Clone GH04057 Report

Search the DGRC for GH04057

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:40
Well:57
Vector:pOT2
Associated Gene/TranscriptCG9400-RA
Protein status:GH04057.pep: gold
Preliminary Size:1335
Sequenced Size:1173

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9400 2001-01-01 Release 2 assignment
CG9400 2002-06-21 Blastp of sequenced clone
CG9400 2003-01-01 Sim4 clustering to Release 3
CG9400 2008-04-29 Release 5.5 accounting
CG9400 2008-08-15 Release 5.9 accounting
CG9400 2008-12-18 5.12 accounting

Clone Sequence Records

GH04057.complete Sequence

1173 bp (1173 high quality bases) assembled on 2002-06-21

GenBank Submission: AY128414

> GH04057.complete
ATCGTCGAGATGCCGAGATTGTTGAGCAAGTGCAGCGTGTTTGCCCTTTG
GGCGCCTGCAGTGCTCCTCTTTGTTTTGGCTTGCGAAAAGGGATTAGCCG
GAGCTCAGACCTTAATCGAAACTATAACCACCACTACTCCAGCGTCCTCT
GGCGGCTACTGTGCGGCTGCACTTTGTGAGCTGTACAATGGAACGCATTT
GGTGCATGTGCCGCATACCGCATGTGGCAACAATGGCAGCTTTTCACCCG
CCTGTGGACCGGAACCCAAGCTCCTGGAAATGAGCGAGAGGCGACGTCAG
CTCCTGTTGGACATGCACAATTTGGCCAGATCGAAGATCGCCAGCGGAAA
TCTGGATGGCTATAGAAGCGCCGCACATATGCCGCTTCTGCGTTGGGATA
CCGAACTGGAGCAAATGGCCGCCTTGCATGCCAAACGCTGCCAATTCGCG
CACGACAAGTGCCGGAATACACCGCGTTTCAAGTTTAGTGGTCAAAATAT
TGGTTACTTTTGGATTGGAAGAGAGTTCAAATCGCATTCGCGACGCATGA
AATCCTTCGTGATCAACTGGTTCCGCGAACATCAGGATGCCAATCAGAGC
TTCATCGATAGATATCATCCACATCCGCAAGGCAAGAAAATTGGTCACTT
CACATTACTTGTTTCGGATCGAGTTAATCGCGTCGGCTGTGCCGGTGTCC
GTTTCCTGGAGCCCAAATCCAATCGCTTCCAGTTCATGTTGACGTGCAAC
TATGACTATAACAACATTTTCAACGAACCCATCTACCAATCTGGTCCGGC
GGGATCTAAATGCCCCCAGCATCGAATCAGCGAAAAGTTCCCCAGCTTGT
GCGACTGGCGGGATGCTAACAATGATTTAGACAGCGAGGAAAGCGATGAA
GATGGTAACACTTTGGACAACAATATACCCCTGTAAAATAAATAGGTCCC
TAGCATATAAAACTAATACTCGTGGAGCCCCACCTGGAACCAGTTACAAA
ACAAACTTCTTTTTTTTTTGGTAATGTATAAGAAATCATTTTAAATGAGT
TATTGTAAAATCTTTGGAATGTATCATTTTATTACTAAGTGGTTGTTGTT
GATAGCTTACTAGAATTAAAATTTACATTAATTACGAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA

GH04057.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9400-RB 1298 CG9400-RB 160..1295 1..1136 5680 100 Plus
CG9400-RA 1213 CG9400-RA 75..1210 1..1136 5680 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 14179315..14179946 632..1 3160 100 Minus
chrX 22417052 chrX 14178657..14179161 1136..632 2525 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:30:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14288742..14289373 632..1 3160 100 Minus
X 23542271 X 14288084..14288588 1136..632 2525 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 14296840..14297471 632..1 3160 100 Minus
X 23527363 X 14296182..14296686 1136..632 2525 100 Minus
Blast to na_te.dros performed on 2019-03-16 02:01:10 has no hits.

