BDGP Sequence Production Resources |
Search the DGRC for GH04071
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 40 |
Well: | 71 |
Vector: | pOT2 |
Associated Gene/Transcript | mtTFB2-RA |
Protein status: | GH04071.pep: gold |
Preliminary Size: | 1640 |
Sequenced Size: | 1506 |
Gene | Date | Evidence |
---|---|---|
CG3910 | 2001-01-01 | Release 2 assignment |
CG3910 | 2001-10-10 | Blastp of sequenced clone |
CG3910 | 2003-01-01 | Sim4 clustering to Release 3 |
mtTFB2 | 2008-04-29 | Release 5.5 accounting |
mtTFB2 | 2008-08-15 | Release 5.9 accounting |
mtTFB2 | 2008-12-18 | 5.12 accounting |
1506 bp (1506 high quality bases) assembled on 2001-10-10
GenBank Submission: AY060616
> GH04071.complete CAATACACAGCTGATGCTTGTAAACAAACGAAAAGTTCACTTAATTTTCA ATTTGTTAAAAATCTTAAGAAATGCTGCCCCTGCGATGCAGTTGGTCCTT TGCCCGGGCCAACTATAGCACCAAAAAGGAACTGGTGACTCGCTACAGCG GCGATTTCCCCGAGAAACTGCTCAACCGGAAGCAAAAGGTTCCCACTCAC ATGTACATTGCAAATTCGGAGGCTGCTGCAAGGATTAACCAGTACCTGGA GCCCCATTTCCAGAGCTCCGGTTGCGATACCGTGATGGAACTCAATTCCG GTGCTGGGTACTTTACCCGGCATCTGTTGGACAGGGAATCCCAGTTTCGA CGCATAATTCTGCTTGAGAGCATGGATCACTTTATGCCCAAAATCCAGGA GCTACACACGCTATATCCGGAACGTGTGAAGGTGCGCCAAGGAGACTTTG TGAACCTGTGGAAGTTGGTGTACATGGACAAAATGGACGGTGGTTCCAGG GTGGCGGATCTCCTGAGTGATGTGCCCCAGAAAGCGTTTACAGATGATAT CAACATGCTAGTCTTCGGCGCCGTGGGCTCCTATCCATTCTTCAAGCACT TGATCAACTCCCTCATTTTTCAGACCAGCCTTTTCAACCTTGGACGCTGT GAGATGATCCTCGCCATGCCGCCACCCATATACATACATCTCACCTGCAA CAACGAGATTGGCTACCTCATTTACCGATCGACCAGCGTACTGTTTCAAA TTCTGTTTGAGCACAAATTCATAGCCAAGGTGCCGCGCGAGGATTTTCTA CCTCAGCAGATGGCCTATAGCCCCACCAAGAGTAGCAAGTTGGGTAAGGT GCAGTCCATCAATCCCGAGTACTTGTACTTGGTGAAATTCACTCCGCGCC GCAATCTTCATGAGCTGTGCCAGTCGCAGGATCTACCCGCTCTCTGGTTC TTCATTAAGCAGAACTATGTAAGCCGACGAAACAGAATAATACCCAATTT AGAAAAGTGGGTTCCCGGCTGTGGACCTCGGCTTATCATTAATCCGAAGT CCTCCGAGTCCGTAACACCCATCTATCCAGATGAATTGCCCAAGAAACTA CCACAGTACTCGTGCCAGAGTACTACAATGAGCACCAGAAACTACTATCC CGGCATCAACATCTACACACAGTTCGGAGATCTCCTGCCCAGTCAGATTC TGACGCTATTTAGTCAGTTTCGTCAGTGGCCGGAGTACGGCGAGAGCTCT TTCCTCGCCTCGCTGGAAAATGCGCTGCTCAAGCTGGAGACTGCCAATGA CGAACCAAACCTAGAGGATGGCGTCACGTTGCCAGAAGAGGATGATGCCG AAGCAGATGAAATTATCGAAGAAGAAAGCCCTGTACCCGCCACCACTCCC GTCAAGAGGCGCAGGAAAGCCAGTTCTTAGTTGTACATAATAGCGTTTTG CTTGTGCAAGAAAAATAAAGAATTGCCTTCATTTTGAGAAAAAAAAAAAA AAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mtTFB2-RA | 1543 | mtTFB2-RA | 39..1529 | 1..1491 | 7455 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 5871367..5871912 | 1..546 | 2730 | 100 | Plus |
chr3R | 27901430 | chr3R | 5872545..5873029 | 1004..1488 | 2425 | 100 | Plus |
chr3R | 27901430 | chr3R | 5872167..5872483 | 687..1003 | 1585 | 100 | Plus |
chr3R | 27901430 | chr3R | 5871965..5872105 | 546..686 | 705 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 10045598..10046143 | 1..546 | 2730 | 100 | Plus |
3R | 32079331 | 3R | 10046776..10047263 | 1004..1491 | 2440 | 100 | Plus |
3R | 32079331 | 3R | 10046398..10046714 | 687..1003 | 1585 | 100 | Plus |
3R | 32079331 | 3R | 10046196..10046336 | 546..686 | 705 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 9786429..9786974 | 1..546 | 2730 | 100 | Plus |
3R | 31820162 | 3R | 9787607..9788094 | 1004..1491 | 2440 | 100 | Plus |
3R | 31820162 | 3R | 9787229..9787545 | 687..1003 | 1585 | 100 | Plus |
3R | 31820162 | 3R | 9787027..9787167 | 546..686 | 705 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 5871367..5871912 | 1..546 | 100 | -> | Plus |
chr3R | 5871966..5872105 | 547..686 | 100 | -> | Plus |
chr3R | 5872167..5872483 | 687..1003 | 100 | -> | Plus |
chr3R | 5872545..5873029 | 1004..1488 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mtTFB2-RA | 1..1359 | 72..1430 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mtTFB2-RA | 1..1359 | 72..1430 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mtTFB2-RA | 1..1359 | 72..1430 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mtTFB2-RA | 1..1359 | 72..1430 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mtTFB2-RA | 1..1359 | 72..1430 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mtTFB2-RA | 23..1510 | 1..1488 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mtTFB2-RA | 23..1510 | 1..1488 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mtTFB2-RA | 25..1512 | 1..1488 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mtTFB2-RA | 23..1510 | 1..1488 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mtTFB2-RA | 25..1512 | 1..1488 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10045598..10046143 | 1..546 | 100 | -> | Plus |
