Clone GH04081 Report

Search the DGRC for GH04081

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:40
Well:81
Vector:pOT2
Associated Gene/TranscriptwupA-RH
Protein status:GH04081.pep: gold
Sequenced Size:1200

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
wupA-RG 2010-11-11 Gleaning Pick By Joe Carlson

Clone Sequence Records

GH04081.complete Sequence

1200 bp assembled on 2010-11-23

GenBank Submission: BT125790.1

> GH04081.complete
CAGTCTTTTTGTGTCGTTCAGTATCATCCGATTCGTGTGATCGACAGCAT
AGCCGAATTTTTTTTCTTTTTTTTCTAATTCCTTGAAGTAACCAAAAACA
CAAATCAAAATGGCTGATGATGAGAAAAAGGCAGCAGCTCCGGCCGCAGC
TCCAGCGGCGGCGGCCAAACCGGCGGCTCCGGCAGCAGCCCCGGCGGCCA
ATGGCAAGGCTGCTCCGGCGGCCAATGGAAAGGCTGCTCCGGCAGCTGCC
GCCGCTCCCGCCGGTCCGCCCAAGGATCCCAACGACCCCAAAGTGAAGGC
CGAGGAGGCTAAGAAGGCTAAACAGGCTGAGATCGAGCGCAAGCGTGCTG
AGGTGCGCAAGCGCATGGAGGAAGCCTCCAAGGCCAAGAAGGCCAAGAAG
GGTTTCATGACCCCAGAGAGGAAGAAGAAACTCAGGTTGCTGCTGCGTAA
GAAAGCCGCTGAGGAGCTGAAGAAAGAACAGGAACGCAAAGCGGCTGAAC
GTAGACGCATCATCGAAGAACGTTGCGGCAGTCCCAGGAATCTCAGCGAT
GCCAGCGAAGGCGAATTGCAAGAGATTTGCGAAGAGTATTACGAGCGTAT
GTATATTTGTGAAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAA
AAGACTGGGAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGC
AAGTTCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATT
CGCCAAGCTGCAGAAGAAGGCCGCTGAGTTCAACTTCCGCAACCAGCTCA
AGGTGGTGAAGAAGAAGGAGTTCACGCTGGAGGAGGAGGAGAAGGAGAAA
AAGATAAAAGATGCCGCTGTGCTAAATAAGGCCAAAAAGTAAGAAACCCG
ACTGGTCCAAGGGCAAGCCCGGAGATGCCAAGGTGAAGGAGGAGGTTGAG
GCCGAAGCTTAAGTGTCCACACGTCCACTAGTGTCCACTGACCCGTGACT
CCCGCCCTAAACAATAATTGAAATTATTTACAACAATTATCTGAAGCAAT
ATAATTTATATGAATCTATTAATATATATATATATCCGCAAATATATATG
CATGTATATATCTCGCCATATATATGTGTCCACAATGGATTTGATCAGAA
ATGAAGTCAATAAACAACAACAGCAACAACTAAAAAAAAAAAAAAAAAAA

GH04081.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:12:30
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17995055..17995345 1181..891 1455 100 Minus
chrX 22417052 chrX 18003059..18003244 308..123 930 100 Minus
chrX 22417052 chrX 17995994..17996135 847..706 710 100 Minus
chrX 22417052 chrX 18002767..18002897 436..306 655 100 Minus
chrX 22417052 chrX 18002577..18002702 561..436 630 100 Minus
chrX 22417052 chrX 17998792..17998894 661..559 515 100 Minus
chrX 22417052 chrX 18006037..18006124 88..1 440 100 Minus
chrX 22417052 chrX 17996201..17996246 705..660 230 100 Minus
chrX 22417052 chrX 17995819..17995863 890..846 225 100 Minus
chrX 22417052 chrX 18003931..18003968 124..87 190 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18105739..18106032 1184..891 1470 100 Minus
X 23542271 X 18113739..18113924 308..123 930 100 Minus
X 23542271 X 18106681..18106822 847..706 710 100 Minus
X 23542271 X 18113447..18113577 436..306 655 100 Minus
X 23542271 X 18113257..18113382 561..436 630 100 Minus
X 23542271 X 18109470..18109572 661..559 515 100 Minus
X 23542271 X 18116707..18116794 88..1 440 100 Minus
X 23542271 X 18106888..18106933 705..660 230 100 Minus
X 23542271 X 18106506..18106550 890..846 225 100 Minus
X 23542271 X 18114611..18114648 124..87 190 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18113837..18114130 1184..891 1470 100 Minus
X 23527363 X 18121837..18122022 308..123 930 100 Minus
X 23527363 X 18114779..18114920 847..706 710 100 Minus
X 23527363 X 18121545..18121675 436..306 655 100 Minus
X 23527363 X 18121355..18121480 561..436 630 100 Minus
X 23527363 X 18117568..18117670 661..559 515 100 Minus
X 23527363 X 18124805..18124892 88..1 440 100 Minus
X 23527363 X 18114986..18115031 705..660 230 100 Minus
X 23527363 X 18114604..18114648 890..846 225 100 Minus
X 23527363 X 18122709..18122746 124..87 190 100 Minus
Blast to na_te.dros performed on 2019-03-17 01:12:29 has no hits.