GH04057.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:02:05 Download gff for GH04057.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 14178657..14179160 633..1136 100 <- Minus
chrX 14179315..14179946 1..632 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:12:50 Download gff for GH04057.complete
Subject Subject Range Query Range Percent Splice Strand
CG9400-RB 160..1095 1..936 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:19:40 Download gff for GH04057.complete
Subject Subject Range Query Range Percent Splice Strand
CG9400-RB 160..1095 1..936 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:13:52 Download gff for GH04057.complete
Subject Subject Range Query Range Percent Splice Strand
CG9400-RB 160..1095 1..936 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:10:42 Download gff for GH04057.complete
Subject Subject Range Query Range Percent Splice Strand
CG9400-RB 160..1095 1..936 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:55:16 Download gff for GH04057.complete
Subject Subject Range Query Range Percent Splice Strand
CG9400-RA 1..927 10..936 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:45:07 Download gff for GH04057.complete
Subject Subject Range Query Range Percent Splice Strand
CG9400-RB 160..1295 1..1136 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:19:40 Download gff for GH04057.complete
Subject Subject Range Query Range Percent Splice Strand
CG9400-RB 160..1295 1..1136 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:13:52 Download gff for GH04057.complete
Subject Subject Range Query Range Percent Splice Strand
CG9400-RA 1..1136 1..1136 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:10:42 Download gff for GH04057.complete
Subject Subject Range Query Range Percent Splice Strand
CG9400-RB 160..1295 1..1136 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:55:16 Download gff for GH04057.complete
Subject Subject Range Query Range Percent Splice Strand
CG9400-RA 21..1156 1..1136 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:02:05 Download gff for GH04057.complete
Subject Subject Range Query Range Percent Splice Strand
X 14288084..14288587 633..1136 100 <- Minus
X 14288742..14289373 1..632 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:02:05 Download gff for GH04057.complete
Subject Subject Range Query Range Percent Splice Strand
X 14288084..14288587 633..1136 100 <- Minus
X 14288742..14289373 1..632 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:02:05 Download gff for GH04057.complete
Subject Subject Range Query Range Percent Splice Strand
X 14288084..14288587 633..1136 100 <- Minus
X 14288742..14289373 1..632 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:13:52 Download gff for GH04057.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14182117..14182620 633..1136 100 <- Minus
arm_X 14182775..14183406 1..632 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:43:03 Download gff for GH04057.complete
Subject Subject Range Query Range Percent Splice Strand
X 14296182..14296685 633..1136 100 <- Minus
X 14296840..14297471 1..632 100   Minus

GH04057.hyp Sequence

Translation from 1 to 935

> GH04057.hyp
IVEMPRLLSKCSVFALWAPAVLLFVLACEKGLAGAQTLIETITTTTPASS
GGYCAAALCELYNGTHLVHVPHTACGNNGSFSPACGPEPKLLEMSERRRQ
LLLDMHNLARSKIASGNLDGYRSAAHMPLLRWDTELEQMAALHAKRCQFA
HDKCRNTPRFKFSGQNIGYFWIGREFKSHSRRMKSFVINWFREHQDANQS
FIDRYHPHPQGKKIGHFTLLVSDRVNRVGCAGVRFLEPKSNRFQFMLTCN
YDYNNIFNEPIYQSGPAGSKCPQHRISEKFPSLCDWRDANNDLDSEESDE
DGNTLDNNIPL*

GH04057.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9400-PA 308 CG9400-PA 1..308 4..311 1680 100 Plus
CG32679-PA 254 CG32679-PA 13..248 38..291 373 35.4 Plus
Ag5r2-PA 254 CG9540-PA 10..253 42..291 326 29.1 Plus
CG9822-PA 263 CG9822-PA 38..257 72..291 319 32.9 Plus
scpr-A-PA 264 CG5207-PA 18..264 48..305 318 30.5 Plus

GH04057.pep Sequence

Translation from 9 to 935

> GH04057.pep
MPRLLSKCSVFALWAPAVLLFVLACEKGLAGAQTLIETITTTTPASSGGY
CAAALCELYNGTHLVHVPHTACGNNGSFSPACGPEPKLLEMSERRRQLLL
DMHNLARSKIASGNLDGYRSAAHMPLLRWDTELEQMAALHAKRCQFAHDK
CRNTPRFKFSGQNIGYFWIGREFKSHSRRMKSFVINWFREHQDANQSFID
RYHPHPQGKKIGHFTLLVSDRVNRVGCAGVRFLEPKSNRFQFMLTCNYDY
NNIFNEPIYQSGPAGSKCPQHRISEKFPSLCDWRDANNDLDSEESDEDGN
TLDNNIPL*

