Clone GH04039 Report

Search the DGRC for GH04039

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:40
Well:39
Vector:pOT2
Associated Gene/TranscriptCG3625-RB
Protein status:GH04039.pep: gold
Preliminary Size:1530
Sequenced Size:1343

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3625 2001-01-01 Release 2 assignment
CG3625 2001-10-10 Blastp of sequenced clone
CG3625 2003-01-01 Sim4 clustering to Release 3
CG3625 2008-04-29 Release 5.5 accounting
CG3625 2008-08-15 Release 5.9 accounting
CG3625 2008-12-18 5.12 accounting

Clone Sequence Records

GH04039.complete Sequence

1343 bp (1343 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060615

> GH04039.complete
CGACAGACCAGACCGGTTTGTTTGTGTTTTGGTGCCGTGAAAAATCAATC
GAGAGCAGAGCAGCTGCAGCAGGAAAATGGCATCCGTGCGAGGCAACTCC
GTGTACCAGGGCGTCTACGGGGCTCTGAGGACCCTGCTCCACCTGACGGC
AGTCGTGCAATTTGGCTACGGCATCTATTACGACTACAACTACGTGCAGT
TCCCCACCAGCGAGCCAGAGATGAGGATCCATCATCCCTGGGGGGGCAAA
TTCAAATACCTAACGTTCCTGGATGCGATAATTCAGGCACTGTACTATAT
TGTATCGCTGGTCAACGATTTCGTGGGCACTAATGAGCTGACACCCAAGA
AACCTCCGGCGGTTCGCAGGTTCAAGGACTGGCTGATGGCTACATTGGCC
TTTCCAGTGGCTATCAATGTGGGCGTGACCTTCTGGACACTGTACGCTAT
CGACAGGGAGCTAGTCTTCCCCAAGGTTCTGGACCCCGTGTTCCCCAGCT
GGCTCAACCACGTCCTGCACACCAACATAGTGGTTTTCATCATCCTGGAG
CTGTTCATCTCGTACAGGTCGTACCCAAAACGAAGCCAAGGACTCGCAGG
ACTGGCCATTTTCATGGGCGCCTACCTGGTTTGGATTCACGTGGTGAAGC
ACTACTCGGGTGTGTGGGTGTATCCAGTGCTCGAGGTTCTCCAGCTTCCG
CAACGCATCCTGTTTTTTGCGGCCGTCGTTGGATTCACGCTGTCACTTTA
CCTGCTGGGCGAGTTCCTCAACAATACCGTCTGGGCCAAGGAAGTGAAGT
TGGCCAAGCGCAAATCCAACTAGGAGGCTGTGACCCGTTTCTGTTCGATG
TAGTTGCGTTAATTAGCCACAAAATACAAATAGTGATTGACAGGTCTCGA
TTATACATTTTGCTCATATTGTTCGATCTTCTCAGCCAAAGAAATTTTTC
ATAAGTATGTAAAATCGTACTGCAAAGTTAACTGAAGAAGGCGTACAAAA
TATGTGAGAAATAATAAACGAAACTTGAAACATCAACTCGATAATATATT
TTCCAGTAATATTGAATTCGGAGTCTTTAATCATAATATGGAAACCCGTT
TGCTAATGATATTCATTATATTTTTATTACGCATACATTGTAACTGAAAT
TATAGCCGTAGTTTCCATTGAGCGCGCGCGTCTTTCGATAAGTTTACTAG
ACTAACCAAAATACAAAAATGCCTTCTCGATTAAACTTCTCATATCAAGC
ACACTGATTCAACGCCATCTTTGAATACCACTGTTATTCAATTCTAGTAC
CATAATAAAGCGATTAAACTCTTAAAAAAAAAAAAAAAAAAAA

GH04039.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3625-RB 1549 CG3625-RB 197..1519 1..1323 6615 100 Plus
CG3625-RA 1425 CG3625-RA 346..1395 274..1323 5250 100 Plus
CG3625.c 1967 CG3625.c 888..1937 274..1323 5250 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 283417..284249 1323..496 3975 99 Minus
chr2L 23010047 chr2L 285464..285745 282..1 1380 99.3 Minus
chr2L 23010047 chr2L 284784..285005 498..277 1095 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:30:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 283386..284213 1323..496 4140 100 Minus
2L 23513712 2L 285428..285709 282..1 1395 99.6 Minus
2L 23513712 2L 284748..284969 498..277 1110 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 283386..284213 1323..496 4140 100 Minus
2L 23513712 2L 285428..285709 282..1 1395 99.6 Minus
2L 23513712 2L 284748..284969 498..277 1110 100 Minus
Blast to na_te.dros performed 2019-03-16 10:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 1684..1814 931..1068 123 60.7 Plus