GH04081.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:13:21 Download gff for GH04081.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17996201..17996244 662..705 100 <- Minus
chrX 17995819..17995861 848..890 100 <- Minus
chrX 17995994..17996135 706..847 100 <- Minus
chrX 17998792..17998892 561..661 100 <- Minus
chrX 18002578..18002701 437..560 100 <- Minus
chrX 18002767..18002895 308..436 100 <- Minus
chrX 18003060..18003168 199..307 100 == Minus
chrX 18003931..18003966 89..124 100 <- Minus
chrX 18006037..18006124 1..88 100   Minus
chrX 17995188..17995345 891..1048 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-12-01 12:57:18 Download gff for GH04081.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RG 1..743 110..852 99 == Plus
wupA-RG 744..810 896..962 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:44:21 Download gff for GH04081.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RG 1..743 110..852 99 == Plus
wupA-RG 744..810 896..962 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:32:16 Download gff for GH04081.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RH 1..783 110..892 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:51:49 Download gff for GH04081.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RH 1..783 110..892 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-12-01 12:57:17 Download gff for GH04081.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RG 29..880 1..852 99 == Plus
wupA-RG 881..1166 896..1181 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:44:21 Download gff for GH04081.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RG 29..880 1..852 99 == Plus
wupA-RG 881..1166 896..1181 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:32:16 Download gff for GH04081.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RH 32..1212 1..1181 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:51:49 Download gff for GH04081.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RH 32..1212 1..1181 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:13:21 Download gff for GH04081.complete
Subject Subject Range Query Range Percent Splice Strand
X 18105742..18106032 891..1181 100 <- Minus
X 18106506..18106548 848..890 100 <- Minus
X 18106681..18106822 706..847 100 <- Minus
X 18106888..18106931 662..705 100 <- Minus
X 18109470..18109570 561..661 100 <- Minus
X 18113258..18113381 437..560 100 <- Minus
X 18113447..18113575 308..436 100 <- Minus
X 18113740..18113922 125..307 100 <- Minus
X 18114611..18114646 89..124 100 <- Minus
X 18116707..18116794 1..88 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:13:21 Download gff for GH04081.complete
Subject Subject Range Query Range Percent Splice Strand
X 18105742..18106032 891..1181 100 <- Minus
X 18106506..18106548 848..890 100 <- Minus
X 18106681..18106822 706..847 100 <- Minus
X 18106888..18106931 662..705 100 <- Minus
X 18109470..18109570 561..661 100 <- Minus
X 18113258..18113381 437..560 100 <- Minus
X 18113447..18113575 308..436 100 <- Minus
X 18113740..18113922 125..307 100 <- Minus
X 18114611..18114646 89..124 100 <- Minus
X 18116707..18116794 1..88 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:13:21 Download gff for GH04081.complete
Subject Subject Range Query Range Percent Splice Strand
X 18105742..18106032 891..1181 100 <- Minus
X 18106506..18106548 848..890 100 <- Minus
X 18106681..18106822 706..847 100 <- Minus
X 18106888..18106931 662..705 100 <- Minus
X 18109470..18109570 561..661 100 <- Minus
X 18113258..18113381 437..560 100 <- Minus
X 18113447..18113575 308..436 100 <- Minus
X 18113740..18113922 125..307 100 <- Minus
X 18114611..18114646 89..124 100 <- Minus
X 18116707..18116794 1..88 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:32:16 Download gff for GH04081.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17999775..18000065 891..1181 100 <- Minus
arm_X 18000539..18000581 848..890 100 <- Minus
arm_X 18000714..18000855 706..847 100 <- Minus
arm_X 18000921..18000964 662..705 100 <- Minus
arm_X 18003503..18003603 561..661 100 <- Minus
arm_X 18007291..18007414 437..560 100 <- Minus
arm_X 18007480..18007608 308..436 100 <- Minus
arm_X 18007773..18007955 125..307 100 <- Minus
arm_X 18008644..18008679 89..124 100 <- Minus
arm_X 18010740..18010827 1..88 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:51:33 Download gff for GH04081.complete
Subject Subject Range Query Range Percent Splice Strand
X 18124805..18124892 1..88 100   Minus
X 18113840..18114130 891..1181 100 <- Minus
X 18114604..18114646 848..890 100 <- Minus
X 18114779..18114920 706..847 100 <- Minus
X 18114986..18115029 662..705 100 <- Minus
X 18117568..18117668 561..661 100 <- Minus
X 18121356..18121479 437..560 100 <- Minus
X 18121545..18121673 308..436 100 <- Minus
X 18121838..18122020 125..307 100 <- Minus
X 18122709..18122744 89..124 100 <- Minus

