Clone GH04046 Report

Search the DGRC for GH04046

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:40
Well:46
Vector:pOT2
Associated Gene/TranscriptCG31846-RA
Protein status:GH04046.pep: validated full length
Preliminary Size:2230
Sequenced Size:2073

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16850 2001-01-01 Release 2 assignment
CG31846 2003-01-01 Sim4 clustering to Release 3
CG31846 2003-02-22 Blastp of sequenced clone
CG31846 2008-04-29 Release 5.5 accounting
CG31846 2008-08-15 Release 5.9 accounting
CG31846 2008-12-18 5.12 accounting

Clone Sequence Records

GH04046.complete Sequence

2073 bp (2073 high quality bases) assembled on 2003-02-22

GenBank Submission: AY070833

> GH04046.complete
CAGTCGTGTTTTTTTGTTGTGCCCGTTCGCGCGTGTCCTGCTGGCTGCTA
AATGCCAGCTGCCTCCTGTCCGTTGGCAATCCGTCGTCCGACAGCCGAGC
TCGGGAGCTGCAGTTCGTCCGCGCCCATAGACCATATGAATTTCTACCAA
TTTTCTACTCATCGGTGTAGCGCTAATAACAAATAATAATACCAAATTCA
GGCAGATATGCAAACGCGCTTCGCAATAAAGGGGCGAGTTGGCAAAGAAA
ACTTAGGACTAACGCCCACCCGAGAAGATGTTTGTGTGTGCAAGGAATGC
GTTTAATAATTGATTCGGTCCACAACTGGGCTGCGGCGCAGGGAAATTCG
TATCGTTTATAAATAATGCAAAAATTACAGTGCAAATGTAATATGGAATT
ACAATCACAACCGTATCAAGAAAATTTTAAATGGAGCCGCAGCAAAGAAC
ACAAATAAAACATTCATATGCAAAATAAAATTTGAGTCAAACAACCGAAC
GCCATGAATTGGAAAACTGCAACAAATGTGATATGATCAACTAATAAAAT
ATAAATAAAGACACTTTTAGTATAATCCAAAACAACGTTAATTATGCCTC
GGAAAATGGCAACAGCAGCAACACAGAACGATAAATCAAAATGAGCAAAT
ATTGTCTGGGCTTGACTTTTATATAGCTAGCAATAATGACATTTAGTGCT
ACAGCAAACGAACAGGAAAAAACAAAATATAACGAGAAAGCTTTAAATAT
TTTTTCTACTTACTAAAAACTTAAATTAACTGCACCAAATGTGATCGAAC
CGAAATAATATATATTGAACAACCAATAAGAGTTACTTCAACAATAAAAT
TCGACAACGACATTGCCTTCTCTCATTGTAGCCTAAACGAAATTAACTCT
AAAACTCAACTTCGTAGTCACTAACGTTAATTACTAGCCTAAGCCGATAA
TTGAAACTAAAACCAAATGAATAAGTTGATCAACTTATAACTAAACTCAA
AGACTTTTCTACGTGCAACAAGGAAAAATACAATTGAAATTGATTAAAAT
AGATAATGCATAGACTAAGTCGAGCAATCACTTACATTCTAAACGCAGTG
CGCCTACGTTAACGCTGCGCTAACGAAAACGGTCAATTCATAGATATAAA
TAAATGTTTATAGCTTTCAATGCCAAAATTCAAACGAAAATGAAATCTCC
TACGAATACAAAGCCGCGTGACGTGAACGCTACGTAGCAAAAGGCCAGGC
GTTGCGTTACGTCGCGCTACGTAACGACATAACCACAGTCGAGTCCACAT
CCGATCATCCGATTCCCGTACTTCACGCCGTTTATGATCCAGGATTCGCC
GCAGGAGCGTCGCAGGACGAGTCGCCGGCGCAGTCAGAAGCATCACCGCT
GGAAAAAAACACAGCCTATACGAAACACACAGTGCAACAGCAACAGCAAC
AACAGCAACACAACCAACCAACCAACCAACAAGAACGACTTAACGGAGCT
AGAAAAGCAGCCGACCACTGGCGATCAACGCAGCCCATCCTCAGCCCGCC
ACTCAACTGCGCCAGCCCTTCGACTTCGAGGCTGACGCAGTTTTTCAAAC
GCCACAGCTACAGAAAAACCCCCCAAAAAAACCAACCACCACAAGAACTA
CAGCACTACACATAGGGATCTGTTTTGAAAAAGAACAGATACCAGAATTA
ACATAAATATTACTCTTTGCTTCTATTTCTATACTCCTCCTCTTTGTGCC
TATCAGTACGTTCTCGTAGTTGTTGAGAAAGTTGAGAAAGTAACCGTAAC
CGTAATCGGACTGAATGCACGCCTCTTTTTTGATGCTGCCCTCGACGATC
GACATAACGCGCAGACTTCGTGACATTTAGTTTTGGACGTTATTAAGCTC
CTAAACCTGTATTCTGTGTCATCCCATTGATTTCGAACTGTGAACGCAAC
CCCAACGTATACGCAATCACTGACGTTACGCATACGCACCGTTGTACAAC
GGACAACTGACGTATAAAACATAAATACAAGAACTAAGAACTTTAACCGT
TAACCAAAAAAAAAAAAAAAAAA

