Clone GH04054 Report

Search the DGRC for GH04054

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:40
Well:54
Vector:pOT2
Associated Gene/TranscriptCG6465-RA
Protein status:GH04054.pep: gold
Preliminary Size:1441
Sequenced Size:1317

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6465 2001-01-01 Release 2 assignment
CG6465 2001-07-04 Blastp of sequenced clone
CG6465 2003-01-01 Sim4 clustering to Release 3
CG6465 2008-04-29 Release 5.5 accounting
CG6465 2008-08-15 Release 5.9 accounting
CG6465 2008-12-18 5.12 accounting

Clone Sequence Records

GH04054.complete Sequence

1317 bp (1317 high quality bases) assembled on 2001-07-04

GenBank Submission: AY047532

> GH04054.complete
TAGAAGTGAAATGGCCACCAGCAAGTGGGAATCCGATGAGGAGATACAGT
ACTTTCGCGAGTATCTGCGCATCCCAAGTGTCCATCCCGATCCGGACTAT
GCACCATGCGTCGAATTTCTCAGACGACAGGCAAATCTGATGGATCTGCC
AATGAAGGTGTATTACCCGGCAAATGAACAGAATCCCGTAGTGGTTTTGA
CATGGAAGGGACTCAATCCCGAGTTGCCCAGCATTCTGCTGAACTCCCAC
ATGGACGTGGTTCCCGTATTTCCAGAAAACTGGACTCACCCGCCATTTGG
AGCCGACATCGATGAGGAGGGTCGCATTTTTGCCAGGGGAACACAAGATA
TGAAGTCCGTGGGAATGCAGCATCTAGCCGCAGTTAGAGCGCTCAAGAGA
AGTGGAGCGAAATTCAAACGAACTATCCACATTTCCTTTGTGGCGGATGA
GGAAATGGGCGGTCGTTATGGCATGAGACCTTTTGTGCCAACTGAAGATT
TCCGTGCTCTTAATGTGGGATTTGCAATGGACGAGGGATTGGCTTCACCC
GATGAGCAGCTGCCTCTTTTCTATGCAGAACGAGCAGTTTGGCGTGTATA
TTTCAACATCAGTGGGACTGCTGGTCATGGATCGCTTTTGCTGCCCAATA
CTGCTGGTGAAAAACTGAACTATATAGTCGGAAAGATGATGGAGTTTCGT
AGGAGTCAGGTTCAAAGATTGCAGAATAATCCAGAGTTGGTCATTGGCGA
TGTAACGACCATTAATTTGACCAAACTCGGTGGCGGAGTTCAGAGCAATG
TGGTGCCTCCCTTGCTAATGGTCTGCTTCGATTGTCGTTTGGCTCTAGAT
GTGGACTTTGAGGAGTTTGAGGCTAACCTCCACAAATGGTGTGCCGACGT
GGGTGGTGGCATCGAGATCACTTACGAACAGAAGCAACCTAAAGTCCCGC
CCACCGCCATCGATGGGAGTAATCCCTTCTGGCTTGCTTTCAAGAAAGCT
ACCGATGAGATGCACATATCCATCAAACCGCAAATATTTACCGGAGGAAC
TGATAGCAGATACATTCGTGCCGTTGGCATCCCAGCTTTGGGCTTCTCAC
CCATGAATAATACACCTGTATTGCTCCACGATCACGATGAGTTCATTCAG
GCGGATATCTATTTGCGCGGTGTGCAGATATTTCAGAAAATAATTAGCAA
CATTGCGAATGTCTAGTTAATACCTTGTATACGCTGTATTTTTGTTTGTT
GTATATGATAAAAGTTATAAGATAAATAAACTCCTGAAAATAATGGAAAA
AAAAAAAAAAAAAAAAA