GH04039.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:03:17 Download gff for GH04039.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 284784..285004 278..498 99 <- Minus
chr2L 283417..284246 499..1323 99 <- Minus
chr2L 285469..285745 1..277 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:12:39 Download gff for GH04039.complete
Subject Subject Range Query Range Percent Splice Strand
CG3625-RB 1..747 77..823 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:55:10 Download gff for GH04039.complete
Subject Subject Range Query Range Percent Splice Strand
CG3625-RB 1..747 77..823 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:54:42 Download gff for GH04039.complete
Subject Subject Range Query Range Percent Splice Strand
CG3625-RB 1..747 77..823 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:24:15 Download gff for GH04039.complete
Subject Subject Range Query Range Percent Splice Strand
CG3625-RB 1..747 77..823 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:52:46 Download gff for GH04039.complete
Subject Subject Range Query Range Percent Splice Strand
CG3625-RB 1..747 77..823 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:40:50 Download gff for GH04039.complete
Subject Subject Range Query Range Percent Splice Strand
CG3625-RB 68..1390 1..1323 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:55:10 Download gff for GH04039.complete
Subject Subject Range Query Range Percent Splice Strand
CG3625-RB 68..1390 1..1323 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:42 Download gff for GH04039.complete
Subject Subject Range Query Range Percent Splice Strand
CG3625-RB 18..1340 1..1323 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:24:15 Download gff for GH04039.complete
Subject Subject Range Query Range Percent Splice Strand
CG3625-RB 68..1390 1..1323 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:52:46 Download gff for GH04039.complete
Subject Subject Range Query Range Percent Splice Strand
CG3625-RB 18..1340 1..1323 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:03:17 Download gff for GH04039.complete
Subject Subject Range Query Range Percent Splice Strand
2L 283386..284210 499..1323 100 <- Minus
2L 284748..284968 278..498 100 <- Minus
2L 285433..285709 1..277 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:03:17 Download gff for GH04039.complete
Subject Subject Range Query Range Percent Splice Strand
2L 283386..284210 499..1323 100 <- Minus
2L 284748..284968 278..498 100 <- Minus
2L 285433..285709 1..277 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:03:17 Download gff for GH04039.complete
Subject Subject Range Query Range Percent Splice Strand
2L 283386..284210 499..1323 100 <- Minus
2L 284748..284968 278..498 100 <- Minus
2L 285433..285709 1..277 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:42 Download gff for GH04039.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 283386..284210 499..1323 100 <- Minus
arm_2L 284748..284968 278..498 100 <- Minus
arm_2L 285433..285709 1..277 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:01:25 Download gff for GH04039.complete
Subject Subject Range Query Range Percent Splice Strand
2L 283386..284210 499..1323 100 <- Minus
2L 284748..284968 278..498 100 <- Minus
2L 285433..285709 1..277 100   Minus

GH04039.hyp Sequence

Translation from 76 to 822

> GH04039.hyp
MASVRGNSVYQGVYGALRTLLHLTAVVQFGYGIYYDYNYVQFPTSEPEMR
IHHPWGGKFKYLTFLDAIIQALYYIVSLVNDFVGTNELTPKKPPAVRRFK
DWLMATLAFPVAINVGVTFWTLYAIDRELVFPKVLDPVFPSWLNHVLHTN
IVVFIILELFISYRSYPKRSQGLAGLAIFMGAYLVWIHVVKHYSGVWVYP
VLEVLQLPQRILFFAAVVGFTLSLYLLGEFLNNTVWAKEVKLAKRKSN*

GH04039.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3625-PB 248 CG3625-PB 1..248 1..248 1308 100 Plus
CG3625-PA 245 CG3625-PA 8..245 3..248 1049 84.1 Plus
CG3625-PE 247 CG3625-PE 14..247 19..248 998 84.2 Plus
CG3625-PC 247 CG3625-PC 14..247 19..248 998 84.2 Plus
CG11601-PC 275 CG11601-PC 29..270 7..246 638 48.4 Plus