GH04057.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22388-PA 311 GF22388-PA 1..311 1..308 1303 77.5 Plus
Dana\GF21595-PA 256 GF21595-PA 6..248 33..281 401 36.6 Plus
Dana\GF20496-PA 256 GF20496-PA 14..251 35..288 378 34.6 Plus
Dana\GF21134-PA 248 GF21134-PA 6..247 33..281 341 33.5 Plus
Dana\GF12100-PA 263 GF12100-PA 8..257 29..288 338 32.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19461-PA 308 GG19461-PA 1..308 1..308 1529 93.2 Plus
Dere\GG18928-PA 253 GG18928-PA 10..241 35..282 366 34.3 Plus
Dere\GG19449-PA 256 GG19449-PA 35..243 72..281 340 34.4 Plus
Dere\GG19450-PA 288 GG19450-PA 55..286 50..287 333 30.6 Plus
Dere\GG20782-PA 263 GG20782-PA 5..257 12..288 331 31.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24944-PA 305 GH24944-PA 1..305 1..308 1125 66.9 Plus
Dgri\GH17451-PA 253 GH17451-PA 4..245 20..281 382 35.9 Plus
Dgri\GH12878-PA 260 GH12878-PA 42..247 69..281 376 36.2 Plus
Dgri\GH12213-PA 256 GH12213-PA 24..253 50..286 351 32.4 Plus
Dgri\GH12214-PA 256 GH12214-PA 15..243 48..281 349 32.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9400-PA 308 CG9400-PA 1..308 1..308 1680 100 Plus
CG32679-PA 254 CG32679-PA 13..248 35..288 373 35.4 Plus
Ag5r2-PA 254 CG9540-PA 10..253 39..288 326 29.1 Plus
CG9822-PA 263 CG9822-PA 38..257 69..288 319 32.9 Plus
scpr-A-PA 264 CG5207-PA 18..264 45..302 318 30.5 Plus
CG42780-PA 253 CG42780-PA 22..250 50..281 317 33.1 Plus
scpr-B-PA 262 CG17210-PA 31..262 69..302 316 31.5 Plus
scpr-C-PB 262 CG5106-PB 31..262 69..302 316 31.5 Plus
scpr-C-PA 262 CG5106-PA 31..262 69..302 316 31.5 Plus
CG42780-PB 254 CG42780-PB 22..251 50..281 312 33.3 Plus
Ag5r-PC 256 CG9538-PC 35..250 72..288 311 32.9 Plus
Ag5r-PB 256 CG9538-PB 35..250 72..288 311 32.9 Plus
Ag5r-PA 256 CG9538-PA 35..250 72..288 311 32.9 Plus
CG3640-PA 296 CG3640-PA 11..244 35..281 310 30.8 Plus
CG17974-PA 259 CG17974-PA 20..253 45..285 304 32.1 Plus
CG6628-PA 277 CG6628-PA 31..270 50..297 294 29.8 Plus
CG17575-PA 291 CG17575-PA 37..276 69..281 267 29.8 Plus
CG30486-PA 263 CG30486-PA 17..234 45..268 249 30 Plus
CG17575-PB 298 CG17575-PB 37..283 69..281 249 28.9 Plus
CG34002-PB 350 CG34002-PB 29..252 56..282 248 31.3 Plus
CG42564-PA 500 CG10284-PA 55..277 50..281 242 25 Plus
CG43776-PA 270 CG43776-PA 64..259 96..281 222 33.2 Plus
CG43776-PB 270 CG43776-PB 64..259 96..281 222 33.2 Plus
CG43775-PA 272 CG43775-PA 66..263 96..282 222 31.2 Plus
CG43777-PA 273 CG43777-PA 5..257 35..281 196 27.9 Plus
CG43777-PC 273 CG43777-PC 5..257 35..281 196 27.9 Plus
CG43777-PB 273 CG43777-PB 5..257 35..281 196 27.9 Plus
CG8483-PA 392 CG8483-PA 22..213 81..281 192 27.7 Plus
CG10651-PB 316 CG10651-PB 8..247 35..281 185 25.8 Plus
CG10651-PA 316 CG10651-PA 8..247 35..281 185 25.8 Plus
CG31296-PB 280 CG31296-PB 26..245 56..281 184 30.7 Plus
CG31296-PA 280 CG31296-PA 26..245 56..281 184 30.7 Plus
antr-PB 272 CG30488-PB 36..263 69..307 167 23.7 Plus
