Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
GH04046.complete Sequence
2073 bp (2073 high quality bases) assembled on 2003-02-22
GenBank Submission: AY070833
> GH04046.complete
CAGTCGTGTTTTTTTGTTGTGCCCGTTCGCGCGTGTCCTGCTGGCTGCTA
AATGCCAGCTGCCTCCTGTCCGTTGGCAATCCGTCGTCCGACAGCCGAGC
TCGGGAGCTGCAGTTCGTCCGCGCCCATAGACCATATGAATTTCTACCAA
TTTTCTACTCATCGGTGTAGCGCTAATAACAAATAATAATACCAAATTCA
GGCAGATATGCAAACGCGCTTCGCAATAAAGGGGCGAGTTGGCAAAGAAA
ACTTAGGACTAACGCCCACCCGAGAAGATGTTTGTGTGTGCAAGGAATGC
GTTTAATAATTGATTCGGTCCACAACTGGGCTGCGGCGCAGGGAAATTCG
TATCGTTTATAAATAATGCAAAAATTACAGTGCAAATGTAATATGGAATT
ACAATCACAACCGTATCAAGAAAATTTTAAATGGAGCCGCAGCAAAGAAC
ACAAATAAAACATTCATATGCAAAATAAAATTTGAGTCAAACAACCGAAC
GCCATGAATTGGAAAACTGCAACAAATGTGATATGATCAACTAATAAAAT
ATAAATAAAGACACTTTTAGTATAATCCAAAACAACGTTAATTATGCCTC
GGAAAATGGCAACAGCAGCAACACAGAACGATAAATCAAAATGAGCAAAT
ATTGTCTGGGCTTGACTTTTATATAGCTAGCAATAATGACATTTAGTGCT
ACAGCAAACGAACAGGAAAAAACAAAATATAACGAGAAAGCTTTAAATAT
TTTTTCTACTTACTAAAAACTTAAATTAACTGCACCAAATGTGATCGAAC
CGAAATAATATATATTGAACAACCAATAAGAGTTACTTCAACAATAAAAT
TCGACAACGACATTGCCTTCTCTCATTGTAGCCTAAACGAAATTAACTCT
AAAACTCAACTTCGTAGTCACTAACGTTAATTACTAGCCTAAGCCGATAA
TTGAAACTAAAACCAAATGAATAAGTTGATCAACTTATAACTAAACTCAA
AGACTTTTCTACGTGCAACAAGGAAAAATACAATTGAAATTGATTAAAAT
AGATAATGCATAGACTAAGTCGAGCAATCACTTACATTCTAAACGCAGTG
CGCCTACGTTAACGCTGCGCTAACGAAAACGGTCAATTCATAGATATAAA
TAAATGTTTATAGCTTTCAATGCCAAAATTCAAACGAAAATGAAATCTCC
TACGAATACAAAGCCGCGTGACGTGAACGCTACGTAGCAAAAGGCCAGGC
GTTGCGTTACGTCGCGCTACGTAACGACATAACCACAGTCGAGTCCACAT
CCGATCATCCGATTCCCGTACTTCACGCCGTTTATGATCCAGGATTCGCC
GCAGGAGCGTCGCAGGACGAGTCGCCGGCGCAGTCAGAAGCATCACCGCT
GGAAAAAAACACAGCCTATACGAAACACACAGTGCAACAGCAACAGCAAC
AACAGCAACACAACCAACCAACCAACCAACAAGAACGACTTAACGGAGCT
AGAAAAGCAGCCGACCACTGGCGATCAACGCAGCCCATCCTCAGCCCGCC
ACTCAACTGCGCCAGCCCTTCGACTTCGAGGCTGACGCAGTTTTTCAAAC
GCCACAGCTACAGAAAAACCCCCCAAAAAAACCAACCACCACAAGAACTA
CAGCACTACACATAGGGATCTGTTTTGAAAAAGAACAGATACCAGAATTA
ACATAAATATTACTCTTTGCTTCTATTTCTATACTCCTCCTCTTTGTGCC
TATCAGTACGTTCTCGTAGTTGTTGAGAAAGTTGAGAAAGTAACCGTAAC
CGTAATCGGACTGAATGCACGCCTCTTTTTTGATGCTGCCCTCGACGATC
GACATAACGCGCAGACTTCGTGACATTTAGTTTTGGACGTTATTAAGCTC
CTAAACCTGTATTCTGTGTCATCCCATTGATTTCGAACTGTGAACGCAAC
CCCAACGTATACGCAATCACTGACGTTACGCATACGCACCGTTGTACAAC
GGACAACTGACGTATAAAACATAAATACAAGAACTAAGAACTTTAACCGT
TAACCAAAAAAAAAAAAAAAAAA
GH04046.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 18:19:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31846-RA | 2072 | CG31846-RA | 1..2069 | 1..2070 | 10280 | 99.8 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:36:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 13482129..13483764 | 419..2055 | 8135 | 99.9 | Plus |
chr2L | 23010047 | chr2L | 13460457..13460884 | 1..420 | 1985 | 98.1 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:30:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:36:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13483445..13485095 | 419..2070 | 8180 | 99.8 | Plus |
2L | 23513712 | 2L | 13461781..13462200 | 1..420 | 2100 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:58:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13483445..13485095 | 419..2070 | 8190 | 99.8 | Plus |
2L | 23513712 | 2L | 13461781..13462200 | 1..420 | 2100 | 100 | Plus |
Blast to na_te.dros performed 2019-03-15 23:36:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 1639..1822 | 448..640 | 149 | 57.5 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 3885..3929 | 1020..1064 | 117 | 73.3 | Plus |