GH04046.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG31846-RA 2072 CG31846-RA 1..2069 1..2070 10280 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13482129..13483764 419..2055 8135 99.9 Plus
chr2L 23010047 chr2L 13460457..13460884 1..420 1985 98.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:30:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13483445..13485095 419..2070 8180 99.8 Plus
2L 23513712 2L 13461781..13462200 1..420 2100 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13483445..13485095 419..2070 8190 99.8 Plus
2L 23513712 2L 13461781..13462200 1..420 2100 100 Plus
Blast to na_te.dros performed 2019-03-15 23:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 1639..1822 448..640 149 57.5 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 3885..3929 1020..1064 117 73.3 Plus
Ivk 5402 Ivk IVK 5402bp 2522..2617 153..247 115 64.3 Plus
roo 9092 roo DM_ROO 9092bp 1751..1795 1017..1056 115 77.8 Plus

GH04046.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:37:11 Download gff for GH04046.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13460457..13460884 1..420 98 -> Plus
chr2L 13482131..13483764 421..2055 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:58:39 Download gff for GH04046.complete
Subject Subject Range Query Range Percent Splice Strand
CG31846-RA 1..252 1334..1585 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:40:44 Download gff for GH04046.complete
Subject Subject Range Query Range Percent Splice Strand
CG31846-RA 1..252 1334..1585 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:58:38 Download gff for GH04046.complete
Subject Subject Range Query Range Percent Splice Strand
CG31846-RA 1..2054 1..2055 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:06:54 Download gff for GH04046.complete
Subject Subject Range Query Range Percent Splice Strand
CG42784-RI 8..2061 1..2055 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:40:44 Download gff for GH04046.complete
Subject Subject Range Query Range Percent Splice Strand
CG31846-RA 1..2054 1..2055 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:41:58 Download gff for GH04046.complete
Subject Subject Range Query Range Percent Splice Strand
CG42784-RI 8..2061 1..2055 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:37:11 Download gff for GH04046.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13461781..13462200 1..420 100 -> Plus
2L 13483447..13485080 421..2055 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:37:11 Download gff for GH04046.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13461781..13462200 1..420 100 -> Plus
2L 13483447..13485080 421..2055 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:37:11 Download gff for GH04046.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13461781..13462200 1..420 100 -> Plus
2L 13483447..13485080 421..2055 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:06:54 Download gff for GH04046.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13461781..13462200 1..420 100 -> Plus
arm_2L 13483447..13485080 421..2055 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:06:54 Download gff for GH04046.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13461781..13462200 1..420 100 -> Plus
arm_2L 13483447..13485080 421..2055 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:10:46 Download gff for GH04046.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13461781..13462200 1..420 100 -> Plus
2L 13483447..13485080 421..2055 99   Plus

GH04046.pep Sequence

Translation from 1333 to 1584

> GH04046.pep
MIQDSPQERRRTSRRRSQKHHRWKKTQPIRNTQCNSNSNNSNTTNQPTNK
NDLTELEKQPTTGDQRSPSSARHSTAPALRLRG*

GH04046.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23283-PA 94 GF23283-PA 25..91 11..78 161 66.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19532-PA 49 GM19532-PA 1..34 1..34 130 100 Plus

GH04046.hyp Sequence

Translation from 1333 to 1584

> GH04046.hyp
MIQDSPQERRRTSRRRSQKHHRWKKTQPIRNTQCNSNSNNSNTTNQPTNK
NDLTELEKQPTTGDQRSPSSARHSTAPALRLRG*
Sequence GH04046.hyp has no blast hits.