antr-PA 265 CG30488-PA 42..256 82..307 159 24.1 Plus
CG8072-PA 247 CG8072-PA 35..240 69..281 154 27.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15744-PA 256 GI15744-PA 24..236 50..268 365 34.7 Plus
Dmoj\GI22513-PA 240 GI22513-PA 26..239 76..288 346 33.6 Plus
Dmoj\GI20471-PA 263 GI20471-PA 39..257 67..285 323 32.1 Plus
Dmoj\Tes104-PA 260 GI22692-PA 2..242 33..281 318 30.8 Plus
Dmoj\GI15747-PA 256 GI15747-PA 40..240 77..272 316 35 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22646-PA 302 GL22646-PA 1..302 1..308 1233 75.3 Plus
Dper\GL20410-PA 254 GL20410-PA 21..252 50..287 322 30.2 Plus
Dper\GL20409-PA 257 GL20409-PA 35..244 72..281 318 33.3 Plus
Dper\GL11847-PA 263 GL11847-PA 36..255 69..288 312 33.8 Plus
Dper\GL14627-PA 248 GL14627-PA 20..233 47..268 311 35.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21762-PA 301 GA21762-PA 43..301 50..308 1205 82.2 Plus
Dpse\GA29233-PA 258 GA29233-PA 4..238 16..268 389 34.2 Plus
Dpse\GA23354-PA 263 GA23354-PA 19..250 35..281 353 33.9 Plus
Dpse\GA28431-PA 253 GA28431-PA 20..245 47..281 335 36.4 Plus
Dpse\GA21866-PA 254 GA21866-PA 21..252 50..287 322 30.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17559-PA 308 GM17559-PA 1..308 1..308 1564 95.5 Plus
Dsec\GM11319-PA 237 GM11319-PA 20..224 69..281 368 37.6 Plus
Dsec\GM12040-PA 254 GM12040-PA 10..252 39..287 330 30 Plus
Dsec\GM15726-PA 263 GM15726-PA 38..257 69..288 328 34.2 Plus
Dsec\GM12039-PA 256 GM12039-PA 35..243 72..281 326 33.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15853-PA 308 GD15853-PA 1..308 1..308 1536 95.8 Plus
Dsim\GD16039-PA 254 GD16039-PA 11..248 35..288 376 35.4 Plus
Dsim\GD25203-PA 263 GD25203-PA 38..257 69..288 327 33.8 Plus
Dsim\GD20669-PA 262 GD20669-PA 31..262 69..302 314 31.1 Plus
Dsim\GD18744-PA 277 GD18744-PA 33..246 69..281 310 32.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10116-PA 253 GJ10116-PA 5..249 35..285 430 36.6 Plus
Dvir\GJ18605-PA 253 GJ18605-PA 21..233 50..268 374 35.4 Plus
Dvir\GJ18491-PA 324 GJ18491-PA 87..311 45..281 336 33.3 Plus
Dvir\GJ23256-PA 260 GJ23256-PA 14..242 45..281 327 32.4 Plus
Dvir\GJ23982-PA 265 GJ23982-PA 34..247 69..281 326 33.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10315-PA 296 GK10315-PA 1..296 1..308 1127 68.6 Plus
Dwil\GK14741-PA 240 GK14741-PA 7..232 50..281 409 35.9 Plus
Dwil\GK14730-PA 256 GK14730-PA 23..249 50..282 406 38.6 Plus
Dwil\GK18435-PA 257 GK18435-PA 26..237 50..268 395 35.9 Plus
Dwil\GK25699-PA 253 GK25699-PA 5..247 34..288 374 34.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16115-PA 308 GE16115-PA 1..308 1..308 1526 92.5 Plus
Dyak\GE15398-PA 253 GE15398-PA 14..240 39..281 385 36.2 Plus
Dyak\GE16103-PA 283 GE16103-PA 26..281 26..287 329 29.3 Plus
Dyak\GE13719-PA 263 GE13719-PA 38..257 69..288 327 33.8 Plus
Dyak\GE17527-PA 247 GE17527-PA 35..246 69..281 324 34.9 Plus