Ivk | 5402 | Ivk IVK 5402bp | 2522..2617 | 153..247 | 115 | 64.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1751..1795 | 1017..1056 | 115 | 77.8 | Plus |
GH04046.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:37:11 Download gff for
GH04046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 13460457..13460884 | 1..420 | 98 | -> | Plus |
chr2L | 13482131..13483764 | 421..2055 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:58:39 Download gff for
GH04046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31846-RA | 1..252 | 1334..1585 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:40:44 Download gff for
GH04046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31846-RA | 1..252 | 1334..1585 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:58:38 Download gff for
GH04046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31846-RA | 1..2054 | 1..2055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:06:54 Download gff for
GH04046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42784-RI | 8..2061 | 1..2055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:40:44 Download gff for
GH04046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31846-RA | 1..2054 | 1..2055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:41:58 Download gff for
GH04046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42784-RI | 8..2061 | 1..2055 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:37:11 Download gff for
GH04046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13461781..13462200 | 1..420 | 100 | -> | Plus |
2L | 13483447..13485080 | 421..2055 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:37:11 Download gff for
GH04046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13461781..13462200 | 1..420 | 100 | -> | Plus |
2L | 13483447..13485080 | 421..2055 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:37:11 Download gff for
GH04046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13461781..13462200 | 1..420 | 100 | -> | Plus |
2L | 13483447..13485080 | 421..2055 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:06:54 Download gff for
GH04046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13461781..13462200 | 1..420 | 100 | -> | Plus |
arm_2L | 13483447..13485080 | 421..2055 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:06:54 Download gff for
GH04046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13461781..13462200 | 1..420 | 100 | -> | Plus |
arm_2L | 13483447..13485080 | 421..2055 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:10:46 Download gff for
GH04046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13461781..13462200 | 1..420 | 100 | -> | Plus |
2L | 13483447..13485080 | 421..2055 | 99 | | Plus |
GH04046.pep Sequence
Translation from 1333 to 1584
> GH04046.pep
MIQDSPQERRRTSRRRSQKHHRWKKTQPIRNTQCNSNSNNSNTTNQPTNK
NDLTELEKQPTTGDQRSPSSARHSTAPALRLRG*
GH04046.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF23283-PA | 94 | GF23283-PA | 25..91 | 11..78 | 161 | 66.2 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:37:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM19532-PA | 49 | GM19532-PA | 1..34 | 1..34 | 130 | 100 | Plus |
GH04046.hyp Sequence
Translation from 1333 to 1584
> GH04046.hyp
MIQDSPQERRRTSRRRSQKHHRWKKTQPIRNTQCNSNSNNSNTTNQPTNK
NDLTELEKQPTTGDQRSPSSARHSTAPALRLRG*
Sequence GH04046.hyp has no blast hits.