GH04081.pep Sequence

Translation from 109 to 891

> GH04081.pep
MADDEKKAAAPAAAPAAAAKPAAPAAAPAANGKAAPAANGKAAPAAAAAP
AGPPKDPNDPKVKAEEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFM
TPERKKKLRLLLRKKAAEELKKEQERKAAERRRIIEERCGSPRNLSDASE
GELQEICEEYYERMYICEGQKWDLEYEVRKKDWEINDLNAQVNDLRGKFV
KPALKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEEKEKKIK
DAAVLNKAKK*

GH04081.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 10:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19521-PA 272 GF19521-PA 58..236 55..233 686 88.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 10:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18142-PA 269 GG18142-PA 56..233 56..233 685 88.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 10:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11970-PA 282 GH11970-PA 66..246 53..233 823 100 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
wupA-PH 260 CG7178-PH 1..260 1..260 1312 100 Plus
wupA-PG 269 CG7178-PG 1..248 1..248 1256 100 Plus
wupA-PF 208 CG7178-PF 4..187 65..248 931 99.5 Plus
wupA-PC 208 CG7178-PC 4..187 65..248 931 99.5 Plus
wupA-PI 199 CG7178-PI 4..199 65..260 876 90.3 Plus
wupA-PJ 199 CG7178-PJ 4..199 65..260 865 89.3 Plus
wupA-PE 208 CG7178-PE 4..187 65..248 820 89.7 Plus
wupA-PD 208 CG7178-PD 4..187 65..248 820 89.7 Plus
wupA-PB 208 CG7178-PB 4..187 65..248 818 87.5 Plus
wupA-PA 208 CG7178-PA 4..187 65..248 809 88.6 Plus
wupA-PM 184 CG7178-PM 1..163 86..248 713 87.7 Plus
wupA-PL 184 CG7178-PL 1..163 86..248 713 87.7 Plus
wupA-PK 184 CG7178-PK 1..163 86..248 713 87.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 10:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14711-PA 277 GI14711-PA 64..241 56..233 806 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 10:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14173-PA 267 GL14173-PA 54..231 56..233 693 89.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 10:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\TpnI-PA 267 GA22383-PA 54..231 56..233 693 89.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 10:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22835-PA 224 GM22835-PA 56..188 56..233 464 62.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 10:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24482-PA 98 GD24482-PA 13..98 67..152 401 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 10:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\wupA-PA 274 GJ16776-PA 61..238 56..233 806 100 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 10:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24919-PA 272 GK24919-PA 59..236 56..233 806 100 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 10:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\wupA-PA 270 GE15552-PA 57..234 56..233 691 89.9 Plus

GH04081.hyp Sequence

Translation from 109 to 891

> GH04081.hyp
MADDEKKAAAPAAAPAAAAKPAAPAAAPAANGKAAPAANGKAAPAAAAAP
AGPPKDPNDPKVKAEEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFM
TPERKKKLRLLLRKKAAEELKKEQERKAAERRRIIEERCGSPRNLSDASE
GELQEICEEYYERMYICEGQKWDLEYEVRKKDWEINDLNAQVNDLRGKFV
KPALKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEEKEKKIK
DAAVLNKAKK*

GH04081.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
wupA-PH 260 CG7178-PH 1..260 1..260 1312 100 Plus
wupA-PG 269 CG7178-PG 1..248 1..248 1256 100 Plus
wupA-PF 208 CG7178-PF 4..187 65..248 931 99.5 Plus
wupA-PC 208 CG7178-PC 4..187 65..248 931 99.5 Plus
wupA-PI 199 CG7178-PI 4..199 65..260 876 90.3 Plus