GH04054.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6465-RA 1703 CG6465-RA 342..1638 1..1297 6485 100 Plus
CG6465.c 1502 CG6465.c 200..1496 1..1297 6485 100 Plus
CG6465.b 1357 CG6465.b 161..1357 101..1297 5985 100 Plus
CG6465.b 1357 CG6465.b 39..139 1..101 505 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6502191..6502536 446..101 1655 98.6 Minus
chr3R 27901430 chr3R 6501101..6501385 1296..1012 1425 100 Minus
chr3R 27901430 chr3R 6501636..6501918 876..594 1400 99.6 Minus
chr3R 27901430 chr3R 6501981..6502130 595..446 720 98.7 Minus
chr3R 27901430 chr3R 6501443..6501577 1012..878 660 99.3 Minus
chr3R 27901430 chr3R 6502611..6502711 101..1 505 100 Minus
chr3R 27901430 chr3R 18916035..18916130 601..696 240 83.3 Plus
chr3R 27901430 chr3R 18917395..18917519 240..364 190 76.8 Plus
chr3R 27901430 chr3R 18921900..18921964 609..673 190 86.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:30:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10676650..10676995 446..101 1730 100 Minus
3R 32079331 3R 10675559..10675844 1297..1012 1430 100 Minus
3R 32079331 3R 10676094..10676377 877..594 1420 100 Minus
3R 32079331 3R 10676440..10676589 595..446 750 100 Minus
3R 32079331 3R 10675902..10676036 1012..878 675 100 Minus
3R 32079331 3R 10677070..10677170 101..1 505 100 Minus
3R 32079331 3R 23092608..23092703 601..696 240 83.3 Plus
3R 32079331 3R 23093968..23094092 240..364 190 76.8 Plus
3R 32079331 3R 23098473..23098537 609..673 190 86.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10417481..10417826 446..101 1730 100 Minus
3R 31820162 3R 10416390..10416675 1297..1012 1430 100 Minus
3R 31820162 3R 10416925..10417208 877..594 1420 100 Minus
3R 31820162 3R 10417271..10417420 595..446 750 100 Minus
3R 31820162 3R 10416733..10416867 1012..878 675 100 Minus
3R 31820162 3R 10417901..10418001 101..1 505 100 Minus
3R 31820162 3R 22833439..22833534 601..696 240 83.3 Plus
3R 31820162 3R 22839304..22839368 609..673 190 86.1 Plus
3R 31820162 3R 22834799..22834868 240..309 170 82.8 Plus
3R 31820162 3R 22836851..22836972 242..363 145 74.5 Plus
Blast to na_te.dros performed on 2019-03-15 15:38:45 has no hits.

GH04054.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:39:32 Download gff for GH04054.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6501101..6501385 1012..1296 100 <- Minus
chr3R 6501444..6501577 878..1011 99 <- Minus
chr3R 6501635..6501918 594..877 99 <- Minus
chr3R 6501983..6502129 447..593 98 <- Minus
chr3R 6502191..6502535 102..446 98 <- Minus
chr3R 6502611..6502711 1..101 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:12:46 Download gff for GH04054.complete
Subject Subject Range Query Range Percent Splice Strand
CG6465-RA 1..1206 11..1216 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:29:50 Download gff for GH04054.complete
Subject Subject Range Query Range Percent Splice Strand
CG6465-RA 1..1206 11..1216 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:35:01 Download gff for GH04054.complete
Subject Subject Range Query Range Percent Splice Strand
CG6465-RA 1..1206 11..1216 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:03:16 Download gff for GH04054.complete
Subject Subject Range Query Range Percent Splice Strand
CG6465-RA 1..1206 11..1216 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:11:43 Download gff for GH04054.complete
Subject Subject Range Query Range Percent Splice Strand
CG6465-RA 1..1206 11..1216 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:30:25 Download gff for GH04054.complete
Subject Subject Range Query Range Percent Splice Strand
CG6465-RA 1..1296 1..1296 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:29:50 Download gff for GH04054.complete
Subject Subject Range Query Range Percent Splice Strand
CG6465-RA 1..1296 1..1296 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:35:01 Download gff for GH04054.complete
Subject Subject Range Query Range Percent Splice Strand
CG6465-RA 82..1377 1..1296 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:03:16 Download gff for GH04054.complete
Subject Subject Range Query Range Percent Splice Strand
CG6465-RA 1..1296 1..1296 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:11:43 Download gff for GH04054.complete
Subject Subject Range Query Range Percent Splice Strand
CG6465-RA 82..1377 1..1296 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:39:32 Download gff for GH04054.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10675903..10676036 878..1011 100 <- Minus
3R 10675560..10675844 1012..1296 100 <- Minus
3R 10676094..10676377 594..877 100 <- Minus
3R 10676442..10676588 447..593 100 <- Minus
3R 10676650..10676994 102..446 100 <- Minus
3R 10677070..10677170 1..101 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:39:32 Download gff for GH04054.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10675903..10676036 878..1011 100 <- Minus
3R 10675560..10675844 1012..1296 100 <- Minus
3R 10676094..10676377 594..877 100 <- Minus
3R 10676442..10676588 447..593 100 <- Minus
3R 10676650..10676994 102..446 100 <- Minus
3R 10677070..10677170 1..101 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:39:32 Download gff for GH04054.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10675903..10676036 878..1011 100 <- Minus
3R 10675560..10675844 1012..1296 100 <- Minus
3R 10676094..10676377 594..877 100 <- Minus
3R 10676442..10676588 447..593 100 <- Minus
3R 10676650..10676994 102..446 100 <- Minus
3R 10677070..10677170 1..101 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:35:01 Download gff for GH04054.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6501282..6501566 1012..1296 100 <- Minus
arm_3R 6501625..6501758 878..1011 100 <- Minus
arm_3R 6501816..6502099 594..877 100 <- Minus
arm_3R 6502164..6502310 447..593 100 <- Minus
arm_3R 6502372..6502716 102..446 100 <- Minus
arm_3R 6502792..6502892 1..101 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:41:18 Download gff for GH04054.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10416391..10416675 1012..1296 100 <- Minus
3R 10416734..10416867 878..1011 100 <- Minus
3R 10416925..10417208 594..877 100 <- Minus
3R 10417273..10417419 447..593 100 <- Minus
3R 10417481..10417825 102..446 100 <- Minus
3R 10417901..10418001 1..101 100   Minus