GH04039.pep Sequence

Translation from 76 to 822

> GH04039.pep
MASVRGNSVYQGVYGALRTLLHLTAVVQFGYGIYYDYNYVQFPTSEPEMR
IHHPWGGKFKYLTFLDAIIQALYYIVSLVNDFVGTNELTPKKPPAVRRFK
DWLMATLAFPVAINVGVTFWTLYAIDRELVFPKVLDPVFPSWLNHVLHTN
IVVFIILELFISYRSYPKRSQGLAGLAIFMGAYLVWIHVVKHYSGVWVYP
VLEVLQLPQRILFFAAVVGFTLSLYLLGEFLNNTVWAKEVKLAKRKSN*

GH04039.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24926-PA 250 GF24926-PA 1..250 1..248 1200 92 Plus
Dana\GF24937-PA 275 GF24937-PA 29..271 7..247 640 49 Plus
Dana\GF24553-PA 310 GF24553-PA 14..227 18..239 536 45 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24663-PA 248 GG24663-PA 1..248 1..248 1274 97.6 Plus
Dere\GG24665-PA 275 GG24665-PA 29..271 7..247 623 48.2 Plus
Dere\GG13922-PA 236 GG13922-PA 11..233 18..248 512 42.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10220-PA 252 GH10220-PA 9..252 7..248 1033 77.5 Plus
Dgri\GH11507-PA 277 GH11507-PA 29..273 7..247 571 48.6 Plus
Dgri\GH23361-PA 129 GH23361-PA 9..129 18..149 270 36.4 Plus
Dgri\GH14847-PA 129 GH14847-PA 9..129 18..149 265 36.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3625-PB 248 CG3625-PB 1..248 1..248 1308 100 Plus
CG3625-PA 245 CG3625-PA 8..245 3..248 1049 84.1 Plus
CG3625-PE 247 CG3625-PE 14..247 19..248 998 84.2 Plus
CG3625-PC 247 CG3625-PC 14..247 19..248 998 84.2 Plus
CG11601-PC 275 CG11601-PC 29..270 7..246 638 48.4 Plus
CG11601-PB 275 CG11601-PB 29..270 7..246 638 48.4 Plus
CG11601-PA 275 CG11601-PA 29..270 7..246 638 48.4 Plus
CG6149-PB 234 CG6149-PB 11..223 18..238 527 43.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15038-PA 252 GI15038-PA 4..252 2..248 1050 77.5 Plus
Dmoj\GI17003-PA 275 GI17003-PA 29..270 7..246 627 47.1 Plus
Dmoj\GI13700-PA 223 GI13700-PA 7..218 20..239 358 38.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25826-PA 249 GL25826-PA 3..249 2..248 1177 87.9 Plus
Dper\GL25827-PA 114 GL25827-PA 3..99 141..237 276 50.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17568-PA 249 GA17568-PA 3..249 2..248 1183 88.7 Plus
Dpse\GA11092-PA 277 GA11092-PA 29..260 7..237 611 47.4 Plus
Dpse\GA19393-PA 239 GA19393-PA 3..234 5..246 522 43.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16682-PA 245 GM16682-PA 17..245 12..248 1028 85.7 Plus
Dsec\GM13272-PA 141 GM13272-PA 1..140 1..140 738 99.3 Plus
Dsec\GM16683-PA 275 GM16683-PA 29..271 7..247 624 48.2 Plus
Dsec\GM24755-PA 296 GM24755-PA 71..293 18..248 483 42 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22970-PA 245 GD22970-PA 17..245 12..248 1028 85.7 Plus
Dsim\GD22971-PA 275 GD22971-PA 29..271 7..247 624 48.2 Plus
Dsim\GD12806-PA 296 GD12806-PA 71..293 18..248 516 42.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17242-PA 251 GJ17242-PA 1..251 1..248 1065 78.5 Plus
Dvir\GJ24281-PA 275 GJ24281-PA 29..271 7..247 646 49 Plus
Dvir\GJ14040-PA 228 GJ14040-PA 13..224 17..236 529 43.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14825-PA 257 GK14825-PA 7..257 2..248 1110 82.5 Plus
Dwil\GK14826-PA 275 GK14826-PA 29..271 7..247 629 49.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16272-PA 248 GE16272-PA 1..248 1..248 1277 97.6 Plus
Dyak\GE16283-PA 275 GE16283-PA 29..271 7..247 618 47.8 Plus
Dyak\GE20218-PA 229 GE20218-PA 11..217 18..232 468 43.7 Plus