL22784-PA 270..367 234..339 269 50 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20440-PA 433 GA20440-PA 102..429 1..339 944 53.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25270-PA 349 GM25270-PA 1..349 1..349 1755 93.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14304-PA 349 GD14304-PA 1..349 1..349 1745 92.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11283-PA 390 GJ11283-PA 67..388 13..346 823 48.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17165-PA 318 GK17165-PA 3..318 7..338 768 44.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21809-PA 345 GE21809-PA 1..345 1..343 1599 86.7 Plus