GH04054.hyp Sequence

Translation from 1 to 1215

> GH04054.hyp
RSEMATSKWESDEEIQYFREYLRIPSVHPDPDYAPCVEFLRRQANLMDLP
MKVYYPANEQNPVVVLTWKGLNPELPSILLNSHMDVVPVFPENWTHPPFG
ADIDEEGRIFARGTQDMKSVGMQHLAAVRALKRSGAKFKRTIHISFVADE
EMGGRYGMRPFVPTEDFRALNVGFAMDEGLASPDEQLPLFYAERAVWRVY
FNISGTAGHGSLLLPNTAGEKLNYIVGKMMEFRRSQVQRLQNNPELVIGD
VTTINLTKLGGGVQSNVVPPLLMVCFDCRLALDVDFEEFEANLHKWCADV
GGGIEITYEQKQPKVPPTAIDGSNPFWLAFKKATDEMHISIKPQIFTGGT
DSRYIRAVGIPALGFSPMNNTPVLLHDHDEFIQADIYLRGVQIFQKIISN
IANV*

GH04054.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6465-PA 401 CG6465-PA 1..401 4..404 2128 100 Plus
CG6726-PC 401 CG6726-PC 1..400 4..403 1409 64 Plus
CG6726-PA 401 CG6726-PA 1..400 4..403 1409 64 Plus
CG6726-PB 401 CG6726-PB 1..400 4..403 1409 64 Plus
CG17109-PB 400 CG17109-PB 1..400 4..404 1300 60.3 Plus

GH04054.pep Sequence

Translation from 10 to 1215

> GH04054.pep
MATSKWESDEEIQYFREYLRIPSVHPDPDYAPCVEFLRRQANLMDLPMKV
YYPANEQNPVVVLTWKGLNPELPSILLNSHMDVVPVFPENWTHPPFGADI
DEEGRIFARGTQDMKSVGMQHLAAVRALKRSGAKFKRTIHISFVADEEMG
GRYGMRPFVPTEDFRALNVGFAMDEGLASPDEQLPLFYAERAVWRVYFNI
SGTAGHGSLLLPNTAGEKLNYIVGKMMEFRRSQVQRLQNNPELVIGDVTT
INLTKLGGGVQSNVVPPLLMVCFDCRLALDVDFEEFEANLHKWCADVGGG
IEITYEQKQPKVPPTAIDGSNPFWLAFKKATDEMHISIKPQIFTGGTDSR
YIRAVGIPALGFSPMNNTPVLLHDHDEFIQADIYLRGVQIFQKIISNIAN
V*