3R | 10046197..10046336 | 547..686 | 100 | -> | Plus |
3R | 10046398..10046714 | 687..1003 | 100 | -> | Plus |
3R | 10046776..10047260 | 1004..1488 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10045598..10046143 | 1..546 | 100 | -> | Plus |
3R | 10046197..10046336 | 547..686 | 100 | -> | Plus |
3R | 10046398..10046714 | 687..1003 | 100 | -> | Plus |
3R | 10046776..10047260 | 1004..1488 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10045598..10046143 | 1..546 | 100 | -> | Plus |
3R | 10046197..10046336 | 547..686 | 100 | -> | Plus |
3R | 10046398..10046714 | 687..1003 | 100 | -> | Plus |
3R | 10046776..10047260 | 1004..1488 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 5871320..5871865 | 1..546 | 100 | -> | Plus |
arm_3R | 5871919..5872058 | 547..686 | 100 | -> | Plus |
arm_3R | 5872120..5872436 | 687..1003 | 100 | -> | Plus |
arm_3R | 5872498..5872982 | 1004..1488 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9786429..9786974 | 1..546 | 100 | -> | Plus |
3R | 9787028..9787167 | 547..686 | 100 | -> | Plus |
3R | 9787229..9787545 | 687..1003 | 100 | -> | Plus |
3R | 9787607..9788091 | 1004..1488 | 100 | Plus |
Translation from 71 to 1429
> GH04071.pep MLPLRCSWSFARANYSTKKELVTRYSGDFPEKLLNRKQKVPTHMYIANSE AAARINQYLEPHFQSSGCDTVMELNSGAGYFTRHLLDRESQFRRIILLES MDHFMPKIQELHTLYPERVKVRQGDFVNLWKLVYMDKMDGGSRVADLLSD VPQKAFTDDINMLVFGAVGSYPFFKHLINSLIFQTSLFNLGRCEMILAMP PPIYIHLTCNNEIGYLIYRSTSVLFQILFEHKFIAKVPREDFLPQQMAYS PTKSSKLGKVQSINPEYLYLVKFTPRRNLHELCQSQDLPALWFFIKQNYV SRRNRIIPNLEKWVPGCGPRLIINPKSSESVTPIYPDELPKKLPQYSCQS TTMSTRNYYPGINIYTQFGDLLPSQILTLFSQFRQWPEYGESSFLASLEN ALLKLETANDEPNLEDGVTLPEEDDAEADEIIEEESPVPATTPVKRRRKA SS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17852-PA | 454 | GF17852-PA | 1..454 | 1..452 | 2004 | 83.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17302-PA | 454 | GG17302-PA | 1..454 | 1..452 | 2274 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22567-PA | 473 | GH22567-PA | 2..469 | 1..450 | 1746 | 67.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mtTFB2-PA | 452 | CG3910-PA | 1..452 | 1..452 | 2381 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23134-PA | 471 | GI23134-PA | 19..469 | 4..452 | 1760 | 71.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL27200-PA | 452 | GL27200-PA | 1..446 | 1..442 | 1899 | 77.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17767-PA | 452 | GA17767-PA | 1..446 | 1..442 | 1900 | 77.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23852-PA | 454 | GM23852-PA | 1..454 | 1..452 | 2239 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18660-PA | 457 | GD18660-PA | 1..452 | 1..450 | 2222 | 95.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10435-PA | 471 | GJ10435-PA | 1..469 | 1..452 | 1756 | 69.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22500-PA | 439 | GK22500-PA | 22..430 | 25..433 | 1727 | 76.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE26003-PA | 454 | GE26003-PA | 1..454 | 1..452 | 2304 | 93.6 | Plus |
Translation from 71 to 1429
> GH04071.hyp MLPLRCSWSFARANYSTKKELVTRYSGDFPEKLLNRKQKVPTHMYIANSE AAARINQYLEPHFQSSGCDTVMELNSGAGYFTRHLLDRESQFRRIILLES MDHFMPKIQELHTLYPERVKVRQGDFVNLWKLVYMDKMDGGSRVADLLSD VPQKAFTDDINMLVFGAVGSYPFFKHLINSLIFQTSLFNLGRCEMILAMP PPIYIHLTCNNEIGYLIYRSTSVLFQILFEHKFIAKVPREDFLPQQMAYS PTKSSKLGKVQSINPEYLYLVKFTPRRNLHELCQSQDLPALWFFIKQNYV SRRNRIIPNLEKWVPGCGPRLIINPKSSESVTPIYPDELPKKLPQYSCQS TTMSTRNYYPGINIYTQFGDLLPSQILTLFSQFRQWPEYGESSFLASLEN ALLKLETANDEPNLEDGVTLPEEDDAEADEIIEEESPVPATTPVKRRRKA SS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mtTFB2-PA | 452 | CG3910-PA | 1..452 | 1..452 | 2381 | 100 | Plus |