GH04054.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17518-PA 403 GF17518-PA 4..403 2..401 1792 79.2 Plus
Dana\GF17519-PA 403 GF17519-PA 1..402 1..400 1592 69.2 Plus
Dana\GF16975-PA 401 GF16975-PA 1..400 1..400 1396 61.3 Plus
Dana\GF16977-PA 400 GF16977-PA 1..400 1..401 1346 61.6 Plus
Dana\GF16976-PA 401 GF16976-PA 1..400 1..400 1327 58 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:52:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17281-PA 401 GG17281-PA 1..399 1..399 2011 92 Plus
Dere\GG17282-PA 405 GG17282-PA 1..403 1..401 1496 66.7 Plus
Dere\GG11184-PA 401 GG11184-PA 1..400 1..400 1421 63 Plus
Dere\GG11186-PA 400 GG11186-PA 1..400 1..401 1318 59.9 Plus
Dere\GG11187-PA 398 GG11187-PA 1..398 1..401 1299 59.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:52:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11206-PA 402 GH11206-PA 1..401 1..401 1663 74.1 Plus
Dgri\GH11748-PA 402 GH11748-PA 1..401 1..401 1638 72.8 Plus
Dgri\GH23739-PA 401 GH23739-PA 1..401 1..401 1380 61.3 Plus
Dgri\GH23872-PA 401 GH23872-PA 1..401 1..401 1372 59.1 Plus
Dgri\GH23814-PA 400 GH23814-PA 1..400 1..401 1370 61.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6465-PA 401 CG6465-PA 1..401 1..401 2128 100 Plus
CG6726-PC 401 CG6726-PC 1..400 1..400 1409 64 Plus
CG6726-PA 401 CG6726-PA 1..400 1..400 1409 64 Plus
CG6726-PB 401 CG6726-PB 1..400 1..400 1409 64 Plus
CG17109-PB 400 CG17109-PB 1..400 1..401 1300 60.3 Plus
CG17109-PA 400 CG17109-PA 1..400 1..401 1300 60.3 Plus
CG6733-PA 401 CG6733-PA 1..401 1..401 1282 58.4 Plus
CG6738-PA 401 CG6738-PA 1..401 1..401 1265 57.4 Plus
CG17110-PB 402 CG17110-PB 5..401 3..400 1261 57.8 Plus
CG17110-PC 402 CG17110-PC 5..401 3..400 1261 57.8 Plus
CG17110-PA 402 CG17110-PA 5..401 3..400 1261 57.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18128-PA 402 GI18128-PA 1..401 1..401 1662 74.6 Plus
Dmoj\GI23017-PA 401 GI23017-PA 1..401 1..401 1415 62.8 Plus
Dmoj\GI23020-PA 401 GI23020-PA 1..401 1..401 1344 59.6 Plus
Dmoj\GI23018-PA 399 GI23018-PA 1..398 1..400 1339 59.8 Plus
Dmoj\GI23019-PA 401 GI23019-PA 1..401 1..401 1281 55.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23825-PA 406 GL23825-PA 1..401 1..401 1856 83.5 Plus
Dper\GL23826-PA 401 GL23826-PA 1..401 1..401 1719 76.1 Plus
Dper\GL13662-PA 401 GL13662-PA 1..400 1..400 1417 62 Plus
Dper\GL13663-PA 401 GL13663-PA 1..401 1..401 1328 58.6 Plus
Dper\GL13664-PA 401 GL13664-PA 1..400 1..400 1298 57.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27068-PA 406 GA27068-PA 1..401 1..401 1848 83.3 Plus
Dpse\GA29129-PA 406 GA29129-PA 1..401 1..401 1840 83 Plus
Dpse\GA27069-PA 401 GA27069-PA 1..401 1..401 1718 76.1 Plus
Dpse\GA29130-PA 400 GA29130-PA 1..400 1..401 1707 76.1 Plus
Dpse\GA19815-PA 401 GA19815-PA 1..400 1..400 1416 61.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26165-PA 401 GM26165-PA 1..401 1..401 2117 97.5 Plus
Dsec\GM26166-PA 405 GM26166-PA 1..403 1..401 1495 66.7 Plus
Dsec\GM26483-PA 401 GM26483-PA 1..400 1..400 1439 63.7 Plus
Dsec\GM26487-PA 401 GM26487-PA 1..401 1..401 1324 58.6 Plus
Dsec\GM26486-PA 400 GM26486-PA 1..400 1..401 1321 59.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20716-PA 503 GD20716-PA 133..503 31..401 1965 97.8 Plus
Dsim\GD20717-PA 405 GD20717-PA 1..403 1..401 1497 66.7 Plus
Dsim\GD20996-PA 401 GD20996-PA 1..400 1..400 1432 63.2 Plus
Dsim\GD21000-PA 401 GD21000-PA 1..401 1..401 1327 59.4 Plus
Dsim\GD20999-PA 400 GD20999-PA 1..400 1..401 1321 60.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17753-PA 402 GJ17753-PA 1..401 1..401 1622 74.6 Plus
Dvir\GJ24611-PA 401 GJ24611-PA 1..401 1..401 1404 61.6 Plus
Dvir\GJ24614-PA 401 GJ24614-PA 1..401 1..401 1391 60.3 Plus
Dvir\GJ24612-PA 399 GJ24612-PA 1..399 1..401 1337 59.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22579-PA 401 GK22579-PA 1..401 1..401 1721 76.3 Plus
Dwil\GK22580-PA 403 GK22580-PA 1..403 1..401 1544 66.3 Plus
Dwil\GK14410-PA 401 GK14410-PA 1..400 1..400 1376 59 Plus
Dwil\GK14412-PA 400 GK14412-PA 1..399 1..400 1284 57 Plus
Dwil\GK14413-PA 401 GK14413-PA 1..401 1..401 1256 57.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24682-PA 401 GE24682-PA 1..400 1..400 2080 95.8 Plus
Dyak\GE24683-PA 405 GE24683-PA 1..403 1..401 1504 67.5 Plus
Dyak\GE10351-PA 401 GE10351-PA 1..400 1..400 1425 63 Plus
Dyak\GE10354-PA 401 GE10354-PA 1..401 1..401 1329 59.9 Plus
Dyak\GE10353-PA 400 GE10353-PA 1..400 1..401 1317 59.9 Plus